Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0026433

Physical Location & Seq

Genomic Coordinates Forward (+)

61436225 .. 61440345

Gene Structure 4121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG442300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGTTGCTTTTGCTGTAAAAAAAATTCAAAAAAAGAAGAAGAGAGGAACAATAAGAACAACAACACCCACATCAACGGTAGCAAATCAAATCGTCTAGATACTTCAAAGGTGAATTCAGAGGGGAATGTAAAAAGGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTAAAGGAGTTGAACATAAACGAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGGTTGTTGCTATCAAGCAGCTTGATCGCAATGGTTGCCAAGGGATCAGGGAATTTGTTGTTGAAGTATTGACGCTAGGTTTGGCAGATCACCAGAATCTTGTCAAATTGATTGGCTTTTGTGCTGAGGGGGATCAAAGGCTATTGGTTTATGAATATATGCCATTTGGATCTTTGGAAAACCATTTGCATGGTATGCAACTCACTTCACTTGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

196

Amino Acids

22.04

Weight (kDa)

6.24

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 187	1.7e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 188	6.2e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0026433)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG417800 Rh5CG442300 Rh5DG431900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	3 cut(s)	422, 510, 547
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	4 cut(s)	25, 115, 422, 585
AcuI	CTGAAG	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	30, 108, 205, 434, 584
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	3 cut(s)	422, 510, 547
AoxI	GGCC	2 cut(s)	251, 349
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	4 cut(s)	25, 115, 422, 585
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 433, 465
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	124, 332, 452
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	98, 446
BisI	GCNGC	2 cut(s)	251, 389
BlsI	GCNGC	2 cut(s)	252, 390
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	173, 230
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	2 cut(s)	253, 351
BshVI	ATCGAT	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	253, 351
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	394, 414, 457, 502, 539
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	253, 351
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	189
BspPI	GGATC	3 cut(s)	422, 510, 547
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	5 cut(s)	394, 414, 457, 502, 539
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	2 cut(s)	405, 565
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	168, 225, 355, 495
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	5 cut(s)	397, 417, 460, 505, 542
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	394, 414, 457, 502, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 565
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	539
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	539
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	253, 351
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	369
CviAII	CATG	1 cut(s)	560
CviJI	RGCY	5 cut(s)	253, 351, 391, 486, 511
CviKI_1	RGCY	5 cut(s)	253, 351, 391, 486, 511
DdeI	CTNAG	4 cut(s)	168, 225, 355, 495
DpnI	GATC	5 cut(s)	396, 416, 459, 504, 541
DpnII	GATC	5 cut(s)	394, 414, 457, 502, 539
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	563
FaiI	YATR	7 cut(s)	209, 317, 522, 528, 530, 561, 566
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	251, 389
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	251, 389
FspBI	CTAG	2 cut(s)	98, 446
GluI	GCNGC	2 cut(s)	251, 389
HaeIII	GGCC	2 cut(s)	253, 351
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	563
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	330, 466
HphI	GGTGA	3 cut(s)	124, 332, 452
Hpy166II	GTNNAC	2 cut(s)	175, 343
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	98, 305
Hpy8I	GTNNAC	2 cut(s)	175, 343
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	559, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 565
HpyF3I	CTNAG	4 cut(s)	168, 225, 355, 495
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	563
Kzo9I	GATC	5 cut(s)	394, 414, 457, 502, 539
LpnPI	CCDG	8 cut(s)	191, 232, 242, 318, 356, 383, 403, 476
Lsp1109I	GCAGC	1 cut(s)	400
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	2 cut(s)	98, 446
MaeII	ACGT	1 cut(s)	266
MalI	GATC	5 cut(s)	396, 416, 459, 504, 541
MboI	GATC	5 cut(s)	394, 414, 457, 502, 539
MboII	GAAGA	2 cut(s)	50, 53
MflI	RGATCY	1 cut(s)	539
MluCI	AATT	6 cut(s)	25, 115, 140, 422, 476, 585
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	9 cut(s)	39, 115, 151, 154, 208, 211, 265, 320, 490
MslI	CAYNNNNRTG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	405, 565
NdeII	GATC	5 cut(s)	394, 414, 457, 502, 539
NlaIII	CATG	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	330, 466
PkrI	GCNGC	2 cut(s)	252, 390
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	558
SatI	GCNGC	2 cut(s)	251, 389
Sau3AI	GATC	5 cut(s)	394, 414, 457, 502, 539
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	9 cut(s)	114, 165, 174, 222, 269, 322, 375, 393, 451
SexAI	ACCWGGT	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	6 cut(s)	25, 115, 140, 422, 476, 585
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	2 cut(s)	98, 446
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	25, 115, 140, 422, 476, 585
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	330, 466
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	537
XapI	RAATTY	4 cut(s)	25, 115, 422, 585
XbaI	TCTAGA	1 cut(s)	97
XspI	CTAG	2 cut(s)	98, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.