Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0026632

Physical Location & Seq

Genomic Coordinates Forward (+)

20780535 .. 20789612

Gene Structure 9078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCAGGAAGCTCCGTGGTCTCATCATCAGTATGGGGGCTATTCTTGTTCATCTTTGGGCTGTGTGTTCTGGTAGAAGCTCAAGCTCCTTCTTCTCAACCTCAAGCTACCACTGATCCATTTGAAGCGAGAGCTCTGAATTCAGTCTTTCAAAAATGGAAAATTGCACCCAAACAGAGGCAATGGAACATAAGCGGAGAACCATGCAGTGGAGCAGCCATAGACCCCTTCATCTTTGCCAGTAATGACTCCTACAACCCCTTAATCAAATGTGTCTGTTCCAACTTCACTTGCCACATTACTGAACTGAAAGTTTATGCCTTGGACGTTATTGGTGAACTCCCAGAAGAGCTTTGGAGTTTGACTTCCCTCACCAGCCTGAATTTGGCCCAGAATTACTTGACAGGACCTCTCTCTCCATCAATTGGAAATCTTACCAACATGCAATACTTGAGCCTTGGCATTAATTCATTATCAGGCGAGATACCGAAGGAACTCGGGAAGCTCACTGATTTAATATCATTGGCTTTTGGGACAAACAACTTTTCTGGTCCCCTGCCATCTGAGCTAGGGAATTTGACAAAATTAGAACAGATTTACATTGATAGTTCTGGAGCTGGTGGCGCAATTCCATCAACATTTGCTAATCTACAAAGCTTGAAGACAGTTTGGGCATCAGACAATGAATTCACTGGCAGGATACCAGACTTCATAGGAAATTGGTCAAGTCTTACAACCTTGTTGTTTCATGGTAATTCTTTTGAAGGTCCTATTCCATTGACACTTTCCAATCTGTCATCTCTAACAGAGCTGCGTATCAGTGATGTATCTAATGGTAATAGGAGCTCTTCTCTTGGATTTATAAAGAATATGAAGTCTCTGAATATCTTAGTGCTGAGGAATAACCATATTTCTGACGTAATTCCTTCCTACATTGGAGATTACCAACGGTTGTCTCAGCTGGATTTGAGCTTCAACGATATAAGTGGACGAATACCAGACTCACTGTTTAATTTGAGTTTGCTCAGTATCCTGTTTCTCGGAAACAACAAGTTGAATGGTACCCTTCCTGAATCTAAACAATCCTCTCTTCACACTGTAGACCTGTCTTACAATAATCTAGTCGGGAGATTTCCTTCTTGGGTGAATGAAGAGTATTTACAGCTTAACTTAGTTGCCAACAAACGTAATAAAAAGATGATCTCCTTCTATTTATGGCAGCTATGTCCACCTCACCATGAGACTATATTTGTGATTGGTAATATGTCGAGTGTTTCAATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

428

Amino Acids

46.92

Weight (kDa)

5.43

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	111 - 247	1.6e-11	Leucine-rich repeat region
LRR_14	PF23598	185 - 273	6.1e-06	Leucine-rich repeat region
LRR_14	PF23598	262 - 351	2e-06	Leucine-rich repeat region
LRR_8	PF13855	293 - 352	1.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026632)

