Rh5DG117600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0026414
Physical Location & Seq
Forward (+)
10606451 .. 10606708
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117600.1

Sequence Viewer

Length: 258 bp
ATGGGCCTAGAAGAAACCAAACTAGTCCAGCCCAACACTCCAAAGTCCAAACACAGCATTCAAAGCGTCTCACCCGCTCGTCGGAGTTGGGAGCCAGACAGTGAAACCCTAACCCCACAATCACAGTGGCCAAATCCTCCCGAAGACGCAAGAGAATCTGCCGAAAATGGACGGAGCTCCCTGAGAAAGCTACGGCGTCGATACTCTCAAGGCTTGGAGAGATCGAGAACCTGGAGAGCGCTCAGAAAGTGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.83

Weight (kDa)

10.53

Isoelectric Point (pI)

94.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026414)

Species Orthologous Gene IDs
rosa_samantha Rh5BG118600 Rh5DG117600 Rh7BG414100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 196
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 177, 190
AluI AGCT 2 cut(s) 177, 190
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 2 cut(s) 4, 128
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 63
BalI TGGCCA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 8, 23
BfoI RGCGCY 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 173, 256
BshFI GGCC 2 cut(s) 6, 130
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 6, 130
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 6, 130
BspCNI CTCAG 2 cut(s) 174, 255
BspLI GGNNCC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 77
BssMI GATC 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 101, 126
BstACI GRCGYC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 182, 242
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 6, 130
BtsIMutI CAGTG 2 cut(s) 106, 131
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 3 cut(s) 55, 155, 185
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviAII CATG 1 cut(s) 255
CviJI RGCY 7 cut(s) 6, 31, 94, 130, 177, 190, 213
CviKI_1 RGCY 7 cut(s) 6, 31, 94, 130, 177, 190, 213
DdeI CTNAG 2 cut(s) 182, 242
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco47III AGCGCT 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 258
FaiI YATR 1 cut(s) 256
FatI CATG 1 cut(s) 254
FauI CCCGC 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 179
FspBI CTAG 2 cut(s) 8, 23
GlaI GCGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 2 cut(s) 6, 130
HgaI GACGC 3 cut(s) 55, 155, 185
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 84, 245
Hpy188III TCNNGA 2 cut(s) 140, 225
Hpy99I CGWCG 2 cut(s) 84, 201
HpyCH4III ACNGT 2 cut(s) 101, 126
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 2 cut(s) 182, 242
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 91, 174, 182
LpnPI CCDG 5 cut(s) 41, 108, 194, 217, 244
MaeI CTAG 2 cut(s) 8, 23
MalI GATC 1 cut(s) 223
MbiI CCGCTC 1 cut(s) 77
MboI GATC 1 cut(s) 221
MboII GAAGA 2 cut(s) 23, 155
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 130
MluNI TGGCCA 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 130
MscI TGGCCA 1 cut(s) 130
Msp20I TGGCCA 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 1 cut(s) 221
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 93
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 179, 192, 233
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 22
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 8, 23
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 101, 126
TaqI TCGA 2 cut(s) 199, 224
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 2 cut(s) 106, 131
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 2 cut(s) 106, 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XspI CTAG 2 cut(s) 8, 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.