Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0026632

Physical Location & Seq

Genomic Coordinates Forward (+)

19769489 .. 19781034

Gene Structure 11546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGTTGCATTATCTTCTGGACATCTAGTCATTAAAATTCTCAGTGTCCATATTCAGCTAGCAAATCTACAGAGCAAGATCAGATATAATATATTCATGTCAGGAAGCTCCGTCGTCTCATCATCAGTATGGGGGCTATTCTTGTTCATCTTTGGGCTGTGTGTTCTGGTAGAAGCTCAAGCTCCTTCTTCTCAACCTTCTCAAGCTCCTAGTTCTCAACCTCAAGCTACCACTGATCCATTTGAAGCGAGAGCTCTGAATTCAGTCTTTCAAAAATGGAAAATTGCACCCAAACAGAGGCAATGGAACATAAGCGGAGAACCATGCAGTGGAGCAGCCATAGACCCCTTCATCTTTGCCAGTAATGACTCCTACAACCCCTTAATCAAATGTGTCTGTTCCAACTTCACTTGCCACATTACTGAACTGAAAGTTTATGGCTTGGACGTTATTGGTGAACTCCCAGAAGAGCTTTGGAGTTTGACTTCCCTCACCAGCCTGAATTTGGCCCAGAATTACTTGACAGGACCTCTCTCTCCATCAATTGGAAATCTTACCGACATGCAATACTTGAGCCTTGGCATTAATTCATTATCAGGCGAGATACCGAAGGAACTCGGGAAGCTCACTGATTTAATATCATTGGCTTTTGGGACAAACAACTTTTCTGGTCCCCTGCCATCTGAGCTAGGGAATTTGACAAAATTAGAACAGATTTACATTGATAGTTCTGGAGCTGGTGGCCCAATTCCATCAACATTTGCTAATCTACAAAGCTTGAAGACAGTTTGGGCATCAGACAATGAATTCACTGGCAGGATACCAGACTTCATAGGAAATTGGTCAAGTCTTACAACCTTGTTGTTTCATGGTAATTCTTTTGAAGGTCCTATTCCATTGACACTTTCCAATCTGTCATCTCTAACAGAGCTGCGTATCAGTGATGTATCTAATGGTAATAGGAGCTCTTCTCTTGGATTTATAAAGAATATGAAGTCTCTGAATATCTTAGTGCTGAGGAATAACCATATTTCTGACGTAATTCCTTCCTACATTGGAGATTACCAACGTTTGTCTCAGCTGGATTTGAGCTTCAACGATATAAGTGGACGAATACCAGACTCGCTGTTTAATTTGAGTTTGCTCAGTATCCTGTTTCTCGGAAACAACAAGTTGAATGGTACCCTTCCTGAATCTAAAAAATCCTCTCTTCACACTGTAGACCTATCTTACAATAATCTGGTCGGGAGATTTCCTTCTTGGGTGAATGAAGAGTATTTACAGCTTAACTTAGTTGCCAACAACTTTAGCATCGAAACTTCAAACAGCAGGGTAAAACAAATTGAATACACACTTGGATTTTATTTCTTGGCCATGGCTGCTATTGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

464

Amino Acids

50.77

Weight (kDa)

5.33

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	143 - 287	3.9e-11	Leucine-rich repeat region
LRR_14	PF23598	302 - 390	2.5e-06	Leucine-rich repeat region
LRR_8	PF13855	333 - 392	1.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026632)

