Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0023476

Physical Location & Seq

Genomic Coordinates Reverse (-)

2418813 .. 2422717

Gene Structure 3905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTTGCCCTGCTCGGCTTTCCCACTACAAAAGCCGACGACCTCGCCCATATCTGCCCAAACACCACCGTCTTCACCCCAAACTCCACCTTTCAAACCAATCGCGACCAATTGCTGTCTACCCTTGTCTCTAAAGCCACCCGTGACACCGGCTTTTACGAGACCACTGCTGGCGGCCAGATCTCAACAGAGACCGTGGACGGCCTCTTCCTCTGCCGCGGTGACGTGTCCATAGACGTTTGCAAAGTCTGCGTGGAAACCGCGGCCTCAGAGTTGTACCCCTTCTACGCATCACAGCCGACGGACGATCTACCTCCTTCGCCAGCATCAATTGCATCTCCTCCGCCAGCCCCGGTGGCAACGGCACGTAAAGATTTTCTATTTTCTCATTGTTCTCTGATTTTTTGTGTTGCAAAGATTGCTATATATGCTTGTCTTTATAATGCGCCTAGATGCTCCATAGCTAGGATATTTTTTATTTTATTTTTTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

165

Amino Acids

17.94

Weight (kDa)

5.2

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	19 - 90	3.1e-15	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0023476)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG034700 Rh5BG037400 Rh6DG173800 Rh7AG294200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	3 cut(s)	105, 219, 263
AciI	CCGC	6 cut(s)	174, 217, 219, 261, 263, 344
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw26I	GTCTC	3 cut(s)	133, 155, 185
AoxI	GGCC	3 cut(s)	175, 202, 264
AspLEI	GCGC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	67, 233
BbsI	GAAGAC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	217, 378
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	133, 155, 185
BfaI	CTAG	2 cut(s)	450, 465
BglI	GCCNNNNNGGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	175, 217, 264
BlsI	GCNGC	3 cut(s)	176, 218, 265
Bme1390I	CCNGG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	4 cut(s)	299, 335, 344, 443
BpiI	GAAGAC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	368
BsaI	GGTCTC	2 cut(s)	155, 185
BsaJI	CCNNGG	4 cut(s)	195, 217, 261, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	195, 217, 261, 351
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	330
Bsh1236I	CGCG	3 cut(s)	105, 219, 263
BshFI	GGCC	3 cut(s)	177, 204, 266
BsiSI	CCGG	2 cut(s)	150, 353
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	3 cut(s)	133, 155, 185
BsnI	GGCC	3 cut(s)	177, 204, 266
Bso31I	GGTCTC	2 cut(s)	155, 185
Bsp143I	GATC	2 cut(s)	180, 307
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	6 cut(s)	174, 217, 219, 261, 263, 344
BspANI	GGCC	3 cut(s)	177, 204, 266
BspCNI	CTCAG	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	105, 219, 263
BspTNI	GGTCTC	2 cut(s)	155, 185
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	4 cut(s)	195, 217, 261, 351
BssMI	GATC	2 cut(s)	180, 307
Bst4CI	ACNGT	2 cut(s)	70, 196
Bst6I	CTCTTC	1 cut(s)	212
BstAPI	GCANNNNNTGC	3 cut(s)	249, 332, 419
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	172, 324, 348
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	3 cut(s)	195, 217, 261
BstFNI	CGCG	3 cut(s)	105, 219, 263
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	183, 310
BstMAI	GTCTC	3 cut(s)	133, 155, 185
BstMBI	GATC	2 cut(s)	180, 307
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 332, 356, 419, 428
BstSCI	CCNGG	1 cut(s)	351
BstUI	CGCG	3 cut(s)	105, 219, 263
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	177, 204, 266
BtgI	CCRYGG	3 cut(s)	195, 217, 261
BtrI	CACGTC	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	172, 324, 348
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	149
Cfr42I	CCGCGG	2 cut(s)	220, 264
Csp6I	GTAC	1 cut(s)	277
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	2 cut(s)	182, 309
DpnII	GATC	2 cut(s)	180, 307
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	155, 185
FaiI	YATR	7 cut(s)	51, 233, 425, 427, 429, 441, 461
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	175, 217, 264
Fsp4HI	GCNGC	3 cut(s)	175, 217, 264
FspBI	CTAG	2 cut(s)	450, 465
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	3 cut(s)	175, 217, 264
HaeIII	GGCC	3 cut(s)	177, 204, 266
HapII	CCGG	2 cut(s)	150, 353
HhaI	GCGC	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HpaII	CCGG	2 cut(s)	150, 353
HphI	GGTGA	2 cut(s)	67, 233
Hpy166II	GTNNAC	2 cut(s)	120, 199
Hpy188I	TCNGA	3 cut(s)	271, 399, 497
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	120, 199
Hpy99I	CGWCG	2 cut(s)	41, 304
HpyAV	CCTTC	2 cut(s)	292, 327
HpyCH4III	ACNGT	2 cut(s)	70, 196
HpyCH4IV	ACGT	3 cut(s)	225, 237, 367
HpyCH4V	TGCA	3 cut(s)	243, 335, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 332, 356, 419, 428
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	3 cut(s)	225, 237, 367
HspAI	GCGC	1 cut(s)	446
KspI	CCGCGG	2 cut(s)	220, 264
Kzo9I	GATC	2 cut(s)	180, 307
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	7 cut(s)	23, 156, 163, 191, 336, 360, 366
LweI	GCATC	4 cut(s)	299, 335, 344, 443
MaeI	CTAG	2 cut(s)	450, 465
MaeII	ACGT	3 cut(s)	225, 237, 367
MaeIII	GTNAC	2 cut(s)	143, 221
MalI	GATC	2 cut(s)	182, 309
MboI	GATC	2 cut(s)	180, 307
MboII	GAAGA	2 cut(s)	64, 199
MfeI	CAATTG	2 cut(s)	110, 330
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	2 cut(s)	110, 330
MnlI	CCTC	6 cut(s)	53, 215, 221, 277, 324, 351
MspA1I	CMGCKG	2 cut(s)	219, 263
MspI	CCGG	2 cut(s)	150, 353
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	2 cut(s)	110, 330
MvnI	CGCG	3 cut(s)	105, 219, 263
MwoI	GCNNNNNNNGC	5 cut(s)	249, 332, 356, 419, 428
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	180, 307
NmuCI	GTSAC	2 cut(s)	143, 221
NruI	TCGCGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	176, 218, 265
Ppu21I	YACGTR	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SacII	CCGCGG	2 cut(s)	220, 264
SatI	GCNGC	3 cut(s)	175, 217, 264
Sau3AI	GATC	2 cut(s)	180, 307
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	7 cut(s)	45, 92, 228, 240, 316, 370, 466
SfaNI	GCATC	4 cut(s)	299, 335, 344, 443
Sfr303I	CCGCGG	2 cut(s)	220, 264
SgrBI	CCGCGG	2 cut(s)	220, 264
Sse9I	AATT	2 cut(s)	110, 330
SsiI	CCGC	6 cut(s)	174, 217, 219, 261, 263, 344
SspMI	CTAG	2 cut(s)	450, 465
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	70, 196
TaiI	ACGT	3 cut(s)	228, 240, 370
TasI	AATT	2 cut(s)	110, 330
TauI	GCSGC	3 cut(s)	177, 219, 266
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	143, 221
Tsp45I	GTSAC	2 cut(s)	143, 221
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	2 cut(s)	450, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.