Rh5BG094600

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
8607613 .. 8607843
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG094600.1

Sequence Viewer

Length: 231 bp
ATGGAGCACAGAGCTATGGTGAACTCTGAGCAAGAGAGGATCTCGATCGCTATGTTCTTCAACCCCAAATTCGAGGCAGAAATTGGACCATTGACCAGCTTGATAACCCCAGAAAATCCACCTCTGTTCAAAAGGATTGGGATGGAACAGTACGTCCAAGATTTCTACACCCGCCGTAAGCTCGACGGGAAATCATATTTGGAGCAAATGAGGCTCCAGAATGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.98

Weight (kDa)

6.57

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021265)

Species Orthologous Gene IDs
pyrus_communis pycom05g26900
rosa_multiflora Rmu_sc0000059.1_g000008 Rmu_sc0038764.1_g000001
rosa_roxburghii Rroxscaffold_1G00063910
rosa_samantha Rh5BG094600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 68
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 61, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 3 cut(s) 14, 99, 181
AluI AGCT 3 cut(s) 14, 99, 181
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 44
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 44
BseMII CTCAG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 39, 45
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 1 cut(s) 47
BssMI GATC 2 cut(s) 39, 45
Bst4CI ACNGT 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 2 cut(s) 42, 48
BstMBI GATC 2 cut(s) 39, 45
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BtsCI GGATG 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 151
CviJI RGCY 4 cut(s) 14, 99, 181, 214
CviKI_1 RGCY 4 cut(s) 14, 99, 181, 214
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 41, 47
DpnII GATC 2 cut(s) 39, 45
Eco47I GGWCC 1 cut(s) 86
FaiI YATR 3 cut(s) 17, 53, 196
FauI CCCGC 1 cut(s) 179
FokI GGATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 200
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 43, 217
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 153
Kzo9I GATC 2 cut(s) 39, 45
LmnI GCTCC 3 cut(s) 4, 202, 219
LpnPI CCDG 2 cut(s) 109, 123
MaeII ACGT 1 cut(s) 153
MalI GATC 2 cut(s) 41, 47
MboI GATC 2 cut(s) 39, 45
MboII GAAGA 1 cut(s) 49
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 68, 81
MnlI CCTC 4 cut(s) 30, 67, 132, 204
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 2 cut(s) 39, 45
NlaIV GGNNCC 1 cut(s) 215
Ple19I CGATCG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 39
PvuI CGATCG 1 cut(s) 48
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
Sau3AI GATC 2 cut(s) 39, 45
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 16, 101, 124, 156, 183
SinI GGWCC 1 cut(s) 86
Sse9I AATT 2 cut(s) 68, 81
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 44, 72, 183
TasI AATT 2 cut(s) 68, 81
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.