Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020558

Physical Location & Seq

Genomic Coordinates Reverse (-)

33329459 .. 33332500

Gene Structure 3042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGTCTGAGTCTGCAACAAGCATGCATGATCCCAGAATTGGGCTTCTTAGCAAAGAGAAAAGCAAATGGCATTCTTCTATTTTCACTATCTACTGCTATAGAGTCTTCCTCTCCTTGCTCAAAATCAAAGATACCAAATTCCTGCCTGGCTCTCTCTCTTCTGTCAATACCATATCAGATTCAAACCTCGATGACTTCGCTGTTGACCAAACAGCTCTCACTCAGCTTGTGAAGAACACAAATCTCTACCAGCTGCAAGAGTTGGGAAGAGTTGAAGGAGTAATATCACTCCTCAAATCTGATGCAGTGCGTGGAATTCCTAGCGATGATGCTGAGGACATTCCCAAAAGAATCAGAGCATTTGGTTCCAACGTTTATCAAAAGGCCCCAGCAAGAAGGTTTTTCCATTTTGTGTGGGAAGCCTTCAAAGACCTAACAATTCTCATTCTATTAGGCTGTGCAGTGCTCTCTCTTGGTTTTGGCATCAAAAAGCATGGATTCCGACAAGGTTGGATTGATGGTGGGAGCATATTGCTTGCAGTCATTTTGGCCACTTCTGTGTCAGCAACTGGCCCTTACTTGCAGAGCAGACAACTGGTCCACAAGAATATCCAAATTGAGGCTGTGAGAGGTGGCAAGAAGCAAAAGATTTCTCTTTCTGAAGCTGTTGTTGGTGATGTAATTTTCTTGAACTGCGGAGATCAGGTGCCGGCTGATGGGTTACTTGTAGAAGGCTATTCACTGCAAGTAGACCAATCAAGCATGTCAGGACAAAGTGATGATATTGCTGAAATTAGCGATGACGAGAATCCATTCCTGTTTTCTGGGACAAAGATAACGCATGGGTCTGCTCGAATGCTTGTCATATCCGTCGGAATGAACACAAAACGGGGTGAAATGACTAGCCAAATCAGCCAAGACACTAGTGCAAAGACACTACTGCAAGCACGTCTGGAGAAGCTAACTTCGCTGATAGGTAAAGTCGCAACTGTGGTTGCTTTCCTTGTTCTTGCAGTGTTGTTAGTTCGATACTTCACAGGGCATACGGAGGATGAGAATGGAAACAAAGAGTTCAATTCCAGCAGCATTAAAGTTGATGACCTGATAAGTGCTGTAACTGGGATTATAGCGGCTGCCGTTTCAATTGTCGTGGTGGCAATTCCAGAAGGTCTGCCAATAGCACTAACTCTTACTGTTGCCTATTCTATGAAGAAAATGATGGCTGACAAAGCAACGGTTCTGAGGCTCTCTGCTGCTGAGACTATGGCATTTACCACCACAATCTGTACTGACAAAACGGGTACTCTCACAATGAACCAGATGACTGTGACAGAGTTTTGGATAGGTGACAATAGTTTGGAACAAGAAGCTTATTCATCAAAAATTTCTCATTTTGTTCTTAATTTGATCCAAGAAGGGGTTGCTTTGAATACAAGTGGTAGTGTGTACAAGCCTAGCCTGGATTCAGAAATTGAGATATCAGGCAGTCCAACTGAAAAGGCTATTCTATGGTGGGCAGTATATGGGTCACAGATGGATGCAGAGAAAGTAACGAGGAGTTGTAGCGTTCTGCAATTTGAGGCCTTCAACTCACAGAACAAGCGAAGTGGGGTTTTGCTAAAGAGGAAGGAAGACAGCACTATTCATGTACATTGGAAAGGAGCTGCAGAGATCATACTAGGAATGTGCTCTAGTTACTACAAACCCTTTGGACCCGTCAAACATATGAATGATAAAGAAAAAGGGAAATTTCAGCGGATTATTCAAGGCATGGCAGCTAGCAGACTCCGATGCATTGCATTTGCACATAAAGAAATTCCAGCAGATCAATATCGACTGGACCTAAAAAAAAAAATTATGCTACAAGAAGATGGATTTACCCTGTTGGGACTCATAGGTCTTAAAGATCCGTGCCGTCCTGGAGTGTGGAAAGCAGTTAAAGATTGTCAAAACGCCGGGGTGAACATCAAAATGATCACAGGGGACAATGTTTTCACTGCACAAGCCATTGCCACAGAATGTGGGATACTCAAGCCTGGTCAGGACATCTTCAGTGGAGCAGTGATAGAAGGTGCGGTTTTTCAAAGTTACTCTGACGAGGATAAAATGTTGAACGTGGACAATATCTGTGTAATGGCAAGGTCCTCTGCTCTTGATAAGCTTACAATGGTGCAATGCTTGAAGAAGAAACGGCATGTAGTTGCAGTGACCGGTGATGGCGCTAGTGATGCACCTGCATTAAAAGAAGCTGATATAGGACTATCTTTGGGAATTCAAGGGACACAAGTTGCCAAAGAAAGCTCAGATATTATAATCATCGATGATAACTTTGCGTCGGTGGTGAATGTTTTGGCATGTGGAAGATGTGTTTATCACAATACTCAGAAGCTCATTCAATTCCAGCTCACAGCAAATGTTACTGGTCTTGTAATCAACTCTGCAGCAGCAGCTTCATCAAGAGCAGTCCCATTTACAGTTGTTCGTTCAATTTGGTTGAACTTGATTATGGACACACTGCTAGCTCTGGCTCTTTCCAAGGATAAACCCACAAAAGAGCTCATGGAGAAGCCGCCGGTGGGCAGAACTAATCCCCTCATCACCAACATCATGTGGAGGAACCTCTCGGCTCAAGCTCTGTACCAGACGATAGTCCTTTTGGTATTACAATTCAAGGGCAAAGCAATCCCTGGTGTGGATGATAAGGTACTGGATACCTTGGTATTTAACACTTATCTTCTTTGCCAGGTGTTCAATGAGTTTAATGCAAGGAAGCTTGAGAAGAAGGATATCTTTAGGGGTTTACACACAGACAAATTGTTCATGGGGGTCATTACGGTGGCAATTGTTCTACAGGTGGTGACGCTGGAACTTTTGAGCAAATATTTGGATATAGGGAGGTTGAACTGCGGACAATGGGGACTATGTCTTGGAATTGCAGCCATGTCTTGGCCGATCGGATGGGTTGTTAAGTATATACCGGTGCCACAGAAACCCATTCTCCGCTACCTGCTCGAGTTGAAGTTGGAAAGCAAACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1013

Amino Acids

111.03

Weight (kDa)

8.51

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	88 - 157	7.7e-12	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	207 - 304	2.4e-17	P-type ATPase actuator domain
Cation_ATPase	PF13246	468 - 640	1.4e-24	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	622 - 751	2.3e-10	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	822 - 992	8.3e-38	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0038931
rosa_laevigata	RLG00000033881
rosa_multiflora	Rmu_sc0000533.1_g000080
rosa_rugosa	Rorug05G0175300
rosa_samantha	Rh5BG266800
rosa_wichuraiana	Rw5G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2312
AarI	CACCTGC	1 cut(s)	2242
AasI	GACNNNNNNGTC	1 cut(s)	1896
Acc36I	ACCTGC	2 cut(s)	2242, 3015
AccB1I	GGYRCC	2 cut(s)	706, 2980
AccB7I	CCANNNNNTGG	1 cut(s)	2946
AccI	GTMKAC	1 cut(s)	750
AciI	CCGC	7 cut(s)	696, 1130, 1756, 2075, 2570, 2907, 3001
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	3 cut(s)	23, 1402, 1901
AcoI	YGGCCR	2 cut(s)	549, 2948
AcsI	RAATTY	6 cut(s)	137, 315, 1383, 1748, 1815, 2271
AcuI	CTGAAG	2 cut(s)	681, 2035
AfaI	GTAC	6 cut(s)	1288, 1303, 1448, 1650, 2639, 2706
AfiI	CCNNNNNNNGG	8 cut(s)	38, 39, 619, 716, 1417, 2576, 2692, 2946
AgeI	ACCGGT	2 cut(s)	2210, 2977
AhdI	GACNNNNNGTC	1 cut(s)	596
AhlI	ACTAGT	1 cut(s)	923
AjiI	CACGTC	1 cut(s)	950
AjnI	CCWGG	6 cut(s)	145, 1458, 1918, 2035, 2686, 2742
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AleI	CACNNNNGTG	1 cut(s)	557