Species	Orthologous Gene IDs
rosa_samantha	Rh5CG198000 Rh5DG180400
rosa_wichuraiana	Rw5G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
Acc65I	GGTACC	1 cut(s)	1181
AccB1I	GGYRCC	1 cut(s)	1181
AccB7I	CCANNNNNTGG	2 cut(s)	329, 545
AccI	GTMKAC	1 cut(s)	1221
AciI	CCGC	1 cut(s)	315
AclI	AACGTT	1 cut(s)	1069
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	1371
AcsI	RAATTY	5 cut(s)	36, 259, 502, 694, 806
AfaI	GTAC	1 cut(s)	1183
AfiI	CCNNNNNNNGG	4 cut(s)	297, 329, 505, 545
AgsI	TTSAA	9 cut(s)	245, 272, 781, 884, 1096, 1177, 1323, 1346, 1388
AhdI	GACNNNNNGTC	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	1338, 1370
Alw21I	GWGCWC	2 cut(s)	256, 968
Alw26I	GTCTC	3 cut(s)	121, 1002, 1080
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	507, 742, 1371
ApeKI	GCWGC	3 cut(s)	335, 931, 1379
ApoI	RAATTY	5 cut(s)	36, 259, 502, 694, 806
AseI	ATTAAT	1 cut(s)	585
Asp718I	GGTACC	1 cut(s)	1181
AspS9I	GGNCC	5 cut(s)	508, 527, 671, 743, 887
AsuHPI	GGTGA	3 cut(s)	467, 484, 1276
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	3 cut(s)	527, 671, 887
BalI	TGGCCA	1 cut(s)	1373
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	2 cut(s)	256, 968
BarI	GAAGNNNNNNTAC	2 cut(s)	1263, 1295
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	256, 968
BbvCI	CCTCAGC	1 cut(s)	1016
BbvI	GCAGC	3 cut(s)	347, 918, 1366
BccI	CCATC	3 cut(s)	547, 688, 760
BciVI	GTATCC	2 cut(s)	813, 1160
BcoDI	GTCTC	3 cut(s)	121, 1002, 1080
BfaI	CTAG	4 cut(s)	26, 59, 210, 689
BfmI	CTRYAG	2 cut(s)	68, 1218
BfuI	GTATCC	2 cut(s)	813, 1160
BisI	GCNGC	3 cut(s)	336, 932, 1380
BlsI	GCNGC	3 cut(s)	337, 933, 1381
Bme18I	GGWCC	3 cut(s)	527, 671, 887
BmeRI	GACNNNNNGTC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	5 cut(s)	508, 527, 671, 743, 887
BmiI	GGNNCC	2 cut(s)	673, 1183
BmsI	GCATC	2 cut(s)	803, 1320
BmtI	GCTAGC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	955, 987
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	1016
BpuEI	CTTGAG	4 cut(s)	162, 186, 207, 592
BsaJI	CCNNGG	2 cut(s)	577, 1374
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 329, 505, 545
Bse1I	ACTGG	2 cut(s)	360, 817
Bse3DI	GCAATG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	577, 1374
BseLI	CCNNNNNNNGG	4 cut(s)	297, 329, 505, 545
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	5 cut(s)	55, 675, 1007, 1091, 1159
BseNI	ACTGG	2 cut(s)	360, 817
BseXI	GCAGC	3 cut(s)	347, 918, 1366
BshFI	GGCC	3 cut(s)	509, 744, 1373
BshNI	GGYRCC	1 cut(s)	1181
BsiHKAI	GWGCWC	2 cut(s)	256, 968
BsiHKCI	CYCGRG	1 cut(s)	617
BslFI	GGGAC	2 cut(s)	657, 667
BslI	CCNNNNNNNGG	4 cut(s)	297, 329, 505, 545
BsmAI	GTCTC	3 cut(s)	121, 1002, 1080
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	657, 667
BsnI	GGCC	3 cut(s)	509, 744, 1373
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	256, 968
Bsp143I	GATC	2 cut(s)	78, 235
Bsp19I	CCATGG	1 cut(s)	1374
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	3 cut(s)	509, 744, 1373
BspCNI	CTCAG	5 cut(s)	54, 676, 1008, 1090, 1158
BspLI	GGNNCC	2 cut(s)	673, 1183
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	230
BspQI	GCTCTTC	2 cut(s)	462, 973
