Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0023476

Physical Location & Seq

Genomic Coordinates Forward (+)

2627573 .. 2629211

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTACCCTGCTCGGCTTTCCCACTACAAAAGCCGACTACCTCTACCACGTCTGCCCAGATGCCACCGTCTTCACCCCAGACTCCACCTTTCAAACCTATCGCACCCAATTGCTGTCTACCCTTGTCTCTAATGCCACCCATAAGAACCGCTTTTACCAGACCTCTGCTGGCGGCCAGATCTCAACAGAGACCGTGGAGGGCCTCTTCCTCTGCCGCGGTGACGTGTCCACAGACGCTTGCGAAGACTGCGTGGACACCGCGGCCTCAGAGGTTGTCCAAAGGTACGAGGTGTACCCCTTCTATTCAACACCGGTCGATATGCCTCCTCCGCCAGCCCCTGTAGCACCTCCTCCTCCAGCCCCTGTAGCACCTCCTCCGCCAGCCCCGGTGGCAACGGTACGTAAAGGAAAAAATAAACTCTCATCCATAGTCATTCCTAGCATTCTTGCTCCCGTTGCTCTCTGTGTGCTAGTTGTGGTTGTGGCCAGATGTTTCATTTGCAAATTAAAAAGAGCCAAAGGACAACAAAATGAAGCCGAAAATGATATGACAACTGTTGAATCCTTGCAATTTGACTTGGGAACTATCGAAGATGCCACGAAAAAGTTTTCTGCCGATAACATGTTAGGTGAAGGCGGATTTGGTCAAGTATTCAAGTTTCAAGATGTGCATACAATTGATGTTTCAAAACTTGGGCATGGAATGGAAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

239

Amino Acids

25.8

Weight (kDa)