Alw21I	GWGCWC	3 cut(s)	468, 1691, 2559
Alw26I	GTCTC	1 cut(s)	1253
AlwI	GGATC	3 cut(s)	23, 1402, 1901
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	3011
AoxI	GGCC	5 cut(s)	384, 549, 571, 1581, 2948
ApoI	RAATTY	6 cut(s)	137, 315, 1383, 1748, 1815, 2271
AsiGI	ACCGGT	2 cut(s)	2210, 2977
Asp700I	GAANNNNTTC	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	2222
AspS9I	GGNCC	6 cut(s)	385, 572, 598, 1712, 1840, 2142
AsuC2I	CCSGG	1 cut(s)	1957
AsuHPI	GGTGA	8 cut(s)	686, 905, 1358, 1972, 2225, 2353, 2590, 2869
AsuNHI	GCTAGC	2 cut(s)	1778, 2518
AvaI	CYCGRG	1 cut(s)	3011
AvaII	GGWCC	4 cut(s)	598, 1712, 1840, 2142
BaeI	ACNNNNGTAYC	2 cut(s)	2703, 2736
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	706, 2980
BanII	GRGCYC	1 cut(s)	2559
BbsI	GAAGAC	2 cut(s)	97, 1638
Bbv12I	GWGCWC	3 cut(s)	468, 1691, 2559
BbvCI	CCTCAGC	1 cut(s)	333
BccI	CCATC	7 cut(s)	512, 710, 1213, 1528, 1865, 2210, 2952
BceAI	ACGGC	3 cut(s)	1121, 1899, 2207
BciT130I	CCWGG	6 cut(s)	147, 1460, 1920, 2037, 2688, 2744
BciVI	GTATCC	2 cut(s)	2019, 2704
BclI	TGATCA	1 cut(s)	1974
BcnI	CCSGG	1 cut(s)	1957
BcoDI	GTCTC	1 cut(s)	1253
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	9 cut(s)	321, 903, 924, 1455, 1679, 1692, 1779, 2223, 2519
BfmI	CTRYAG	4 cut(s)	97, 1665, 2439, 2849
BfoI	RGCGCY	1 cut(s)	2223
BfuAI	ACCTGC	2 cut(s)	2242, 3015
BfuI	GTATCC	2 cut(s)	2019, 2704
Bme1390I	CCNGG	7 cut(s)	147, 1460, 1920, 1957, 2037, 2688, 2744
Bme18I	GGWCC	4 cut(s)	598, 1712, 1840, 2142
BmeRI	GACNNNNNGTC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	3011
BmgBI	CACGTC	1 cut(s)	950
BmgT120I	GGNCC	6 cut(s)	385, 572, 598, 1712, 1840, 2142
BmiI	GGNNCC	6 cut(s)	367, 387, 708, 1714, 2618, 2982
BmrFI	CCNGG	7 cut(s)	147, 1460, 1920, 1957, 2037, 2688, 2744
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	6 cut(s)	292, 319, 492, 1528, 1781, 2218
BmtI	GCTAGC	2 cut(s)	1782, 2522
BmuI	ACTGGG	1 cut(s)	1128
BoxI	GACNNNNGTC	1 cut(s)	2648
BpiI	GAAGAC	2 cut(s)	97, 1638
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpmI	CTGGAG	2 cut(s)	974, 1941
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	3 cut(s)	2015, 2613, 2795
BpuMI	CCSGG	1 cut(s)	1957
Bsa29I	ATCGAT	1 cut(s)	2319
BsaBI	GATNNNNATC	1 cut(s)	1830
BsaJI	CCNNGG	4 cut(s)	1956, 2535, 2686, 2715
BsaWI	WCCGGW	2 cut(s)	2210, 2977
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 2982, 3012
