Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0023380

Physical Location & Seq

Genomic Coordinates Reverse (-)

66213417 .. 66218826

Gene Structure 5410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG473800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGCCAATATTGGAATCTTAACCTCCGTGGCTGCAAAGTATTAGAAGAAATCCCCGATTGCATTAGTAGCTTAACGTCGTTGAATCTGAGTGGAAGTATGATTAAGAGTATACCTTCAACTATCAAACAAGCGTCTAGGCTGAGATGTAAATCCGATTTCAAAACCATCAACGGAGAAAGCCATCAGTTCAACAACTATTTTCCCTATGATTGTAATCTCACCCGTTGGGGTGACGTCAATTCAGATCACGTCTTAGTGTGGTATTATGGCCTTGAAAGTGCGCAGCAGTTCACTATTTTTAACAATGCCACCGAAGCCTCTTTTGAATTCTATGCACTTAATAAAAGGAAATTTCAGCATGAAGGATTGGAGTTTTCGGGTGTAGAGACTGCTCTGCTGTTGTATGTCCGGGATATGATTCGGCTTATTGAAGGAGGTTCAAGATGCTGTGAAATGCCAAGTCCTCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

5.91

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023380)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG435400 Rh5CG473800 Rh5DG466400 Rh7DG447200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
Acc16I	TGCGCA	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	329, 353
AcyI	GRCGYC	1 cut(s)	237
AgsI	TTSAA	8 cut(s)	85, 120, 163, 193, 278, 329, 434, 444
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	33, 286
ApoI	RAATTY	2 cut(s)	329, 353
AspLEI	GCGC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	214, 245
BbvI	GCAGC	2 cut(s)	20, 298
BccI	CCATC	2 cut(s)	176, 192
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	34, 287
BlsI	GCNGC	2 cut(s)	35, 288
Bme1390I	CCNGG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	413
BsaBI	GATNNNNATC	2 cut(s)	151, 216
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	28
Bse8I	GATNNNNATC	2 cut(s)	151, 216
BseDI	CCNNGG	1 cut(s)	28
BseJI	GATNNNNATC	2 cut(s)	151, 216
BseMII	CTCAG	2 cut(s)	80, 134
BseXI	GCAGC	2 cut(s)	20, 298
BshFI	GGCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	81, 135
BspHI	TCATGA	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	247
BssNAI	GTATAC	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	89, 143, 256
BstDSI	CCRYGG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 317
BstSCI	CCNGG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	20, 298
BstZ17I	GTATAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	473
CfoI	GCGC	1 cut(s)	286
CseI	GACGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	362, 474
CviJI	RGCY	8 cut(s)	6, 33, 72, 142, 183, 273, 320, 427
CviKI_1	RGCY	8 cut(s)	6, 33, 72, 142, 183, 273, 320, 427
DdeI	CTNAG	3 cut(s)	89, 143, 256
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	329
FaeI	CATG	2 cut(s)	365, 477
FaiI	YATR	9 cut(s)	101, 113, 210, 270, 336, 363, 408, 419, 475
FatI	CATG	2 cut(s)	361, 473
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	34, 287
Fsp4HI	GCNGC	2 cut(s)	34, 287
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	34, 287
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	412
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	365, 477
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	3 cut(s)	16, 85, 421
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	2 cut(s)	214, 245
Hpy166II	GTNNAC	2 cut(s)	113, 294
Hpy188I	TCNGA	3 cut(s)	90, 157, 247
Hpy188III	TCNNGA	2 cut(s)	444, 474
Hpy8I	GTNNAC	2 cut(s)	113, 294
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	126, 359, 428
HpyCH4IV	ACGT	3 cut(s)	77, 237, 252
HpyCH4V	TGCA	3 cut(s)	36, 63, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 317
HpyF3I	CTNAG	3 cut(s)	89, 143, 256
HpySE526I	ACGT	3 cut(s)	77, 237, 252
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	365, 477
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	1 cut(s)	425
Lsp1109I	GCAGC	2 cut(s)	20, 298
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	3 cut(s)	77, 237, 252
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	3 cut(s)	241, 329, 353
MnlI	CCTC	4 cut(s)	35, 331, 431, 477
MseI	TTAA	5 cut(s)	21, 74, 105, 303, 342
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	69, 317
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	365, 477
NmuCI	GTSAC	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	285
PagI	TCATGA	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	16, 85, 421
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	35, 288
SaqAI	TTAA	5 cut(s)	21, 74, 105, 303, 342
SatI	GCNGC	2 cut(s)	34, 287
Sau3AI	GATC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	7 cut(s)	27, 74, 80, 118, 240, 255, 442
SfaNI	GCATC	1 cut(s)	437
Sse9I	AATT	3 cut(s)	241, 329, 353
SspI	AATATT	1 cut(s)	11
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	411
TaiI	ACGT	3 cut(s)	80, 240, 255
TasI	AATT	3 cut(s)	241, 329, 353
TfiI	GAWTC	3 cut(s)	16, 85, 421
Tru1I	TTAA	5 cut(s)	21, 74, 105, 303, 342
Tru9I	TTAA	5 cut(s)	21, 74, 105, 303, 342
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	33, 286
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	2 cut(s)	17, 189
XapI	RAATTY	2 cut(s)	329, 353
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.