5.1

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	19 - 92	1.5e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023476)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG034700 Rh5BG037400 Rh6DG173800 Rh7AG294200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	2 cut(s)	219, 263
AciI	CCGC	9 cut(s)	151, 174, 217, 219, 261, 263, 332, 380, 639
AcoI	YGGCCR	2 cut(s)	175, 486
AfaI	GTAC	3 cut(s)	287, 296, 402
AflIII	ACRYGT	2 cut(s)	225, 624
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	6 cut(s)	95, 309, 563, 658, 665, 690
AjiI	CACGTC	2 cut(s)	52, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
Alw26I	GTCTC	2 cut(s)	133, 185
AlwNI	CAGNNNCTG	2 cut(s)	341, 365
AoxI	GGCC	4 cut(s)	175, 202, 264, 486
AsiGI	ACCGGT	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	67, 233, 644
BalI	TGGCCA	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	64, 252
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	133, 185
BfaI	CTAG	2 cut(s)	441, 473
BfmI	CTRYAG	2 cut(s)	342, 366
BglI	GCCNNNNNGGC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	175, 217, 264
BlsI	GCNGC	3 cut(s)	176, 218, 265
Bme1390I	CCNGG	1 cut(s)	389
BmgBI	CACGTC	2 cut(s)	52, 226
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	52, 586
BpiI	GAAGAC	2 cut(s)	64, 252
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	195, 217, 261, 387
BsaWI	WCCGGW	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	313
BseDI	CCNNGG	4 cut(s)	195, 217, 261, 387
BseGI	GGATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	4 cut(s)	318, 342, 345, 366
Bsh1236I	CGCG	2 cut(s)	219, 263
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	177, 204, 266, 488
BshTI	ACCGGT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	314, 389
BsmAI	GTCTC	2 cut(s)	133, 185
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	4 cut(s)	177, 204, 266, 488
Bso31I	GGTCTC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	9 cut(s)	151, 174, 217, 219, 261, 263, 332, 380, 639
BspANI	GGCC	4 cut(s)	177, 204, 266, 488
BspCNI	CTCAG	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	219, 263
BspTNI	GGTCTC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	195, 217, 261, 387
BssMI	GATC	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	70, 196, 400, 559
Bst6I	CTCTTC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	172, 241, 336, 384
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	3 cut(s)	195, 217, 261
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	2 cut(s)	219, 263
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	133, 185
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	6 cut(s)	249, 331, 344, 368, 392, 458
BstNSI	RCATGY	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	342, 366
BstSNI	TACGTA	1 cut(s)	404
BstUI	CGCG	2 cut(s)	219, 263
BstV2I	GAAGAC	2 cut(s)	64, 252
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	177, 204, 266, 488
BtgI	CCRYGG	3 cut(s)	195, 217, 261
BtrI	CACGTC	2 cut(s)	52, 226
BtsCI	GGATG	1 cut(s)	425
Cac8I	GCNNGC	4 cut(s)	172, 241, 336, 384
CaiI	CAGNNNCTG	2 cut(s)	341, 365
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	202
Cfr42I	CCGCGG	2 cut(s)	220, 264
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	286, 295, 401
CspAI	ACCGGT	1 cut(s)	313
CviAII	CATG	2 cut(s)	625, 701
CviQI	GTAC	3 cut(s)	286, 295, 401
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	175, 486
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	3 cut(s)	321, 369, 654
Eco105I	TACGTA	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	202
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	2 cut(s)	628, 704
FaiI	YATR	7 cut(s)	144, 323, 431, 551, 626, 675, 702
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	2 cut(s)	624, 700
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	175, 217, 264
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	175, 217, 264
FspBI	CTAG	2 cut(s)	441, 473
GluI	GCNGC	3 cut(s)	175, 217, 264
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	4 cut(s)	177, 204, 266, 488
HapII	CCGG	2 cut(s)	314, 389
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	628, 704
HinfI	GANTC	2 cut(s)	83, 563
HpaII	CCGG	2 cut(s)	314, 389
HphI	GGTGA	3 cut(s)	67, 233, 644
Hpy166II	GTNNAC	4 cut(s)	120, 231, 256, 295
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	4 cut(s)	120, 231, 256, 295
HpyAV	CCTTC	2 cut(s)	310, 629
HpyCH4III	ACNGT	4 cut(s)	70, 196, 400, 559
HpyCH4IV	ACGT	3 cut(s)	51, 225, 403
HpyCH4V	TGCA	3 cut(s)	504, 571, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	249, 331, 344, 368, 392, 458
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	3 cut(s)	51, 225, 403
Hsp92II	CATG	2 cut(s)	628, 704
KspI	CCGCGG	2 cut(s)	220, 264
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	2 cut(s)	52, 586
MaeI	CTAG	2 cut(s)	441, 473
MaeII	ACGT	3 cut(s)	51, 225, 403
MaeIII	GTNAC	2 cut(s)	4, 221
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	64, 199, 257, 605
MfeI	CAATTG	2 cut(s)	110, 678
MflI	RGATCY	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	4 cut(s)	110, 506, 572, 678
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	2 cut(s)	219, 263
MspI	CCGG	2 cut(s)	314, 389
MspR9I	CCNGG	1 cut(s)	389
MunI	CAATTG	2 cut(s)	110, 678
Mva1269I	GAATGC	1 cut(s)	444
MvnI	CGCG	2 cut(s)	219, 263
MwoI	GCNNNNNNNGC	6 cut(s)	249, 331, 344, 368, 392, 458
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	628, 704
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	628
PciI	ACATGT	1 cut(s)	624
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	563
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	176, 218, 265
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	404
PscI	ACATGT	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	4
PspPI	GGNCC	1 cut(s)	202
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstNI	CAGNNNCTG	2 cut(s)	341, 365
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	3 cut(s)	287, 296, 402
RsaNI	GTAC	3 cut(s)	286, 295, 401
SacII	CCGCGG	2 cut(s)	220, 264
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	175, 217, 264
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	389
SfaNI	GCATC	2 cut(s)	52, 586
SfcI	CTRYAG	2 cut(s)	342, 366
Sfr303I	CCGCGG	2 cut(s)	220, 264
SgrBI	CCGCGG	2 cut(s)	220, 264
SnaBI	TACGTA	1 cut(s)	404
Sse9I	AATT	4 cut(s)	110, 506, 572, 678
SsiI	CCGC	9 cut(s)	151, 174, 217, 219, 261, 263, 332, 380, 639
SspMI	CTAG	2 cut(s)	441, 473
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	70, 196, 400, 559
TaiI	ACGT	3 cut(s)	54, 228, 406
TaqI	TCGA	2 cut(s)	318, 591
TasI	AATT	4 cut(s)	110, 506, 572, 678
TauI	GCSGC	3 cut(s)	177, 219, 266
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	487, 549
XceI	RCATGY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	2 cut(s)	441, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.