Rh5CG192400

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0026420
Physical Location & Seq
Forward (+)
19172126 .. 19173456
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG192400.1

Sequence Viewer

Length: 432 bp
ATGGAGATTGCAGAGCAGCCTTTTACTGGAAATGACATGAACAACACATTGAAAATTACACATGAAAACGGTGATCCAGTGGAGCTCTACAATGCATCAGAAATCACCAGTAGTAGCGTTAATGAAGACTATTTCACTTGCACGCCAGTAGATCAAGGTGCTATACCAGAGTGGCTGCTAACCACAGTTGGGAGACCATATGACTTTGATGAATCATTTGATATTGCAAAAGCAGATTACTGTTATGGATATGACACAGACAGAGGGTGCCAGATTTGGGACCAGCCAACTCAGTGCATGCGTTTTGGTGATGTATTTGAGCAAGACAATGGTTACTTTTATCCAACAGATTCTAGTGGCTCTAATGCAACATCAACGAGTGATTCAAATACAAGCCTCAGCATTAGTGATTCTAATCGGACTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

4.05

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026420)

Species Orthologous Gene IDs
rosa_samantha Rh5BG174500 Rh5BG175300 Rh5CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AclWI GGATC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 26, 189, 277
AgsI TTSAA 2 cut(s) 52, 387
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 16, 175
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 83, 97, 320
AvaII GGWCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 28, 162
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 17, 176
BlsI GCNGC 2 cut(s) 18, 177
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 269, 281
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 189, 277
Bse1I ACTGG 5 cut(s) 31, 77, 108, 146, 427
Bse8I GATNNNNATC 1 cut(s) 414
BseGI GGATG 1 cut(s) 431
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 26, 189, 277
BseMII CTCAG 2 cut(s) 305, 412
BseNI ACTGG 5 cut(s) 31, 77, 108, 146, 427
BseXI GCAGC 2 cut(s) 28, 162
BshNI GGYRCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 3 cut(s) 26, 189, 277
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 73, 151
BspCNI CTCAG 2 cut(s) 304, 411
BspLI GGNNCC 2 cut(s) 269, 281
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 5 cut(s) 31, 77, 108, 146, 427
BssMI GATC 2 cut(s) 73, 151
Bst4CI ACNGT 3 cut(s) 71, 187, 242
BstC8I GCNNGC 2 cut(s) 143, 299
BstDEI CTNAG 2 cut(s) 291, 398
BstF5I GGATG 1 cut(s) 431
BstKTI GATC 2 cut(s) 76, 154
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 73, 151
BstNSI RCATGY 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 28, 162
BstV2I GAAGAC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 84, 299
Cac8I GCNNGC 2 cut(s) 143, 299
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 3 cut(s) 37, 62, 298
CviJI RGCY 6 cut(s) 19, 85, 175, 286, 360, 396
CviKI_1 RGCY 6 cut(s) 19, 85, 175, 286, 360, 396
DdeI CTNAG 2 cut(s) 291, 398
DpnI GATC 2 cut(s) 75, 153
DpnII GATC 2 cut(s) 73, 151
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 3 cut(s) 40, 65, 301
FaiI YATR 8 cut(s) 38, 63, 164, 199, 201, 246, 252, 299
FaqI GGGAC 1 cut(s) 293
FatI CATG 3 cut(s) 36, 61, 297
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 17, 176
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 17, 176
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 17, 176
Hin1II CATG 3 cut(s) 40, 65, 301
HinfI GANTC 4 cut(s) 212, 350, 383, 410
HphI GGTGA 3 cut(s) 83, 97, 320
Hpy188I TCNGA 2 cut(s) 100, 420
HpyCH4III ACNGT 3 cut(s) 71, 187, 242
HpyCH4V TGCA 6 cut(s) 11, 95, 141, 227, 297, 368
HpyF3I CTNAG 2 cut(s) 291, 398
Hsp92II CATG 3 cut(s) 40, 65, 301
Kzo9I GATC 2 cut(s) 73, 151
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 12, 90, 121, 159, 180, 284, 296, 408
Lsp1109I GCAGC 2 cut(s) 28, 162
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 75, 153
MboI GATC 2 cut(s) 73, 151
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 2 cut(s) 257, 407
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 120
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 73, 151
NlaIII CATG 3 cut(s) 40, 65, 301
NlaIV GGNNCC 2 cut(s) 269, 281
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 301
PaeI GCATGC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 212, 350, 383, 410
PkrI GCNGC 2 cut(s) 18, 177
Psp124BI GAGCTC 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 269, 281
PspPI GGNCC 1 cut(s) 280
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 17, 176
Sau3AI GATC 2 cut(s) 73, 151
Sau96I GGNCC 1 cut(s) 280
SduI GDGCHC 1 cut(s) 87
SetI ASST 2 cut(s) 87, 160
SfaNI GCATC 1 cut(s) 104
SinI GGWCC 1 cut(s) 280
SphI GCATGC 1 cut(s) 301
Sse9I AATT 1 cut(s) 54
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 3 cut(s) 71, 187, 242
TasI AATT 1 cut(s) 54
TfiI GAWTC 4 cut(s) 212, 350, 383, 410
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 84, 299
TseI GCWGC 2 cut(s) 16, 175
TspDTI ATGAA 4 cut(s) 53, 78, 138, 225
TspRI CASTG 2 cut(s) 84, 299
VpaK11BI GGWCC 1 cut(s) 280
XceI RCATGY 1 cut(s) 301
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.