BspT107I	GGYRCC	1 cut(s)	1181
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	360, 817
BssECI	CCNNGG	2 cut(s)	577, 1374
BssMI	GATC	2 cut(s)	78, 235
BssT1I	CCWWGG	2 cut(s)	577, 1374
Bst4CI	ACNGT	2 cut(s)	787, 1219
Bst6I	CTCTTC	4 cut(s)	462, 973, 1215, 1266
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	7 cut(s)	41, 684, 1009, 1016, 1077, 1145, 1291
BstDSI	CCRYGG	1 cut(s)	1374
BstKTI	GATC	2 cut(s)	81, 238
BstMAI	GTCTC	3 cut(s)	121, 1002, 1080
BstMBI	GATC	2 cut(s)	78, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	685, 1379
BstNSI	RCATGY	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	68, 1218
BstV1I	GCAGC	3 cut(s)	347, 918, 1366
BstV2I	GAAGAC	1 cut(s)	788
BsuI	GTATCC	2 cut(s)	813, 1160
BsuRI	GGCC	3 cut(s)	509, 744, 1373
BtgI	CCRYGG	1 cut(s)	1374
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	7 cut(s)	49, 231, 334, 627, 810, 946, 1215
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	5 cut(s)	508, 527, 671, 743, 887
Csp6I	GTAC	1 cut(s)	1182
CviAII	CATG	5 cut(s)	97, 324, 562, 869, 1375
CviQI	GTAC	1 cut(s)	1182
DdeI	CTNAG	7 cut(s)	41, 684, 1009, 1016, 1077, 1145, 1291
DpnI	GATC	2 cut(s)	80, 237
DpnII	GATC	2 cut(s)	78, 235
DriI	GACNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	1371
Eam1104I	CTCTTC	4 cut(s)	462, 973, 1215, 1266
Eam1105I	GACNNNNNGTC	1 cut(s)	26
EarI	CTCTTC	4 cut(s)	462, 973, 1215, 1266
Ecl136II	GAGCTC	2 cut(s)	254, 966
Eco130I	CCWWGG	2 cut(s)	577, 1374
Eco24I	GRGCYC	2 cut(s)	256, 968
Eco47I	GGWCC	3 cut(s)	527, 671, 887
Eco53kI	GAGCTC	2 cut(s)	254, 966
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	2 cut(s)	254, 966
EcoO109I	RGGNCCY	2 cut(s)	527, 887
EcoRI	GAATTC	2 cut(s)	259, 806
EcoT14I	CCWWGG	2 cut(s)	577, 1374
EcoT38I	GRGCYC	2 cut(s)	256, 968
ErhI	CCWWGG	2 cut(s)	577, 1374
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	5 cut(s)	100, 327, 565, 872, 1378
FaqI	GGGAC	2 cut(s)	657, 667
FatI	CATG	5 cut(s)	96, 323, 561, 868, 1374
FblI	GTMKAC	1 cut(s)	1221
Fnu4HI	GCNGC	3 cut(s)	336, 932, 1380
FriOI	GRGCYC	2 cut(s)	256, 968
Fsp4HI	GCNGC	3 cut(s)	336, 932, 1380
FspBI	CTAG	4 cut(s)	26, 59, 210, 689
GluI	GCNGC	3 cut(s)	336, 932, 1380
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	3 cut(s)	509, 744, 1373
Hin1II	CATG	5 cut(s)	100, 327, 565, 872, 1378
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	3 cut(s)	368, 1121, 1193
HphI	GGTGA	3 cut(s)	467, 484, 1276
Hpy166II	GTNNAC	3 cut(s)	458, 1109, 1222
Hpy188I	TCNGA	7 cut(s)	83, 258, 685, 799, 1002, 1036, 1163
Hpy188III	TCNNGA	6 cut(s)	18, 102, 619, 732, 1190, 1246
Hpy8I	GTNNAC	3 cut(s)	458, 1109, 1222
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	8 cut(s)	195, 207, 358, 604, 878, 1056, 1196, 1266
HpyCH4III	ACNGT	2 cut(s)	787, 1219
HpyCH4IV	ACGT	3 cut(s)	447, 1038, 1069
HpyCH4V	TGCA	4 cut(s)	8, 287, 327, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	685, 1379
HpyF3I	CTNAG	7 cut(s)	41, 684, 1009, 1016, 1077, 1145, 1291
HpySE526I	ACGT	3 cut(s)	447, 1038, 1069
Hsp92II	CATG	5 cut(s)	100, 327, 565, 872, 1378
KpnI	GGTACC	1 cut(s)	1185
Kzo9I	GATC	2 cut(s)	78, 235
LguI	GCTCTTC	2 cut(s)	462, 973
