Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0026420

Physical Location & Seq

Genomic Coordinates Forward (+)

18524038 .. 18533086

Gene Structure 9049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGAGATTTACATTCATCGATAACTTACAGGCTAGACACAGATGGGCAAGTACATGACTGGAATCTAGATGCTGTAATTGCAGAAGCAAATTTATGTGATGGCTATACAACTGATGGAGGGTGCCAGAGTTGGGACCAACCAAGCTGTAGGAATCCTAATGATAGATTTGAGCCAAAAACAGGGTTCTTCTACCCGTTAATCAGCAACATACTTGTTGCTAGACTGCGGAATAAGGACAAGAGAATTGTTGCAGGTGGACTGCGTCGTCGGAGAGAGGCTGGGCCAGAGATAGGAGTCGTCGCGGGGGAGCTGCTTGCGGAGGAGAATGGCGGACAAGGCCCTAGTCTCCTGTGCCGGCGAGAATTGGAGGAGGTGAGCGAGTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

4.83

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026420)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG174500 Rh5BG175300 Rh5CG192400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
AasI	GACNNNNNNGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	305
AciI	CCGC	4 cut(s)	229, 305, 320, 333
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	133, 182, 293
AluBI	AGCT	2 cut(s)	147, 313
AluI	AGCT	2 cut(s)	147, 313
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	2 cut(s)	284, 340
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	136, 284, 341
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	3 cut(s)	38, 95, 110
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	4 cut(s)	35, 68, 222, 345
BfmI	CTRYAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	136, 284, 341
BmiI	GGNNCC	2 cut(s)	125, 137
BmsI	GCATC	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 182, 293
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	133, 182, 293
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	338, 386
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	286, 342
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	133, 182, 293
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	286, 342
BspACI	CCGC	4 cut(s)	229, 305, 320, 333
BspANI	GGCC	2 cut(s)	286, 342
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	125, 137
BspMI	ACCTGC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	318, 359
BstFNI	CGCG	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 339
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	286, 342
BsuTUI	ATCGAT	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	318, 359
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	136, 284, 341
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	8 cut(s)	34, 105, 147, 175, 281, 286, 313, 342
CviKI_1	RGCY	8 cut(s)	34, 105, 147, 175, 281, 286, 313, 342
CviQI	GTAC	1 cut(s)	53
DrdI	GACNNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	341
FaeI	CATG	1 cut(s)	59
FaiI	YATR	4 cut(s)	57, 97, 108, 212
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	4 cut(s)	35, 68, 222, 345
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	286, 342
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	3 cut(s)	64, 154, 297
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	3 cut(s)	270, 273, 305
HpyCH4V	TGCA	2 cut(s)	83, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 339
Hsp92II	CATG	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	16, 46, 140, 168, 240, 267, 300, 365, 371
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	4 cut(s)	35, 68, 222, 345
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	4 cut(s)	78, 91, 246, 365
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	113, 271, 316, 364, 367
MroNI	GCCGGC	1 cut(s)	357
MseI	TTAA	1 cut(s)	200
MspI	CCGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	80, 339
NaeI	GCCGGC	1 cut(s)	359
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	125, 137
PaqCI	CACCTGC	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	64, 154
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	125, 137
PspPI	GGNCC	3 cut(s)	136, 284, 341
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	314
Sau96I	GGNCC	3 cut(s)	136, 284, 341
SchI	GAGTC	1 cut(s)	306
SetI	ASST	4 cut(s)	149, 259, 315, 378
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	4 cut(s)	78, 91, 246, 365
SsiI	CCGC	4 cut(s)	229, 305, 320, 333
SspMI	CTAG	4 cut(s)	35, 68, 222, 345
TaqI	TCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	78, 91, 246, 365
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	64, 154
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	6
Tth111I	GACNNNGTC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	67
XspI	CTAG	4 cut(s)	35, 68, 222, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.