Rh5BG323900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018471
Physical Location & Seq
Forward (+)
43685043 .. 43701043
16001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG323900.1

Sequence Viewer

Length: 633 bp
ATGTTCCGTTGGTTCACGATTATCATCGAGGACATCTCCATTATCATCAAAGTCATCCCAGGCTACATCCTATACCACGTGCTTGGCCTGCGTATTAGTTTCTTCAAGGTTGACCAGTGGCTTCTGGTCTCTGTGGTCGTTGACTGCGGAATATTCGCAGCAGCAAAACTTTCAATTGGCTTTCCATTTGTAATTGCAATACTAATATACAAATGGCGAAGGAGGCACTTGTCAATGTATGACAATATTGAAGACTTTCTGCAGAGTAACAGTAATCTCATGCCGGTAAGGTACTCTTACTCAGAAATCAAAAAGATGGCTAGCGGATTCAAGGACAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAACTCCGCAGTGGTCGCCTTGTGGCCATCAAGATTTTGACCCCATTTCGAAACCGTGAGAATTGGAGAAATGTAAGAACTCAAGTAAGAGATAAAACCAGTCAACAGAGGCCTCACTCACTCAGACAGCAGCCGCCGCAATCTCTACCTCCGCCGGTCATCGTCCCAGTCCCATTATTCGAAATCGTGAGCGGCACGTCACTGCACAGCACCCTCAGCAGCCGCCGCCTCAGCCTCCACCCGCCTTTCCGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

24.26

Weight (kDa)

10.5

Isoelectric Point (pI)