Species	Orthologous Gene IDs
rosa_samantha	Rh5CG198000 Rh5DG180400
rosa_wichuraiana	Rw5G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
Acc65I	GGTACC	1 cut(s)	1061
AccB1I	GGYRCC	1 cut(s)	1061
AccB7I	CCANNNNNTGG	2 cut(s)	209, 425
AccI	GTMKAC	1 cut(s)	1101
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	4 cut(s)	139, 382, 574, 686
AfaI	GTAC	1 cut(s)	1063
AfiI	CCNNNNNNNGG	4 cut(s)	177, 209, 385, 425
AgsI	TTSAA	7 cut(s)	125, 152, 661, 764, 976, 1057, 1278
Alw21I	GWGCWC	2 cut(s)	136, 848
Alw26I	GTCTC	4 cut(s)	25, 882, 960, 1235
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	3 cut(s)	215, 811, 1219
ApoI	RAATTY	4 cut(s)	139, 382, 574, 686
AseI	ATTAAT	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	1061
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	4 cut(s)	388, 407, 551, 767
AsuHPI	GGTGA	4 cut(s)	347, 364, 1156, 1226
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	407, 551, 767
BanI	GGYRCC	1 cut(s)	1061
BanII	GRGCYC	2 cut(s)	136, 848
BarI	GAAGNNNNNNTAC	2 cut(s)	1143, 1175
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	2 cut(s)	136, 848
BbvCI	CCTCAGC	1 cut(s)	896
BbvI	GCAGC	3 cut(s)	227, 798, 1231
BccI	CCATC	3 cut(s)	427, 568, 640
BciVI	GTATCC	2 cut(s)	693, 1040
BcoDI	GTCTC	4 cut(s)	25, 882, 960, 1235
BfaI	CTAG	2 cut(s)	569, 1121
BfmI	CTRYAG	1 cut(s)	1098
BfuI	GTATCC	2 cut(s)	693, 1040
BisI	GCNGC	3 cut(s)	216, 812, 1220
BlsI	GCNGC	3 cut(s)	217, 813, 1221
Bme18I	GGWCC	3 cut(s)	407, 551, 767
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	4 cut(s)	388, 407, 551, 767
BmiI	GGNNCC	2 cut(s)	553, 1063
BmsI	GCATC	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	835, 867
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	896
BpuEI	CTTGAG	3 cut(s)	66, 87, 472
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	15, 321, 457
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 209, 385, 425
Bse1I	ACTGG	2 cut(s)	240, 697
Bse3DI	GCAATG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	15, 321, 457
BseLI	CCNNNNNNNGG	4 cut(s)	177, 209, 385, 425
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	4 cut(s)	555, 887, 971, 1039
BseNI	ACTGG	2 cut(s)	240, 697
BseXI	GCAGC	3 cut(s)	227, 798, 1231
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	1061
BsiHKAI	GWGCWC	2 cut(s)	136, 848
BsiHKCI	CYCGRG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	537, 547
BslI	CCNNNNNNNGG	4 cut(s)	177, 209, 385, 425
BsmAI	GTCTC	4 cut(s)	25, 882, 960, 1235
BsmFI	GGGAC	2 cut(s)	537, 547
BsnI	GGCC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	136, 848
Bsp143I	GATC	2 cut(s)	115, 1200
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	4 cut(s)	556, 888, 970, 1038
BspLI	GGNNCC	2 cut(s)	553, 1063
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	2 cut(s)	342, 853
BspT107I	GGYRCC	1 cut(s)	1061
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	240, 697
BssECI	CCNNGG	3 cut(s)	15, 321, 457
BssMI	GATC	2 cut(s)	115, 1200
BssT1I	CCWWGG	2 cut(s)	321, 457
Bst4CI	ACNGT	4 cut(s)	667, 951, 1008, 1099
Bst6I	CTCTTC	4 cut(s)	342, 853, 1095, 1146
BstDEI	CTNAG	6 cut(s)	564, 889, 896, 957, 1025, 1171
BstDSI	CCRYGG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	2 cut(s)	118, 1203
BstMAI	GTCTC	4 cut(s)	25, 882, 960, 1235
BstMBI	GATC	2 cut(s)	115, 1200
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 623
BstNSI	RCATGY	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	1098
BstV1I	GCAGC	3 cut(s)	227, 798, 1231
BstV2I	GAAGAC	1 cut(s)	668
BsuI	GTATCC	2 cut(s)	693, 1040
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	7 cut(s)	111, 214, 507, 690, 826, 1004, 1095
CfoI	GCGC	1 cut(s)	626
Cfr13I	GGNCC	4 cut(s)	388, 407, 551, 767
Csp6I	GTAC	1 cut(s)	1062
CviAII	CATG	4 cut(s)	204, 442, 749, 1238
CviQI	GTAC	1 cut(s)	1062
DdeI	CTNAG	6 cut(s)	564, 889, 896, 957, 1025, 1171
DpnI	GATC	2 cut(s)	117, 1202
DpnII	GATC	2 cut(s)	115, 1200
Eam1104I	CTCTTC	4 cut(s)	342, 853, 1095, 1146
EarI	CTCTTC	4 cut(s)	342, 853, 1095, 1146
Ecl136II	GAGCTC	2 cut(s)	134, 846
Eco130I	CCWWGG	2 cut(s)	321, 457
Eco24I	GRGCYC	2 cut(s)	136, 848
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	407, 551, 767
Eco53kI	GAGCTC	2 cut(s)	134, 846
Eco88I	CYCGRG	1 cut(s)	497
EcoICRI	GAGCTC	2 cut(s)	134, 846
