Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021312

Physical Location & Seq

Genomic Coordinates Forward (+)

17852686 .. 17883997

Gene Structure 31312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGTCATTTTCTTCAACATCCTTGGAGGAGAAGAAACCTGAAGAAGAAGCTCCTGTTGAGGACAAAGAGGAGGCTGAAGCTGAAAAGGAGCCTGGAGAAAACGAAGAGAAAGAGGATCTGCCGATGAAATATAGAGAACGCGTTCTTGGTTTGATACTTGTATCCCCATTATGCAAAGAACCGTCTTGGACTGAATGGTTTTATAATAAGGTGATATCAAATATGCTATATTTCTATGGCATGTGTGGTTTGTTAACGGAGTGTTTGCTTCAGCATTACTTCAGTAAGAAGGTTCGTGGTAGTGGTGAAGTTCCAAAGTCAGATATAGTTCAAGCATGCAGAAAAATTTGGGAAGGAACTAAAAAAAGAATAAAGGAGATGTTCAACAAGGTTGATCTCTCTGTTTCATCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCGGGAAGGAGCCTTTCTTCCCTGAATGCGTAAATTGGTTGTTAGATAATCAACTTCATGATGGCTCATGGGGTCCTCCTAATCTGCATCAGTTGTTAACAAAAGATGCCCTCTTATCCACGTTAGCCTGCATCCTTGCACTAAAGCGATGGAATATCGGTGAAGAACTAATTGACAGGGGTACATTCAATGATATTGCATATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

220

Amino Acids

25.3

Weight (kDa)

4.91

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	43 - 120	1.7e-20	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021312)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342811 RchiOBHm_Chr3g0451871 RchiOBHm_Chr5g0023631
rosa_samantha	Rh5CG181300 Rh5DG167700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccII	CGCG	1 cut(s)	144
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	348, 451
AcuI	CTGAAG	4 cut(s)	63, 99, 257, 268
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	18, 335, 388, 643
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	53, 83
AluI	AGCT	2 cut(s)	53, 83
AlwI	GGATC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	348, 451
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	439, 527
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	3 cut(s)	226, 320, 626
AvaII	GGWCC	2 cut(s)	439, 527
BccI	CCATC	2 cut(s)	509, 597
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	96, 457
Bme18I	GGWCC	2 cut(s)	439, 527
BmgT120I	GGNCC	2 cut(s)	439, 527
BmiI	GGNNCC	4 cut(s)	93, 441, 465, 528
BmrFI	CCNGG	2 cut(s)	96, 457
BmsI	GCATC	3 cut(s)	550, 550, 594
BpmI	CTGGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	20, 585
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	44, 86
Bsh1236I	CGCG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	118, 397
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	4 cut(s)	93, 441, 465, 528
BspPI	GGATC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	118, 397
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	340, 583
BstF5I	GGATG	2 cut(s)	20, 585
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	121, 400
BstMBI	GATC	2 cut(s)	118, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	2 cut(s)	247, 342
BstSCI	CCNGG	2 cut(s)	94, 455
BstUI	CGCG	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	20, 585
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	340, 583
CciI	TCATGA	1 cut(s)	511
Cfr13I	GGNCC	2 cut(s)	439, 527
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	4 cut(s)	244, 339, 512, 522
CviJI	RGCY	7 cut(s)	53, 77, 83, 94, 466, 519, 581
CviKI_1	RGCY	7 cut(s)	53, 77, 83, 94, 466, 519, 581
CviQI	GTAC	1 cut(s)	636
DpnI	GATC	2 cut(s)	120, 399
DpnII	GATC	2 cut(s)	118, 397
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	439, 527
Eco57I	CTGAAG	4 cut(s)	63, 99, 257, 268
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	247, 342, 515, 525
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	243, 338, 511, 521
FauNDI	CATATG	1 cut(s)	415
FokI	GGATG	2 cut(s)	7, 572
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	4 cut(s)	247, 342, 515, 525
HincII	GTYRAC	2 cut(s)	258, 552
HindII	GTYRAC	2 cut(s)	258, 552
HinfI	GANTC	1 cut(s)	5
HpaI	GTTAAC	2 cut(s)	258, 552
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	226, 320, 626
Hpy166II	GTNNAC	2 cut(s)	258, 552
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	258, 552
HpyAV	CCTTC	4 cut(s)	286, 350, 453, 454
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	6 cut(s)	177, 342, 541, 585, 593, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	4 cut(s)	247, 342, 515, 525
KspAI	GTTAAC	2 cut(s)	258, 552
Kzo9I	GATC	2 cut(s)	118, 397
LmnI	GCTCC	3 cut(s)	58, 91, 463
LpnPI	CCDG	8 cut(s)	54, 69, 81, 108, 469, 489, 595, 616
LweI	GCATC	3 cut(s)	550, 550, 594
MaeII	ACGT	1 cut(s)	575
MalI	GATC	2 cut(s)	120, 399
MboI	GATC	2 cut(s)	118, 397
MboII	GAAGA	7 cut(s)	6, 46, 56, 59, 119, 463, 629
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	4 cut(s)	348, 451, 487, 624
MluI	ACGCGT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	7 cut(s)	22, 55, 64, 67, 109, 540, 575
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	257, 551
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	96, 457
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	2 cut(s)	118, 397
NlaIII	CATG	4 cut(s)	247, 342, 515, 525
NlaIV	GGNNCC	4 cut(s)	93, 441, 465, 528
NspI	RCATGY	2 cut(s)	247, 342
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	511
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	455
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	4 cut(s)	93, 441, 465, 528
PspPI	GGNCC	2 cut(s)	439, 527
PspPPI	RGGWCCY	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	257, 551
Sau3AI	GATC	2 cut(s)	118, 397
Sau96I	GGNCC	2 cut(s)	439, 527
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	96, 457
SetI	ASST	7 cut(s)	43, 55, 85, 216, 297, 396, 578
SfaNI	GCATC	3 cut(s)	550, 550, 594
SinI	GGWCC	2 cut(s)	439, 527
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	348, 451, 487, 624
StyD4I	CCNGG	2 cut(s)	94, 455
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	578
TasI	AATT	4 cut(s)	348, 451, 487, 624
Tru1I	TTAA	2 cut(s)	257, 551
Tru9I	TTAA	2 cut(s)	257, 551
TscAI	CASTG	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	143, 399, 500
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	439, 527
XapI	RAATTY	2 cut(s)	348, 451
XceI	RCATGY	2 cut(s)	247, 342
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.