Bsc4I	CCNNNNNNNGG	8 cut(s)	38, 39, 619, 716, 1417, 2576, 2692, 2946
Bse118I	RCCGGY	4 cut(s)	709, 2210, 2572, 2977
Bse1I	ACTGG	6 cut(s)	574, 600, 1123, 1842, 2425, 2712
Bse3DI	GCAATG	3 cut(s)	1794, 2007, 2180
Bse8I	GATNNNNATC	1 cut(s)	1830
BseBI	CCWGG	6 cut(s)	147, 1460, 1920, 2037, 2688, 2744
BseCI	ATCGAT	1 cut(s)	2319
BseDI	CCNNGG	4 cut(s)	1956, 2535, 2686, 2715
BseGI	GGATG	4 cut(s)	1057, 1543, 2701, 2963
BseJI	GATNNNNATC	1 cut(s)	1830
BseLI	CCNNNNNNNGG	8 cut(s)	38, 39, 619, 716, 1417, 2576, 2692, 2946
BseMI	GCAATG	3 cut(s)	1794, 2007, 2180
BseMII	CTCAG	6 cut(s)	236, 324, 1232, 1248, 2316, 2396
BseNI	ACTGG	6 cut(s)	574, 600, 1123, 1842, 2425, 2712
BseRI	GAGGAG	2 cut(s)	281, 1570
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	2 cut(s)	480, 1983
Bsh1285I	CGRYCG	1 cut(s)	2955
BshFI	GGCC	5 cut(s)	386, 551, 573, 1583, 2950
BshNI	GGYRCC	2 cut(s)	706, 2980
BshTI	ACCGGT	2 cut(s)	2210, 2977
BshVI	ATCGAT	1 cut(s)	2319
BsiEI	CGRYCG	1 cut(s)	2955
BsiHKAI	GWGCWC	3 cut(s)	468, 1691, 2559
BsiHKCI	CYCGRG	1 cut(s)	3011
BsiSI	CCGG	5 cut(s)	710, 1956, 2211, 2573, 2978
BslFI	GGGAC	6 cut(s)	841, 1902, 1997, 2293, 2450, 2931
BslI	CCNNNNNNNGG	8 cut(s)	38, 39, 619, 716, 1417, 2576, 2692, 2946
BsmAI	GTCTC	1 cut(s)	1253
BsmFI	GGGAC	6 cut(s)	841, 1902, 1997, 2293, 2450, 2931
BsmI	GAATGC	2 cut(s)	70, 861
BsnI	GGCC	5 cut(s)	386, 551, 573, 1583, 2950
BsoBI	CYCGRG	1 cut(s)	3011
Bsp1286I	GDGCHC	3 cut(s)	468, 1691, 2559
Bsp1407I	TGTACA	2 cut(s)	1446, 1648
Bsp143I	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
BspACI	CCGC	7 cut(s)	696, 1130, 1756, 2075, 2570, 2907, 3001
BspANI	GGCC	5 cut(s)	386, 551, 573, 1583, 2950
BspCNI	CTCAG	6 cut(s)	235, 325, 1233, 1249, 2315, 2395
BspDI	ATCGAT	1 cut(s)	2319
BspLI	GGNNCC	6 cut(s)	367, 387, 708, 1714, 2618, 2982
BspMAI	CTGCAG	2 cut(s)	1669, 2443
BspMI	ACCTGC	2 cut(s)	2242, 3015
BspOI	GCTAGC	2 cut(s)	1782, 2522
BspPI	GGATC	3 cut(s)	23, 1402, 1901
BspT107I	GGYRCC	2 cut(s)	706, 2980
BsrDI	GCAATG	3 cut(s)	1794, 2007, 2180
BsrFI	RCCGGY	4 cut(s)	709, 2210, 2572, 2977
BsrGI	TGTACA	2 cut(s)	1446, 1648
BsrI	ACTGG	6 cut(s)	574, 600, 1123, 1842, 2425, 2712
BssAI	RCCGGY	4 cut(s)	709, 2210, 2572, 2977
BssECI	CCNNGG	4 cut(s)	1956, 2535, 2686, 2715
BssMI	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
BssT1I	CCWWGG	2 cut(s)	2535, 2715
Bst2UI	CCWGG	6 cut(s)	147, 1460, 1920, 2037, 2688, 2744
Bst4CI	ACNGT	6 cut(s)	991, 1195, 1237, 1327, 2476, 2836