EcoO109I	RGGNCCY	2 cut(s)	407, 767
EcoRI	GAATTC	2 cut(s)	139, 686
EcoT14I	CCWWGG	2 cut(s)	321, 457
EcoT38I	GRGCYC	2 cut(s)	136, 848
ErhI	CCWWGG	2 cut(s)	321, 457
FaeI	CATG	4 cut(s)	207, 445, 752, 1241
FaqI	GGGAC	2 cut(s)	537, 547
FatI	CATG	4 cut(s)	203, 441, 748, 1237
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	3 cut(s)	216, 812, 1220
FriOI	GRGCYC	2 cut(s)	136, 848
Fsp4HI	GCNGC	3 cut(s)	216, 812, 1220
FspBI	CTAG	2 cut(s)	569, 1121
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	3 cut(s)	216, 812, 1220
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	207, 445, 752, 1241
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	3 cut(s)	248, 1001, 1073
HphI	GGTGA	4 cut(s)	347, 364, 1156, 1226
Hpy166II	GTNNAC	4 cut(s)	338, 989, 1102, 1229
Hpy188I	TCNGA	6 cut(s)	138, 565, 679, 882, 916, 1043
Hpy188III	TCNNGA	5 cut(s)	6, 499, 612, 1070, 1126
Hpy8I	GTNNAC	4 cut(s)	338, 989, 1102, 1229
HpyAV	CCTTC	8 cut(s)	99, 238, 484, 758, 936, 1076, 1146, 1216
HpyCH4III	ACNGT	4 cut(s)	667, 951, 1008, 1099
HpyCH4IV	ACGT	3 cut(s)	327, 918, 1186
HpyCH4V	TGCA	3 cut(s)	167, 207, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 623
HpyF3I	CTNAG	6 cut(s)	564, 889, 896, 957, 1025, 1171
HpySE526I	ACGT	3 cut(s)	327, 918, 1186
Hsp92II	CATG	4 cut(s)	207, 445, 752, 1241
HspAI	GCGC	1 cut(s)	624
KpnI	GGTACC	1 cut(s)	1065
Kzo9I	GATC	2 cut(s)	115, 1200
LguI	GCTCTTC	2 cut(s)	342, 853
LmnI	GCTCC	5 cut(s)	17, 91, 212, 614, 843
Lsp1109I	GCAGC	3 cut(s)	227, 798, 1231
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	2 cut(s)	569, 1121
MaeII	ACGT	3 cut(s)	327, 918, 1186
MalI	GATC	2 cut(s)	117, 1202
MboI	GATC	2 cut(s)	115, 1200
MboII	GAAGA	6 cut(s)	84, 359, 673, 840, 1082, 1163
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	136, 848
MlyI	GAGTC	2 cut(s)	242, 995
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	7 cut(s)	111, 171, 380, 420, 891, 1096, 1242
MseI	TTAA	6 cut(s)	263, 465, 515, 1011, 1167, 1285
MslI	CAYNNNNRTG	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	961
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	565, 623
NdeII	GATC	2 cut(s)	115, 1200
NlaIII	CATG	4 cut(s)	207, 445, 752, 1241
NlaIV	GGNNCC	2 cut(s)	553, 1063
NspI	RCATGY	1 cut(s)	445
PciSI	GCTCTTC	2 cut(s)	342, 853
PfeI	GAWTC	1 cut(s)	1073
PflMI	CCANNNNNTGG	2 cut(s)	209, 425
PkrI	GCNGC	3 cut(s)	217, 813, 1221
PleI	GAGTC	2 cut(s)	242, 995
PpsI	GAGTC	2 cut(s)	242, 995
PpuMI	RGGWCCY	2 cut(s)	407, 767
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	863
Psp124BI	GAGCTC	2 cut(s)	136, 848
Psp5II	RGGWCCY	2 cut(s)	407, 767
PspN4I	GGNNCC	2 cut(s)	553, 1063
PspPI	GGNCC	4 cut(s)	388, 407, 551, 767
PspPPI	RGGWCCY	2 cut(s)	407, 767
PvuII	CAGCTG	1 cut(s)	961
RsaI	GTAC	1 cut(s)	1063
RsaNI	GTAC	1 cut(s)	1062
RseI	CAYNNNNRTG	1 cut(s)	31
SacI	GAGCTC	2 cut(s)	136, 848
SapI	GCTCTTC	2 cut(s)	342, 853
SaqAI	TTAA	6 cut(s)	263, 465, 515, 1011, 1167, 1285
SatI	GCNGC	3 cut(s)	216, 812, 1220
Sau3AI	GATC	2 cut(s)	115, 1200
Sau96I	GGNCC	4 cut(s)	388, 407, 551, 767
SchI	GAGTC	2 cut(s)	242, 995
SduI	GDGCHC	2 cut(s)	136, 848
SfaNI	GCATC	1 cut(s)	683
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	3 cut(s)	407, 551, 767
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	3 cut(s)	81, 102, 451
SmoI	CTYRAG	3 cut(s)	81, 102, 451
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	569, 1121
SstI	GAGCTC	2 cut(s)	136, 848
StyI	CCWWGG	2 cut(s)	321, 457
TaaI	ACNGT	4 cut(s)	667, 951, 1008, 1099
TaiI	ACGT	3 cut(s)	330, 921, 1189
TaqI	TCGA	1 cut(s)	1268
TfiI	GAWTC	1 cut(s)	1073
Tru1I	TTAA	6 cut(s)	263, 465, 515, 1011, 1167, 1285
Tru9I	TTAA	6 cut(s)	263, 465, 515, 1011, 1167, 1285
TscAI	CASTG	7 cut(s)	118, 214, 514, 697, 826, 1011, 1102
TseI	GCWGC	3 cut(s)	215, 811, 1219
TspDTI	ATGAA	8 cut(s)	40, 220, 459, 699, 700, 737, 887, 1164
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	7 cut(s)	118, 214, 514, 697, 826, 1011, 1102
Van91I	CCANNNNNTGG	2 cut(s)	209, 425
VpaK11BI	GGWCC	3 cut(s)	407, 551, 767
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	4 cut(s)	139, 382, 574, 686
XceI	RCATGY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	2 cut(s)	351, 382
XmiI	GTMKAC	1 cut(s)	1101
XspI	CTAG	2 cut(s)	569, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.