Rh7BG414100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0026414
Physical Location & Seq
Forward (+)
46648620 .. 46648811
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG414100.1

Sequence Viewer

Length: 192 bp
ATGGGCGACACCTCCTCCGCCTCAAAGAGACGACAGCGAGACTGGACGGAGCTCCCTGAGATCGCCACGGAGTCAATACTCTCGCGGCTGGGCGTCATTGACATCTTGGAGAGCGCTCAGAAGGTTTGCAGGAACTGGCGCAAAATCTATAAGAACAACTCGGATTTGGCGCACCGTCGACATGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

63

Amino Acids

7.4

Weight (kDa)

9.74

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026414)

Species Orthologous Gene IDs
rosa_samantha Rh5BG118600 Rh5DG117600 Rh7BG414100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 18, 85
AcyI GRCGYC 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 115
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 22, 33
AlwNI CAGNNNCTG 1 cut(s) 135
Aor51HI AGCGCT 1 cut(s) 115
AspLEI GCGC 3 cut(s) 116, 141, 172
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 22, 33
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 47, 140
BseDI CCNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 48, 131
BseNI ACTGG 2 cut(s) 47, 140
BseRI GAGGAG 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 22, 33
BsmBI CGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 2 cut(s) 18, 85
BspCNI CTCAG 2 cut(s) 49, 130
BspFNI CGCG 1 cut(s) 85
BsrI ACTGG 2 cut(s) 47, 140
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 57, 117
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 3 cut(s) 116, 141, 172
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 22, 33
BstMBI GATC 1 cut(s) 60
BstUI CGCG 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 135
CfoI GCGC 3 cut(s) 116, 141, 172
CseI GACGC 1 cut(s) 82
CviAII CATG 1 cut(s) 182
CviJI RGCY 2 cut(s) 52, 88
CviKI_1 RGCY 2 cut(s) 52, 88
DdeI CTNAG 2 cut(s) 57, 117
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 150, 183
FatI CATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 86
GlaI GCGC 3 cut(s) 115, 140, 171
GluI GCNGC 1 cut(s) 86
GsaI CCCAGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 117
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 116, 141, 172
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 3 cut(s) 114, 139, 170
HinP1I GCGC 3 cut(s) 114, 139, 170
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 120, 163
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 57, 117
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 3 cut(s) 114, 139, 170
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 49, 57
LpnPI CCDG 5 cut(s) 28, 69, 74, 115, 121
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 3 cut(s) 22, 25, 31
MvnI CGCG 1 cut(s) 85
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 185
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 177
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 14, 54, 126
SsiI CCGC 2 cut(s) 18, 85
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 178
TauI GCSGC 1 cut(s) 88
TspGWI ACGGA 2 cut(s) 62, 83
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.