Rh5AG315200

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
46014031 .. 46048289
34259 bp
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UTR
Exon/CDS
Intron
Rh5AG315200.1

Sequence Viewer

Length: 336 bp
ATGGCTAGCGGATTCAAGGATAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAACTCCGCAGTGGTCGCCTTGTGGCCATCAAGATTTTGAGTGAGTCCAAAACTAATGGGCAAGATTTTATCAATGAGGTTGCTACTATCGGAAGGATTCGCCATGTTAACGTGGTGCGACTTATAGGCTTCTGTGTTGATCATTCAAATCGTGCACTTATCTATGATTTCATGTCAAATGGCTCTCTTGACAACCCAGATTCTATAAACATTCAATTAATTCATACACGTCAAGCAACATCTCAAATCTCATTCCATTCCGTAACAAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.25

Weight (kDa)

9.58

Isoelectric Point (pI)

24.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 85 6.2e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 88 5.8e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018471)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 2 cut(s) 9, 67
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 3 cut(s) 16, 207, 275
AjiI CACGTC 1 cut(s) 290
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
Alw21I GWGCWC 1 cut(s) 217
Alw44I GTGCAC 1 cut(s) 213
AoxI GGCC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 213
AseI ATTAAT 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 95
BclI TGATCA 1 cut(s) 199
BfaI CTAG 2 cut(s) 6, 334
BmgBI CACGTC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 46
BmtI GCTAGC 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 217
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 217
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 9, 67
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 46
BspOI GCTAGC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 51
BssMI GATC 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 164, 232
CviJI RGCY 5 cut(s) 5, 39, 86, 189, 243
CviKI_1 RGCY 5 cut(s) 5, 39, 86, 189, 243
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 84
FaeI CATG 2 cut(s) 167, 235
FaiI YATR 6 cut(s) 165, 185, 225, 233, 266, 285
FatI CATG 2 cut(s) 163, 231
FbaI TGATCA 1 cut(s) 199
FspBI CTAG 2 cut(s) 6, 334
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 2 cut(s) 167, 235
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 12, 104, 157, 260
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 52, 169, 215
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 91, 248
Hpy8I GTNNAC 3 cut(s) 52, 169, 215
HpyAV CCTTC 2 cut(s) 26, 147
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 171, 289
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 171, 289
Hsp92II CATG 2 cut(s) 167, 235
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 1 cut(s) 270
MaeI CTAG 2 cut(s) 6, 334
MaeII ACGT 2 cut(s) 171, 289
MaeIII GTNAC 1 cut(s) 322
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 3 cut(s) 23, 275, 279
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 2 cut(s) 29, 130
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 168, 278
Msp20I TGGCCA 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 167, 235
NlaIV GGNNCC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 12, 157, 260
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 168, 278
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 141, 174, 292
Sse9I AATT 3 cut(s) 23, 275, 279
SsiI CCGC 2 cut(s) 9, 67
SspMI CTAG 2 cut(s) 6, 334
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 174, 292
TasI AATT 3 cut(s) 23, 275, 279
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 3 cut(s) 12, 157, 260
Tru1I TTAA 2 cut(s) 168, 278
Tru9I TTAA 2 cut(s) 168, 278
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 220, 272
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 213
VspI ATTAAT 1 cut(s) 278
XspI CTAG 2 cut(s) 6, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.