64.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018471)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04200
malus_domestica MD02G1250600.v1.1
pyrus_communis pycom01g08890
rosa_chinensis RchiOBHm_Chr1g0325141 RchiOBHm_Chr1g0328261
rosa_multiflora Rmu_sc0001534.1_g000006
rosa_samantha Rh5AG315200 Rh5AG315600 Rh5BG323900 Rh5BG324800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 567
AccIII TCCGGA 1 cut(s) 624
AcoI YGGCCR 1 cut(s) 399
AcvI CACGTG 1 cut(s) 79
AfaI GTAC 2 cut(s) 293, 368
AgsI TTSAA 4 cut(s) 106, 174, 251, 331
AjiI CACGTC 1 cut(s) 573
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
Alw26I GTCTC 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 3 cut(s) 85, 399, 485
ApeKI GCWGC 4 cut(s) 158, 161, 505, 594
Asp700I GAANNNNTTC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 2 cut(s) 424, 555
AsuNHI GCTAGC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 359
BbrPI CACGTG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 258
BbvCI CCTCAGC 2 cut(s) 590, 605
BbvI GCAGC 4 cut(s) 170, 173, 517, 606
BccI CCATC 2 cut(s) 310, 410
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 9 cut(s) 159, 162, 506, 509, 512, 568, 595, 598, 601
BlsI GCNGC 9 cut(s) 160, 163, 507, 510, 513, 569, 596, 599, 602
Bme1390I CCNGG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 573
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 536
BmtI GCTAGC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bpu10I CCTNAGC 2 cut(s) 590, 605
Bpu14I TTCGAA 2 cut(s) 424, 555
BpuEI CTTGAG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 624
Bse118I RCCGGY 2 cut(s) 283, 529
Bse1I ACTGG 3 cut(s) 115, 474, 542
Bse8I GATNNNNATC 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 624
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 54, 66
BseJI GATNNNNATC 1 cut(s) 23
BseMII CTCAG 4 cut(s) 315, 511, 604, 619
BseNI ACTGG 3 cut(s) 115, 474, 542
BseXI GCAGC 4 cut(s) 170, 173, 517, 606
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 3 cut(s) 87, 401, 487
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 3 cut(s) 284, 530, 625
BslFI GGGAC 2 cut(s) 524, 530
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 524, 530
BsnI GGCC 3 cut(s) 87, 401, 487
Bso31I GGTCTC 1 cut(s) 133
Bsp119I TTCGAA 2 cut(s) 424, 555
Bsp13I TCCGGA 1 cut(s) 624
Bsp1407I TGTACA 1 cut(s) 366
BspANI GGCC 3 cut(s) 87, 401, 487
BspCNI CTCAG 4 cut(s) 314, 510, 603, 618
BspEI TCCGGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 264
BspOI GCTAGC 1 cut(s) 324
BspT104I TTCGAA 2 cut(s) 424, 555
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 567
BsrFI RCCGGY 2 cut(s) 283, 529
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 3 cut(s) 115, 474, 542
BssAI RCCGGY 2 cut(s) 283, 529
BssECI CCNNGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 272, 364, 431
BstAUI TGTACA 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 79
BstBI TTCGAA 2 cut(s) 424, 555
BstC8I GCNNGC 2 cut(s) 89, 322
BstDEI CTNAG 4 cut(s) 301, 497, 590, 605
BstF5I GGATG 2 cut(s) 54, 66
BstMAI GTCTC 1 cut(s) 133
BstMWI GCNNNNNNNGC 7 cut(s) 88, 223, 390, 511, 591, 600, 606
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 260
BstV1I GCAGC 4 cut(s) 170, 173, 517, 606
BstV2I GAAGAC 1 cut(s) 258
BstXI CCANNNNNNTGG 1 cut(s) 83
BsuRI GGCC 3 cut(s) 87, 401, 487
BtrI CACGTC 1 cut(s) 573
BtsCI GGATG 2 cut(s) 54, 66
BtsI GCAGTG 2 cut(s) 391, 575
BtsIMutI CAGTG 3 cut(s) 122, 391, 575
Cac8I GCNNGC 2 cut(s) 89, 322
Cfr10I RCCGGY 2 cut(s) 283, 529
Csp6I GTAC 2 cut(s) 292, 367
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 292, 367
DdeI CTNAG 4 cut(s) 301, 497, 590, 605
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 1 cut(s) 516
Eco147I AGGCCT 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 283
FaiI YATR 4 cut(s) 73, 208, 240, 281
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 2 cut(s) 524, 530
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 624
Fnu4HI GCNGC 9 cut(s) 159, 162, 506, 509, 512, 568, 595, 598, 601
FokI GGATG 2 cut(s) 41, 53
Fsp4HI GCNGC 9 cut(s) 159, 162, 506, 509, 512, 568, 595, 598, 601
FspBI CTAG 1 cut(s) 321
GluI GCNGC 9 cut(s) 159, 162, 506, 509, 512, 568, 595, 598, 601
HaeIII GGCC 3 cut(s) 87, 401, 487
HapII CCGG 3 cut(s) 284, 530, 625
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 3 cut(s) 112, 142, 479
HindII GTYRAC 3 cut(s) 112, 142, 479
HinfI GANTC 1 cut(s) 327
HpaII CCGG 3 cut(s) 284, 530, 625
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 5 cut(s) 15, 112, 142, 367, 479
Hpy188I TCNGA 2 cut(s) 304, 500
Hpy188III TCNNGA 4 cut(s) 16, 406, 562, 625
Hpy8I GTNNAC 5 cut(s) 15, 112, 142, 367, 479
HpyAV CCTTC 2 cut(s) 213, 341
HpyCH4III ACNGT 3 cut(s) 272, 364, 431
HpyCH4IV ACGT 2 cut(s) 78, 572
HpyCH4V TGCA 3 cut(s) 197, 262, 580
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 223, 390, 511, 591, 600, 606
HpyF3I CTNAG 4 cut(s) 301, 497, 590, 605
HpySE526I ACGT 2 cut(s) 78, 572
Hsp92II CATG 1 cut(s) 283
Kpn2I TCCGGA 1 cut(s) 624
LpnPI CCDG 9 cut(s) 45, 72, 101, 110, 128, 297, 487, 543, 555
Lsp1109I GCAGC 4 cut(s) 170, 173, 517, 606
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 78, 572
MaeIII GTNAC 2 cut(s) 266, 573
MbiI CCGCTC 1 cut(s) 567
MboII GAAGA 2 cut(s) 94, 263
MfeI CAATTG 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 4 cut(s) 174, 192, 338, 436
MluNI TGGCCA 1 cut(s) 401
MnlI CCTC 9 cut(s) 22, 216, 344, 477, 498, 534, 599, 614, 620
Mox20I TGGCCA 1 cut(s) 401
MroI TCCGGA 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 3 cut(s) 284, 530, 625
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 88, 223, 390, 511, 591, 600, 606
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 573
NspV TTCGAA 2 cut(s) 424, 555
PceI AGGCCT 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 9 cut(s) 160, 163, 507, 510, 513, 569, 596, 599, 602
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 264
RsaI GTAC 2 cut(s) 293, 368
RsaNI GTAC 2 cut(s) 292, 367
SatI GCNGC 9 cut(s) 159, 162, 506, 509, 512, 568, 595, 598, 601
ScrFI CCNGG 1 cut(s) 60
SetI ASST 5 cut(s) 81, 111, 293, 526, 575
SfcI CTRYAG 1 cut(s) 260
SfuI TTCGAA 2 cut(s) 424, 555
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 4 cut(s) 174, 192, 338, 436
SseBI AGGCCT 1 cut(s) 487
SspI AATATT 2 cut(s) 153, 247
SspMI CTAG 1 cut(s) 321
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 272, 364, 431
TaiI ACGT 2 cut(s) 81, 575
TaqI TCGA 3 cut(s) 27, 424, 555
TasI AATT 4 cut(s) 174, 192, 338, 436
TatI WGTACW 1 cut(s) 366
TauI GCSGC 5 cut(s) 511, 514, 570, 600, 603
TfiI GAWTC 1 cut(s) 327
TscAI CASTG 3 cut(s) 122, 391, 582
TseFI GTSAC 1 cut(s) 573
TseI GCWGC 4 cut(s) 158, 161, 505, 594
Tsp45I GTSAC 1 cut(s) 573
TspRI CASTG 3 cut(s) 122, 391, 582
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.