Rh6DG173800

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0023476
Physical Location & Seq
Forward (+)
30530923 .. 30534791
3869 bp
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UTR
Exon/CDS
Intron
Rh6DG173800.1

Sequence Viewer

Length: 273 bp
ATGTCCGGAAATTATGCCAGCATTGGTGAGCAAAGCGTCTCAGGATCTGTCCCTGCTATCATTGAAATAGTCGAAGACAGAGTGGGGGAACCCTTGAAGCCTGAGGTTAGCAATGGACTTGATGGTGATAAAGACAGAGATGAAGGTCGTTCTAAATCATTTAAGGCAAACAAAGAAGAAGATGACAACATGAGGATAACAGCAGCAAATGTTGCCTCCCGTGCTGCTGTTGGAGGAGATGACTTGTTGGTCAAAATGGCAACTTATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

90

Amino Acids

9.5

Weight (kDa)

4.53

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 34 - 78 4.3e-06 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023476)

Species Orthologous Gene IDs
rosa_samantha Rh5BG034700 Rh5BG037400 Rh6DG173800 Rh7AG294200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 5
AclWI GGATC 1 cut(s) 52
AgsI TTSAA 2 cut(s) 65, 97
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 203, 224
AsuHPI GGTGA 2 cut(s) 38, 137
AxyI CCTNAGG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 211, 215
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 43
BisI GCNGC 2 cut(s) 204, 225
BlsI GCNGC 2 cut(s) 205, 226
BmiI GGNNCC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 5
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 5
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 54, 93
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 211, 215
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 43
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 53, 94
BspEI TCCGGA 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 118
BssMI GATC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 40, 102
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 212, 221
BstV1I GCAGC 2 cut(s) 211, 215
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 47
CseI GACGC 1 cut(s) 25
CviAII CATG 1 cut(s) 190
CviJI RGCY 2 cut(s) 100, 270
CviKI_1 RGCY 2 cut(s) 100, 270
DdeI CTNAG 2 cut(s) 40, 102
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 15, 191, 267
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 204, 225
Fsp4HI GCNGC 2 cut(s) 204, 225
GluI GCNGC 2 cut(s) 204, 225
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 25
Hin1II CATG 1 cut(s) 193
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 38, 137
Hpy188III TCNNGA 2 cut(s) 6, 42
HpyAV CCTTC 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 221
HpyF3I CTNAG 2 cut(s) 40, 102
Hsp92II CATG 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 5
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 5 cut(s) 19, 27, 31, 66, 114
Lsp1109I GCAGC 2 cut(s) 211, 215
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 3 cut(s) 86, 188, 191
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 4 cut(s) 97, 186, 226, 227
MroI TCCGGA 1 cut(s) 5
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 212, 221
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 205, 226
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 44
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 204, 225
Sau3AI GATC 1 cut(s) 44
SetI ASST 2 cut(s) 108, 148
Sse9I AATT 1 cut(s) 10
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 10
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 2 cut(s) 203, 224
TspDTI ATGAA 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.