Bst6I	CTCTTC	2 cut(s)	163, 262
BstAUI	TGTACA	2 cut(s)	1446, 1648
BstC8I	GCNNGC	6 cut(s)	23, 537, 711, 945, 1780, 2520
BstDEI	CTNAG	8 cut(s)	6, 47, 222, 333, 1241, 1257, 2302, 2382
BstF5I	GGATG	4 cut(s)	1057, 1543, 2701, 2963
BstH2I	RGCGCY	1 cut(s)	2223
BstHHI	GCGC	1 cut(s)	2222
BstKTI	GATC	8 cut(s)	31, 703, 1410, 1674, 1828, 1909, 1977, 2955
BstMAI	GTCTC	1 cut(s)	1253
BstMBI	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
BstMCI	CGRYCG	1 cut(s)	2955
BstMWI	GCNNNNNNNGC	5 cut(s)	912, 967, 1229, 2228, 2447
BstNI	CCWGG	6 cut(s)	147, 1460, 1920, 2037, 2688, 2744
BstNSI	RCATGY	4 cut(s)	25, 766, 2198, 2358
BstPAI	GACNNNNGTC	1 cut(s)	2648
BstSCI	CCNGG	7 cut(s)	145, 1458, 1918, 1955, 2035, 2686, 2742
BstSFI	CTRYAG	4 cut(s)	97, 1665, 2439, 2849
BstV2I	GAAGAC	2 cut(s)	97, 1638
BstX2I	RGATCY	1 cut(s)	1906
BstYI	RGATCY	1 cut(s)	1906
Bsu15I	ATCGAT	1 cut(s)	2319
BsuI	GTATCC	2 cut(s)	2019, 2704
BsuRI	GGCC	5 cut(s)	386, 551, 573, 1583, 2950
BsuTUI	ATCGAT	1 cut(s)	2319
BtgZI	GCGATG	2 cut(s)	339, 813
BtrI	CACGTC	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	1057, 1543, 2701, 2963
BtsI	GCAGTG	8 cut(s)	312, 468, 740, 1020, 1995, 2067, 2211, 2513
BtsIMutI	CAGTG	9 cut(s)	312, 468, 740, 1020, 1995, 2059, 2067, 2211, 2513
BveI	ACCTGC	2 cut(s)	2242, 3015
Cac8I	GCNNGC	6 cut(s)	23, 537, 711, 945, 1780, 2520
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	2222
Cfr10I	RCCGGY	4 cut(s)	709, 2210, 2572, 2977
Cfr13I	GGNCC	6 cut(s)	385, 572, 598, 1712, 1840, 2142
ClaI	ATCGAT	1 cut(s)	2319
CseI	GACGC	2 cut(s)	2322, 2869
Csp6I	GTAC	6 cut(s)	1287, 1302, 1447, 1649, 2638, 2705
CspAI	ACCGGT	2 cut(s)	2210, 2977
CspCI	CAANNNNNGTGG	4 cut(s)	1131, 1166, 1588, 1623
CviQI	GTAC	6 cut(s)	1287, 1302, 1447, 1649, 2638, 2705
DdeI	CTNAG	8 cut(s)	6, 47, 222, 333, 1241, 1257, 2302, 2382
DpnI	GATC	8 cut(s)	30, 702, 1409, 1673, 1827, 1908, 1976, 2954
DpnII	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
DrdI	GACNNNNNNGTC	1 cut(s)	1896
DriI	GACNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	1896
EaeI	YGGCCR	2 cut(s)	549, 2948
Eam1104I	CTCTTC	2 cut(s)	163, 262
Eam1105I	GACNNNNNGTC	1 cut(s)	596
EarI	CTCTTC	2 cut(s)	163, 262
Ecl136II	GAGCTC	1 cut(s)	2557
Eco130I	CCWWGG	2 cut(s)	2535, 2715
Eco147I	AGGCCT	1 cut(s)	1583
Eco24I	GRGCYC	1 cut(s)	2559
Eco32I	GATATC	2 cut(s)	1479, 2788
Eco47I	GGWCC	4 cut(s)	598, 1712, 1840, 2142
Eco53kI	GAGCTC	1 cut(s)	2557
