Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0021312

Physical Location & Seq

Genomic Coordinates Forward (+)

17736749 .. 17760207

Gene Structure 23459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCCTTGGAGGAGAAGAAACCTGAAGAAGAAGCTCCTGTTGAGGACAAAGAGGAGGCTGAAGCTGAAAAGGAGCCTGGAGAAAACGAAGAGAAAGAGGATCTGCCGATGAAATATAGAGAACGCGTTCTTGGTTTGATACTTGTATCCCCATTATGCAAAGAACCGTCTTGGACTGAATGGTTTTATAATAAGGTGATATCAAATATGCTATATTTCTATGGCATGTGTGGTTTGTTAACGGAGTGTTTGCTTCAGCATTACTTCAGTAAGAAGGTTCGTGGTAGTGGTGAAGTTCCAAAGTCAGATATAGTTCAAGCATGCAGAAAAATTTGGGAAGGAACTAAAAAAAGAATAAAGGAGATGTTCAACAAGGTTGATCTCTCTGTTTCATCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCCGGGAAGGAGCCTTTCTTCCCTGAATGCGTAAATTGGTTGTTAGATAATCAACTTCATGATGGCTCATGGGGTCCTCCTAATCTGCATCAGTTGTTAACAAAAGATGCCCTCTTATCCACGTTAGCCTGCATCCTTGCACTAAAGCGATGGAATATCGGTGAAGAACTAATTGACAGGGGTACATTCAATGATATTGCATATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

214

Amino Acids

24.67

Weight (kDa)

4.96

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	37 - 114	1.6e-20	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021312)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342811 RchiOBHm_Chr3g0451871 RchiOBHm_Chr5g0023631
rosa_samantha	Rh5CG181300 Rh5DG167700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccII	CGCG	1 cut(s)	126
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	330, 433
AcuI	CTGAAG	4 cut(s)	45, 81, 239, 250
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	317, 370, 625
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	35, 65
AluI	AGCT	2 cut(s)	35, 65
AlwI	GGATC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	330, 433
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	421, 509
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	208, 302, 608
AvaII	GGWCC	2 cut(s)	421, 509
BccI	CCATC	2 cut(s)	491, 579
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	78, 439
Bme18I	GGWCC	2 cut(s)	421, 509
BmgT120I	GGNCC	2 cut(s)	421, 509
BmiI	GGNNCC	4 cut(s)	75, 423, 447, 510
BmrFI	CCNGG	2 cut(s)	78, 439
BmsI	GCATC	3 cut(s)	532, 532, 576
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	423
BseRI	GAGGAG	2 cut(s)	26, 68
Bsh1236I	CGCG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	100, 379
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	4 cut(s)	75, 423, 447, 510
BspPI	GGATC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	100, 379
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	322, 565
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	103, 382
BstMBI	GATC	2 cut(s)	100, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	229, 324
BstSCI	CCNGG	2 cut(s)	76, 437
BstUI	CGCG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	322, 565
CciI	TCATGA	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	421, 509
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	4 cut(s)	226, 321, 494, 504
CviJI	RGCY	7 cut(s)	35, 59, 65, 76, 448, 501, 563
CviKI_1	RGCY	7 cut(s)	35, 59, 65, 76, 448, 501, 563
CviQI	GTAC	1 cut(s)	618
DpnI	GATC	2 cut(s)	102, 381
DpnII	GATC	2 cut(s)	100, 379
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	421, 509
Eco57I	CTGAAG	4 cut(s)	45, 81, 239, 250
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	229, 324, 497, 507
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	225, 320, 493, 503
FauNDI	CATATG	1 cut(s)	397
FokI	GGATG	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	4 cut(s)	229, 324, 497, 507
HincII	GTYRAC	2 cut(s)	240, 534
HindII	GTYRAC	2 cut(s)	240, 534
HpaI	GTTAAC	2 cut(s)	240, 534
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	3 cut(s)	208, 302, 608
Hpy166II	GTNNAC	2 cut(s)	240, 534
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	2 cut(s)	240, 534
HpyAV	CCTTC	4 cut(s)	268, 332, 435, 436
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	159, 324, 523, 567, 575, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	229, 324, 497, 507
KspAI	GTTAAC	2 cut(s)	240, 534
Kzo9I	GATC	2 cut(s)	100, 379
LmnI	GCTCC	3 cut(s)	40, 73, 445
LpnPI	CCDG	8 cut(s)	36, 51, 63, 90, 451, 471, 577, 598
LweI	GCATC	3 cut(s)	532, 532, 576
MaeII	ACGT	1 cut(s)	557
MalI	GATC	2 cut(s)	102, 381
MboI	GATC	2 cut(s)	100, 379
MboII	GAAGA	6 cut(s)	28, 38, 41, 101, 445, 611
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	4 cut(s)	330, 433, 469, 606
MluI	ACGCGT	1 cut(s)	124
MnlI	CCTC	7 cut(s)	4, 37, 46, 49, 91, 522, 557
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	239, 533
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	78, 439
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	439
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	2 cut(s)	100, 379
NlaIII	CATG	4 cut(s)	229, 324, 497, 507
NlaIV	GGNNCC	4 cut(s)	75, 423, 447, 510
NspI	RCATGY	2 cut(s)	229, 324
PaeI	GCATGC	1 cut(s)	324
PagI	TCATGA	1 cut(s)	493
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	75, 423, 447, 510
PspPI	GGNCC	2 cut(s)	421, 509
PspPPI	RGGWCCY	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	239, 533
Sau3AI	GATC	2 cut(s)	100, 379
Sau96I	GGNCC	2 cut(s)	421, 509
ScrFI	CCNGG	2 cut(s)	78, 439
SetI	ASST	7 cut(s)	25, 37, 67, 198, 279, 378, 560
SfaNI	GCATC	3 cut(s)	532, 532, 576
SinI	GGWCC	2 cut(s)	421, 509
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	4 cut(s)	330, 433, 469, 606
StyD4I	CCNGG	2 cut(s)	76, 437
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	560
TasI	AATT	4 cut(s)	330, 433, 469, 606
Tru1I	TTAA	2 cut(s)	239, 533
Tru9I	TTAA	2 cut(s)	239, 533
TscAI	CASTG	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	125, 381, 482
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	421, 509
XapI	RAATTY	2 cut(s)	330, 433
XceI	RCATGY	2 cut(s)	229, 324
XmnI	GAANNNNTTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.