Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0023183

Physical Location & Seq

Genomic Coordinates Forward (+)

23109651 .. 23110073

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACAGACGTGGCTCATATCCAATCCGTCCTCACCGCAATCGGCGACCAACCCAATCACGATTCCGTTGACTCAGCTAAGGCCAAGCTCGCCGGAGTCGTTGACAGCCGTGCTGACGTGACGTACAAGAAGCCACTCGATCAAGGATGCCGAGGAGAGGCTCGTCGGGATTTATCTGTTGGTGAAGGCCGGAGTGGTGGAAGAGGAGGAGGTGGATGGCGTCAGCGACCAAGTTTCATTCGGATTCTACAGCAGCCGTTATCCGGGGCTGGGCTGGACCGGGTCAACCTCTCGGATCAAGGCTTACGTTTCTTGTCCGAGGAATTTCGCCGGGTCAGTGGATTGCTTCAGCTTGATCTTTTCAACATTGAGCTGCAAGTTCGAGTTATTGAAGATTTTGATTTTAAAACAAGTCATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

6.83

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023183)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00050520
rosa_samantha	Rh5AG206100 Rh5CG226600 Rh5DG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	157, 263, 270
AgsI	TTSAA	2 cut(s)	364, 392
AjiI	CACGTC	2 cut(s)	10, 118
AluBI	AGCT	4 cut(s)	77, 88, 352, 373
AluI	AGCT	4 cut(s)	77, 88, 352, 373
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	81, 187
ApeKI	GCWGC	2 cut(s)	253, 373
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	3 cut(s)	265, 281, 332
AsuHPI	GGTGA	2 cut(s)	25, 194
AvaII	GGWCC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	265, 360
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	2 cut(s)	93, 241
BcnI	CCSGG	3 cut(s)	265, 281, 332
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	2 cut(s)	254, 374
BlsI	GCNGC	2 cut(s)	255, 375
Bme1390I	CCNGG	3 cut(s)	265, 281, 332
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	2 cut(s)	10, 118
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	265, 281, 332
BmsI	GCATC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	3 cut(s)	265, 281, 332
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	151, 264, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 263, 270
BseDI	CCNNGG	3 cut(s)	151, 264, 318
BseGI	GGATG	2 cut(s)	152, 221
BseLI	CCNNNNNNNGG	3 cut(s)	157, 263, 270
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	3 cut(s)	168, 219, 222
BseXI	GCAGC	2 cut(s)	265, 360
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	83, 189
BsiSI	CCGG	5 cut(s)	93, 190, 264, 280, 331
BslI	CCNNNNNNNGG	3 cut(s)	157, 263, 270
BsnI	GGCC	2 cut(s)	83, 189
Bsp143I	GATC	3 cut(s)	139, 295, 355
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	83, 189
BspCNI	CTCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	151, 264, 318
BssMI	GATC	3 cut(s)	139, 295, 355
BssNI	GRCGYC	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	73, 78
BstF5I	GGATG	2 cut(s)	152, 221
BstKTI	GATC	3 cut(s)	142, 298, 358
BstMBI	GATC	3 cut(s)	139, 295, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	263, 279, 330
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	265, 360
BsuRI	GGCC	2 cut(s)	83, 189
BtrI	CACGTC	2 cut(s)	10, 118
BtsCI	GGATG	2 cut(s)	152, 221
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	124
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	73, 78
DpnI	GATC	3 cut(s)	141, 297, 357
DpnII	GATC	3 cut(s)	139, 295, 355
DraI	TTTAAA	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	332
FaiI	YATR	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	254, 374
FokI	GGATG	2 cut(s)	159, 228
Fsp4HI	GCNGC	2 cut(s)	254, 374
GluI	GCNGC	2 cut(s)	254, 374
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	83, 189
HapII	CCGG	5 cut(s)	93, 190, 264, 280, 331
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	220
HincII	GTYRAC	3 cut(s)	70, 103, 286
HindII	GTYRAC	3 cut(s)	70, 103, 286
HinfI	GANTC	4 cut(s)	62, 71, 96, 244
HpaII	CCGG	5 cut(s)	93, 190, 264, 280, 331
HphI	GGTGA	2 cut(s)	25, 194
Hpy166II	GTNNAC	3 cut(s)	70, 103, 286
Hpy188I	TCNGA	3 cut(s)	243, 295, 319
Hpy188III	TCNNGA	3 cut(s)	59, 167, 420
Hpy8I	GTNNAC	3 cut(s)	70, 103, 286
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	179
HpyCH4IV	ACGT	4 cut(s)	9, 117, 122, 307
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	73, 78
HpySE526I	ACGT	4 cut(s)	9, 117, 122, 307
Hsp92I	GRCGYC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	139, 295, 355
LpnPI	CCDG	7 cut(s)	106, 203, 255, 260, 277, 293, 344
Lsp1109I	GCAGC	2 cut(s)	265, 360
LweI	GCATC	1 cut(s)	137
MaeII	ACGT	4 cut(s)	9, 117, 122, 307
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	141, 297, 357
MboI	GATC	3 cut(s)	139, 295, 355
MboII	GAAGA	2 cut(s)	213, 404
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	65, 105
MnlI	CCTC	8 cut(s)	41, 146, 151, 197, 200, 203, 299, 313
MseI	TTAA	1 cut(s)	405
MspI	CCGG	5 cut(s)	93, 190, 264, 280, 331
MspR9I	CCNGG	3 cut(s)	265, 281, 332
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	3 cut(s)	265, 281, 332
NdeII	GATC	3 cut(s)	139, 295, 355
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	62, 244
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	255, 375
PleI	GAGTC	2 cut(s)	65, 104
PpsI	GAGTC	2 cut(s)	65, 104
PspFI	CCCAGC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	254, 374
Sau3AI	GATC	3 cut(s)	139, 295, 355
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	65, 105
ScrFI	CCNGG	3 cut(s)	265, 281, 332
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	263, 279, 330
TaiI	ACGT	4 cut(s)	12, 120, 125, 310
TaqI	TCGA	2 cut(s)	138, 382
TasI	AATT	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	62, 244
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	253, 373
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	2 cut(s)	16, 55
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.