Eco57I	CTGAAG	2 cut(s)	681, 2035
Eco88I	CYCGRG	1 cut(s)	3011
EcoICRI	GAGCTC	1 cut(s)	2557
EcoO109I	RGGNCCY	2 cut(s)	385, 2142
EcoRI	GAATTC	2 cut(s)	315, 2271
EcoRII	CCWGG	6 cut(s)	145, 1458, 1918, 2035, 2686, 2742
EcoRV	GATATC	2 cut(s)	1479, 2788
EcoT14I	CCWWGG	2 cut(s)	2535, 2715
EcoT22I	ATGCAT	2 cut(s)	27, 1796
EcoT38I	GRGCYC	1 cut(s)	2559
ErhI	CCWWGG	2 cut(s)	2535, 2715
FalI	AAGNNNNNCTT	2 cut(s)	2774, 2806
FaqI	GGGAC	6 cut(s)	841, 1902, 1997, 2293, 2450, 2931
FauNDI	CATATG	1 cut(s)	1725
FbaI	TGATCA	1 cut(s)	1974
FblI	GTMKAC	1 cut(s)	750
FokI	GGATG	4 cut(s)	1064, 1550, 2708, 2970
FriOI	GRGCYC	1 cut(s)	2559
FspBI	CTAG	9 cut(s)	321, 903, 924, 1455, 1679, 1692, 1779, 2223, 2519
GlaI	GCGC	1 cut(s)	2221
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	2 cut(s)	974, 1941
HaeII	RGCGCY	1 cut(s)	2223
HaeIII	GGCC	5 cut(s)	386, 551, 573, 1583, 2950
HapII	CCGG	5 cut(s)	710, 1956, 2211, 2573, 2978
HgaI	GACGC	2 cut(s)	2322, 2869
HhaI	GCGC	1 cut(s)	2222
Hin6I	GCGC	1 cut(s)	2220
HinP1I	GCGC	1 cut(s)	2220
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	3 cut(s)	1368, 2159, 2771
HinfI	GANTC	9 cut(s)	8, 102, 179, 351, 498, 808, 1463, 1785, 1890
HpaII	CCGG	5 cut(s)	710, 1956, 2211, 2573, 2978
HphI	GGTGA	8 cut(s)	686, 905, 1358, 1972, 2225, 2353, 2590, 2869
Hpy166II	GTNNAC	7 cut(s)	205, 601, 751, 1447, 1963, 2119, 2801
Hpy188III	TCNNGA	7 cut(s)	688, 768, 953, 1163, 2042, 2153, 2457
Hpy8I	GTNNAC	7 cut(s)	205, 601, 751, 1447, 1963, 2119, 2801
Hpy99I	CGWCG	2 cut(s)	875, 2338
HpyCH4III	ACNGT	6 cut(s)	991, 1195, 1237, 1327, 2476, 2836
HpyCH4IV	ACGT	3 cut(s)	372, 949, 2115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	912, 967, 1229, 2228, 2447
HpyF3I	CTNAG	8 cut(s)	6, 47, 222, 333, 1241, 1257, 2302, 2382
HpySE526I	ACGT	3 cut(s)	372, 949, 2115
HspAI	GCGC	1 cut(s)	2220
KroI	GCCGGC	1 cut(s)	709
KroNI	GCCGGC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	1974
Kzo9I	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
LmnI	GCTCC	3 cut(s)	525, 1661, 2057
LweI	GCATC	6 cut(s)	292, 319, 492, 1528, 1781, 2218
MaeI	CTAG	9 cut(s)	321, 903, 924, 1455, 1679, 1692, 1779, 2223, 2519
MaeII	ACGT	3 cut(s)	372, 949, 2115
MalI	GATC	8 cut(s)	30, 702, 1409, 1673, 1827, 1908, 1976, 2954
MboI	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
MfeI	CAATTG	2 cut(s)	1143, 2841
MflI	RGATCY	1 cut(s)	1906
MhlI	GDGCHC	3 cut(s)	468, 1691, 2559
