Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0026433

Physical Location & Seq

Genomic Coordinates Forward (+)

67729710 .. 67733260

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG417800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGTTGCTTTTGCTGTAAAAAAAATTCAAAAAAAGAAGAAGAGAGGAACAATAAGAACAACAACACCCACATCAACGGTAGCAAATCAAATCGTCTAGATACTTCAAAGGTGAATTCAGAGGGGAATGTAAAAAGGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTAAAGGAGTTGAACATAAACGAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGCAAGCTAACTGCAGAACCACAGCTCTTCATTTGCGTAAGCTTTTTCCTAAAAACGAATTGGCAATGTATCTACCTCGTCTCGCCATGCAGGTAATGTGGAATATCATTGCTGGATGGAATGTGAAAACATGCATCATGGTGAGTTTTGAGGCGAGGAGGGAACCTGGAGGTTCTACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

20.85

Weight (kDa)

9.0

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026433)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG417800 Rh5CG442300 Rh5DG431900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	25, 115
AcuI	CTGAAG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	30, 108, 205
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	377, 395, 412
AluI	AGCT	3 cut(s)	377, 395, 412
Alw26I	GTCTC	2 cut(s)	169, 455
AoxI	GGCC	2 cut(s)	251, 349
ApoI	RAATTY	2 cut(s)	25, 115
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	124, 332, 523
BccI	CCATC	2 cut(s)	224, 480
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	169, 455
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	382
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	441, 477
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	2 cut(s)	235, 491
BseMI	GCAATG	2 cut(s)	441, 477
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	3 cut(s)	173, 230, 541
BshFI	GGCC	2 cut(s)	253, 351
BshVI	ATCGAT	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	169, 455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	253, 351
Bso31I	GGTCTC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	253, 351
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	534
BspMAI	CTGCAG	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	441, 477
BsrI	ACTGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	36, 402
BstC8I	GCNNGC	2 cut(s)	248, 375
BstDEI	CTNAG	3 cut(s)	168, 225, 355
BstF5I	GGATG	2 cut(s)	235, 491
BstMAI	GTCTC	2 cut(s)	169, 455
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	253, 351
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	235, 491
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	248, 375
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	189
CviAII	CATG	3 cut(s)	457, 501, 508
CviJI	RGCY	5 cut(s)	253, 351, 377, 395, 412
CviKI_1	RGCY	5 cut(s)	253, 351, 377, 395, 412
DdeI	CTNAG	3 cut(s)	168, 225, 355
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	36, 402
EarI	CTCTTC	2 cut(s)	36, 402
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	3 cut(s)	460, 504, 511
FaiI	YATR	5 cut(s)	209, 317, 458, 502, 509
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	3 cut(s)	456, 500, 507
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	2 cut(s)	242, 498
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	253, 351
Hin1II	CATG	3 cut(s)	460, 504, 511
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	3 cut(s)	124, 332, 523
Hpy166II	GTNNAC	2 cut(s)	175, 343
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	98, 305
Hpy8I	GTNNAC	2 cut(s)	175, 343
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	384, 460, 504
HpyF3I	CTNAG	3 cut(s)	168, 225, 355
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	460, 504, 511
LguI	GCTCTTC	1 cut(s)	402
LpnPI	CCDG	9 cut(s)	191, 232, 242, 318, 383, 446, 468, 522, 549
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	266
MboII	GAAGA	3 cut(s)	50, 53, 389
MluCI	AATT	4 cut(s)	25, 115, 140, 428
MmeI	TCCRAC	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	506
MslI	CAYNNNNRTG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
NlaIII	CATG	3 cut(s)	460, 504, 511
NlaIV	GGNNCC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	506
NspI	RCATGY	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	402
SatI	GCNGC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	25, 115, 140, 428
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	25, 115, 140, 428
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	389
XapI	RAATTY	2 cut(s)	25, 115
XbaI	TCTAGA	1 cut(s)	97
XceI	RCATGY	1 cut(s)	504
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.