Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0026433

Physical Location & Seq

Genomic Coordinates Forward (+)

69065850 .. 69069966

Gene Structure 4117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG431900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGTTGCTTTTGCTGTAAAAAAAATTCAAAAAAAGAAGAAGAGAGGAACAATAAGAACAACAACACCCACATCAACGGTAGCAAATCAAATCGTCTAGATACTTCAAAAGTGAATTCAGAGGGGAATGTAAAAAGGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTAAAGGAGTTGAACATAAACGAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGGTTGGTTGTGTTTATCTGAATGTAAATTCTTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.32

Weight (kDa)

8.24

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026433)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG417800 Rh5CG442300 Rh5DG431900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	25, 115, 397
AcuI	CTGAAG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	30, 108, 205
AjnI	CCWGG	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	2 cut(s)	251, 349
ApoI	RAATTY	3 cut(s)	25, 115, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	332
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	173, 230
BshFI	GGCC	2 cut(s)	253, 351
BshVI	ATCGAT	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	253, 351
Bso31I	GGTCTC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	253, 351
BspDI	ATCGAT	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	168, 225, 355
BstF5I	GGATG	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	253, 351
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	369
CviJI	RGCY	2 cut(s)	253, 351
CviKI_1	RGCY	2 cut(s)	253, 351
DdeI	CTNAG	3 cut(s)	168, 225, 355
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	369
FaiI	YATR	2 cut(s)	209, 317
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	253, 351
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	175, 343
Hpy188I	TCNGA	2 cut(s)	121, 390
Hpy188III	TCNNGA	2 cut(s)	98, 305
Hpy8I	GTNNAC	2 cut(s)	175, 343
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	168, 225, 355
HpySE526I	ACGT	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	191, 232, 242, 318, 356, 383
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	266
MboII	GAAGA	2 cut(s)	50, 53
MluCI	AATT	4 cut(s)	25, 115, 140, 397
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	8 cut(s)	39, 115, 151, 154, 208, 211, 265, 320
MseI	TTAA	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	6 cut(s)	165, 174, 222, 269, 322, 375
SexAI	ACCWGGT	1 cut(s)	369
SgeI	CNNG	9 cut(s)	110, 190, 226, 259, 269, 317, 358, 382, 383
Sse9I	AATT	4 cut(s)	25, 115, 140, 397
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	25, 115, 140, 397
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
XapI	RAATTY	3 cut(s)	25, 115, 397
XbaI	TCTAGA	1 cut(s)	97
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.