MlsI	TGGCCA	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	4 cut(s)	17, 111, 1779, 1884
MmeI	TCCRAC	6 cut(s)	393, 491, 526, 853, 1514, 3003
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	2 cut(s)	27, 1796
MroNI	GCCGGC	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	8 cut(s)	1089, 1401, 1902, 1938, 2240, 2724, 2760, 2967
MslI	CAYNNNNRTG	4 cut(s)	557, 1728, 1970, 2834
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	2 cut(s)	253, 1756
MspI	CCGG	5 cut(s)	710, 1956, 2211, 2573, 2978
MspR9I	CCNGG	7 cut(s)	147, 1460, 1920, 1957, 2037, 2688, 2744
MunI	CAATTG	2 cut(s)	1143, 2841
Mva1269I	GAATGC	2 cut(s)	70, 861
MvaI	CCWGG	6 cut(s)	147, 1460, 1920, 2037, 2688, 2744
MwoI	GCNNNNNNNGC	5 cut(s)	912, 967, 1229, 2228, 2447
NaeI	GCCGGC	1 cut(s)	711
NciI	CCSGG	1 cut(s)	1957
NdeI	CATATG	1 cut(s)	1725
NdeII	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
NgoMIV	GCCGGC	1 cut(s)	709
NheI	GCTAGC	2 cut(s)	1778, 2518
NlaIV	GGNNCC	6 cut(s)	367, 387, 708, 1714, 2618, 2982
NmeAIII	GCCGAG	1 cut(s)	2603
NmuCI	GTSAC	5 cut(s)	1327, 1346, 1527, 2206, 2857
NsiI	ATGCAT	2 cut(s)	27, 1796
NspI	RCATGY	4 cut(s)	25, 766, 2198, 2358
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	3011
PaqCI	CACCTGC	1 cut(s)	2242
PceI	AGGCCT	1 cut(s)	1583
PctI	GAATGC	2 cut(s)	70, 861
PdiI	GCCGGC	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	5 cut(s)	179, 351, 498, 808, 1463
PflFI	GACNNNGTC	1 cut(s)	2922
PflMI	CCANNNNNTGG	1 cut(s)	2946
PfoI	TCCNGGA	1 cut(s)	1918
PinAI	ACCGGT	2 cut(s)	2210, 2977
Ple19I	CGATCG	1 cut(s)	2955
PleI	GAGTC	4 cut(s)	16, 110, 1779, 1884
PpsI	GAGTC	4 cut(s)	16, 110, 1779, 1884
PpuMI	RGGWCCY	1 cut(s)	2142
PshAI	GACNNNNGTC	1 cut(s)	2648
PsiI	TTATAA	1 cut(s)	2312
Psp124BI	GAGCTC	1 cut(s)	2559
Psp1406I	AACGTT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	2142
Psp6I	CCWGG	6 cut(s)	145, 1458, 1918, 2035, 2686, 2742
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	6 cut(s)	145, 1458, 1918, 2035, 2686, 2742
PspN4I	GGNNCC	6 cut(s)	367, 387, 708, 1714, 2618, 2982
PspPI	GGNCC	6 cut(s)	385, 572, 598, 1712, 1840, 2142
PspPPI	RGGWCCY	1 cut(s)	2142
PspXI	VCTCGAGB	1 cut(s)	3011
PstI	CTGCAG	2 cut(s)	1669, 2443
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	1906
PsyI	GACNNNGTC	1 cut(s)	2922
PvuI	CGATCG	1 cut(s)	2955
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	6 cut(s)	1288, 1303, 1448, 1650, 2639, 2706
