Rh5BG118600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0026414
Physical Location & Seq
Forward (+)
11170696 .. 11171049
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG118600.1

Sequence Viewer

Length: 354 bp
ATGGGCCTAGAAGAAACCAAAGTAGTCCTGCCCAACACTCCAAAGTCCAAACACAGCATTCAAAACGTCTCACCCGCTCAATCCTCCTCCATTTCACAACTGAAACTCTCAAAACCAAACAGTGAAACCCTAAACCCCACAATCACAAATTCACAATGGCCAAATCCTCCCGAAGACGCAAGAGAATCTGCCGAAACTGGACGGAGCTCCCTGAGAAAGCTATGGCGTCGGTACTCTCACGGATCGACGGAGCTCCCTGAGAAAGCTACGGCGTCGATACTCTCACGGCTCGGAGCGATCGAGATCCTGGAGAGCGCTCAGAAAGTGTGCATGAAATGGCGCAAACTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

117

Amino Acids

13.0

Weight (kDa)

9.64

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026414)

Species Orthologous Gene IDs
rosa_samantha Rh5BG118600 Rh5DG117600 Rh7BG414100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 250, 298
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 148
AcyI GRCGYC 2 cut(s) 226, 272
AfaI GTAC 1 cut(s) 233
AfeI AGCGCT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 207, 220, 253, 266
AluI AGCT 4 cut(s) 207, 220, 253, 266
Alw21I GWGCWC 2 cut(s) 209, 255
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 250, 298
Aor51HI AGCGCT 1 cut(s) 316
AoxI GGCC 2 cut(s) 4, 158
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 2 cut(s) 317, 342
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 63
BalI TGGCCA 1 cut(s) 160
BanII GRGCYC 2 cut(s) 209, 255
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 209, 255
BceAI ACGGC 2 cut(s) 285, 302
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 8, 352
BfoI RGCGCY 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 302
BsaHI GRCGYC 2 cut(s) 226, 272
Bse1I ACTGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 302
BseBI CCWGG 1 cut(s) 308
BseJI GATNNNNATC 1 cut(s) 302
BseMII CTCAG 3 cut(s) 203, 249, 332
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 6, 160
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 2 cut(s) 209, 255
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 6, 160
Bsp1286I GDGCHC 2 cut(s) 209, 255
Bsp143I GATC 3 cut(s) 242, 297, 303
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 6, 160
BspCNI CTCAG 3 cut(s) 204, 250, 331
BspPI GGATC 2 cut(s) 250, 298
BsrBI CCGCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 202
BssMI GATC 3 cut(s) 242, 297, 303
BssNI GRCGYC 2 cut(s) 226, 272
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 2 cut(s) 226, 272
BstAPI GCANNNNNTGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 212, 258, 318
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 2 cut(s) 317, 342
BstKTI GATC 3 cut(s) 245, 300, 306
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 242, 297, 303
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 2 cut(s) 6, 160
BtsIMutI CAGTG 1 cut(s) 127
CfoI GCGC 2 cut(s) 317, 342
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 3 cut(s) 185, 215, 261
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 331
CviJI RGCY 7 cut(s) 6, 160, 207, 220, 253, 266, 289
CviKI_1 RGCY 7 cut(s) 6, 160, 207, 220, 253, 266, 289
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 3 cut(s) 212, 258, 318
DpnI GATC 3 cut(s) 244, 299, 305
DpnII GATC 3 cut(s) 242, 297, 303
EaeI YGGCCR 1 cut(s) 158
Ecl136II GAGCTC 2 cut(s) 207, 253
Eco24I GRGCYC 2 cut(s) 209, 255
Eco47III AGCGCT 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 207, 253
EcoICRI GAGCTC 2 cut(s) 207, 253
EcoRII CCWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 209, 255
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 334
FaiI YATR 2 cut(s) 223, 332
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 209, 255
FspBI CTAG 2 cut(s) 8, 352
GlaI GCGC 2 cut(s) 316, 341
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 2 cut(s) 6, 160
HgaI GACGC 3 cut(s) 185, 215, 261
HhaI GCGC 2 cut(s) 317, 342
Hin1I GRCGYC 2 cut(s) 226, 272
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 2 cut(s) 315, 340
HinP1I GCGC 2 cut(s) 315, 340
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 293, 321
Hpy188III TCNNGA 2 cut(s) 170, 301
Hpy99I CGWCG 3 cut(s) 231, 250, 277
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 3 cut(s) 212, 258, 318
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 2 cut(s) 226, 272
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 2 cut(s) 315, 340
Kzo9I GATC 3 cut(s) 242, 297, 303
LmnI GCTCC 5 cut(s) 204, 212, 250, 258, 293
LpnPI CCDG 6 cut(s) 41, 183, 224, 270, 293, 320
MaeI CTAG 2 cut(s) 8, 352
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 244, 299, 305
MbiI CCGCTC 1 cut(s) 77
MboI GATC 3 cut(s) 242, 297, 303
MboII GAAGA 2 cut(s) 23, 185
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 209, 255
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 160
MnlI CCTC 3 cut(s) 94, 97, 177
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 3 cut(s) 242, 297, 303
NlaIII CATG 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 306
Ple19I CGATCG 1 cut(s) 300
Psp124BI GAGCTC 2 cut(s) 209, 255
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 303
PvuI CGATCG 1 cut(s) 300
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 2 cut(s) 209, 255
Sau3AI GATC 3 cut(s) 242, 297, 303
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 209, 255
SetI ASST 5 cut(s) 69, 209, 222, 255, 268
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 8, 352
SstI GAGCTC 2 cut(s) 209, 255
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 245, 275, 300
TasI AATT 1 cut(s) 148
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 3 cut(s) 217, 255, 263
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 148
XspI CTAG 2 cut(s) 8, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.