LmnI	GCTCC	6 cut(s)	113, 187, 211, 332, 734, 963
Lsp1109I	GCAGC	3 cut(s)	347, 918, 1366
LweI	GCATC	2 cut(s)	803, 1320
MaeI	CTAG	4 cut(s)	26, 59, 210, 689
MaeII	ACGT	3 cut(s)	447, 1038, 1069
MalI	GATC	2 cut(s)	80, 237
MboI	GATC	2 cut(s)	78, 235
MboII	GAAGA	7 cut(s)	6, 180, 479, 793, 960, 1202, 1283
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	2 cut(s)	256, 968
MlsI	TGGCCA	1 cut(s)	1373
MluNI	TGGCCA	1 cut(s)	1373
MlyI	GAGTC	2 cut(s)	362, 1115
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	231, 291, 500, 540, 1011, 1216
Mox20I	TGGCCA	1 cut(s)	1373
MscI	TGGCCA	1 cut(s)	1373
MseI	TTAA	6 cut(s)	33, 383, 585, 635, 1131, 1287
MslI	CAYNNNNRTG	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	1373
MspA1I	CMGCKG	1 cut(s)	1081
MunI	CAATTG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	685, 1379
NcoI	CCATGG	1 cut(s)	1374
NdeII	GATC	2 cut(s)	78, 235
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	100, 327, 565, 872, 1378
NlaIV	GGNNCC	2 cut(s)	673, 1183
NspI	RCATGY	1 cut(s)	565
PciSI	GCTCTTC	2 cut(s)	462, 973
PfeI	GAWTC	1 cut(s)	1193
PflMI	CCANNNNNTGG	2 cut(s)	329, 545
PkrI	GCNGC	3 cut(s)	337, 933, 1381
PleI	GAGTC	2 cut(s)	362, 1115
PpsI	GAGTC	2 cut(s)	362, 1115
PpuMI	RGGWCCY	2 cut(s)	527, 887
PshBI	ATTAAT	1 cut(s)	585
PsiI	TTATAA	1 cut(s)	983
Psp124BI	GAGCTC	2 cut(s)	256, 968
Psp1406I	AACGTT	1 cut(s)	1069
Psp5II	RGGWCCY	2 cut(s)	527, 887
PspN4I	GGNNCC	2 cut(s)	673, 1183
PspPI	GGNCC	5 cut(s)	508, 527, 671, 743, 887
PspPPI	RGGWCCY	2 cut(s)	527, 887
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	1 cut(s)	1183
RsaNI	GTAC	1 cut(s)	1182
RseI	CAYNNNNRTG	1 cut(s)	127
SacI	GAGCTC	2 cut(s)	256, 968
SapI	GCTCTTC	2 cut(s)	462, 973
SaqAI	TTAA	6 cut(s)	33, 383, 585, 635, 1131, 1287
SatI	GCNGC	3 cut(s)	336, 932, 1380
Sau3AI	GATC	2 cut(s)	78, 235
Sau96I	GGNCC	5 cut(s)	508, 527, 671, 743, 887
SchI	GAGTC	2 cut(s)	362, 1115
SduI	GDGCHC	2 cut(s)	256, 968
SfaNI	GCATC	2 cut(s)	803, 1320
SfcI	CTRYAG	2 cut(s)	68, 1218
SinI	GGWCC	3 cut(s)	527, 671, 887
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	4 cut(s)	177, 201, 222, 571
SmoI	CTYRAG	4 cut(s)	177, 201, 222, 571
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	4 cut(s)	26, 59, 210, 689
SstI	GAGCTC	2 cut(s)	256, 968
StyI	CCWWGG	2 cut(s)	577, 1374
TaaI	ACNGT	2 cut(s)	787, 1219
TaiI	ACGT	3 cut(s)	450, 1041, 1072
TaqI	TCGA	1 cut(s)	1314
TfiI	GAWTC	1 cut(s)	1193
Tru1I	TTAA	6 cut(s)	33, 383, 585, 635, 1131, 1287
Tru9I	TTAA	6 cut(s)	33, 383, 585, 635, 1131, 1287
TscAI	CASTG	7 cut(s)	49, 238, 334, 634, 817, 946, 1222
TseI	GCWGC	3 cut(s)	335, 931, 1379
TspDTI	ATGAA	9 cut(s)	85, 136, 340, 579, 819, 820, 857, 1007, 1284
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	7 cut(s)	49, 238, 334, 634, 817, 946, 1222
Van91I	CCANNNNNTGG	2 cut(s)	329, 545
VpaK11BI	GGWCC	3 cut(s)	527, 671, 887
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	5 cut(s)	36, 259, 502, 694, 806
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	2 cut(s)	471, 502
XmiI	GTMKAC	1 cut(s)	1221
XspI	CTAG	4 cut(s)	26, 59, 210, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.