RsaNI	GTAC	6 cut(s)	1287, 1302, 1447, 1649, 2638, 2705
RseI	CAYNNNNRTG	4 cut(s)	557, 1728, 1970, 2834
SacI	GAGCTC	1 cut(s)	2559
SaqAI	TTAA	8 cut(s)	1089, 1401, 1902, 1938, 2240, 2724, 2760, 2967
Sau3AI	GATC	8 cut(s)	28, 700, 1407, 1671, 1825, 1906, 1974, 2952
Sau96I	GGNCC	6 cut(s)	385, 572, 598, 1712, 1840, 2142
SchI	GAGTC	4 cut(s)	17, 111, 1779, 1884
ScrFI	CCNGG	7 cut(s)	147, 1460, 1920, 1957, 2037, 2688, 2744
SduI	GDGCHC	3 cut(s)	468, 1691, 2559
SfaNI	GCATC	6 cut(s)	292, 319, 492, 1528, 1781, 2218
SfcI	CTRYAG	4 cut(s)	97, 1665, 2439, 2849
Sfr274I	CTCGAG	1 cut(s)	3011
SgrAI	CRCCGGYG	1 cut(s)	2572
SinI	GGWCC	4 cut(s)	598, 1712, 1840, 2142
SlaI	CTCGAG	1 cut(s)	3011
SmiMI	CAYNNNNRTG	4 cut(s)	557, 1728, 1970, 2834
SmlI	CTYRAG	4 cut(s)	2030, 2628, 2774, 3011
SmoI	CTYRAG	4 cut(s)	2030, 2628, 2774, 3011
SpeI	ACTAGT	1 cut(s)	923
SphI	GCATGC	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	1583
SsiI	CCGC	7 cut(s)	696, 1130, 1756, 2075, 2570, 2907, 3001
SspI	AATATT	1 cut(s)	2882
SspMI	CTAG	9 cut(s)	321, 903, 924, 1455, 1679, 1692, 1779, 2223, 2519
SstI	GAGCTC	1 cut(s)	2559
StuI	AGGCCT	1 cut(s)	1583
StyD4I	CCNGG	7 cut(s)	145, 1458, 1918, 1955, 2035, 2686, 2742
StyI	CCWWGG	2 cut(s)	2535, 2715
TaaI	ACNGT	6 cut(s)	991, 1195, 1237, 1327, 2476, 2836
TaiI	ACGT	3 cut(s)	375, 952, 2118
TaqI	TCGA	6 cut(s)	189, 853, 1027, 1834, 2319, 3012
TatI	WGTACW	3 cut(s)	1286, 1446, 1648
TauI	GCSGC	2 cut(s)	1133, 2572
TfiI	GAWTC	5 cut(s)	179, 351, 498, 808, 1463
Tru1I	TTAA	8 cut(s)	1089, 1401, 1902, 1938, 2240, 2724, 2760, 2967
Tru9I	TTAA	8 cut(s)	1089, 1401, 1902, 1938, 2240, 2724, 2760, 2967
TscAI	CASTG	9 cut(s)	312, 468, 747, 1020, 2002, 2059, 2067, 2211, 2520
TseFI	GTSAC	5 cut(s)	1327, 1346, 1527, 2206, 2857
Tsp45I	GTSAC	5 cut(s)	1327, 1346, 1527, 2206, 2857
TspDTI	ATGAA	8 cut(s)	893, 1223, 1328, 1365, 1634, 1742, 2442, 2809
TspGWI	ACGGA	3 cut(s)	859, 1061, 1899
TspRI	CASTG	9 cut(s)	312, 468, 747, 1020, 2002, 2059, 2067, 2211, 2520
Tth111I	GACNNNGTC	1 cut(s)	2922
Van91I	CCANNNNNTGG	1 cut(s)	2946
VpaK11BI	GGWCC	4 cut(s)	598, 1712, 1840, 2142
XapI	RAATTY	6 cut(s)	137, 315, 1383, 1748, 1815, 2271
XceI	RCATGY	4 cut(s)	25, 766, 2198, 2358
XhoI	CTCGAG	1 cut(s)	3011
XmiI	GTMKAC	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	9 cut(s)	321, 903, 924, 1455, 1679, 1692, 1779, 2223, 2519
Zsp2I	ATGCAT	2 cut(s)	27, 1796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.