Rh5DG359900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0020470
Physical Location & Seq
Forward (+)
53751074 .. 53752871
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG359900.1

Sequence Viewer

Length: 531 bp
ATGCTGTTCTTACTGAGCAGAAATGATTACATTTTATTTCCATCTATTCAAACCCTGTGGGAAGGATTATATTGGACTTGCCTGATGGATTGTTGGATGTTGACAAGGGTGATTTTCTTGGAGCTGCAATCCGTGAGAGGATGGACTACCAAAACTTCTTTCTCCAGGTTCACAACTAGAGCAGGAGAGAGACCTGAGGGTGCAGCAGCTAAACATAAGAGAAAGCACTCAAAGCAGGCTTCATCAAACTTTGAACAGACCTCTAGTATAGATGGTTCAAATGTTGACCATGAGAGAGACCTGGAAGATGCAAAGGATAGATCTAAGAGAAAGATGGTTCCTACAATTCATGACTGCAAGCAGTCTCCTTGCATTCCATCTGGTTCAGTCTCGCTTTCTCAAGGATCTCTCACAATTCGAACTCCAATTTCCCGATCGGGTTCAGTGAGGGTGAATGGGAAAGAGATAAGTTACAGTGAGTTTTTGGAGAGGTACATGAGCTACCACCCCTCAATAGCTAGCGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.11

Weight (kDa)

9.25

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020470)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0380461
rosa_samantha Rh1AG260500 Rh3BG097700 Rh5AG231300 Rh5AG445000 Rh5DG359900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 412
AfaI GTAC 1 cut(s) 494
AgsI TTSAA 3 cut(s) 50, 254, 279
AjnI CCWGG 2 cut(s) 164, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 4 cut(s) 124, 209, 501, 518
AluI AGCT 4 cut(s) 124, 209, 501, 518
Alw26I GTCTC 4 cut(s) 184, 291, 369, 394
AlwI GGATC 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 124, 203, 206
AsuHPI GGTGA 2 cut(s) 121, 463
AsuII TTCGAA 1 cut(s) 418
AsuNHI GCTAGC 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 195
BbvI GCAGC 3 cut(s) 111, 215, 218
BccI CCATC 6 cut(s) 49, 79, 135, 266, 328, 385
BciT130I CCWGG 2 cut(s) 166, 302
BcoDI GTCTC 4 cut(s) 184, 291, 369, 394
BfaI CTAG 3 cut(s) 177, 264, 519
BglII AGATCT 1 cut(s) 320
BisI GCNGC 3 cut(s) 125, 204, 207
BlsI GCNGC 3 cut(s) 126, 205, 208
Bme1390I CCNGG 2 cut(s) 166, 302
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 166, 302
BmsI GCATC 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 384
BsaI GGTCTC 2 cut(s) 184, 291
Bse21I CCTNAGG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 166, 302
BseGI GGATG 2 cut(s) 102, 146
BseMII CTCAG 2 cut(s) 5, 186
BseXI GCAGC 3 cut(s) 111, 215, 218
BsgI GTGCAG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 437
BsmAI GTCTC 4 cut(s) 184, 291, 369, 394
BsmI GAATGC 1 cut(s) 372
Bso31I GGTCTC 2 cut(s) 184, 291
Bsp119I TTCGAA 1 cut(s) 418
Bsp143I GATC 3 cut(s) 320, 404, 434
BspCNI CTCAG 2 cut(s) 6, 187
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 339
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 1 cut(s) 412
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 184, 291
BssMI GATC 3 cut(s) 320, 404, 434
Bst2UI CCWGG 2 cut(s) 166, 302
Bst4CI ACNGT 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 3 cut(s) 237, 359, 520
BstDEI CTNAG 3 cut(s) 14, 195, 324
BstF5I GGATG 2 cut(s) 102, 146
BstKTI GATC 3 cut(s) 323, 407, 437
BstMAI GTCTC 4 cut(s) 184, 291, 369, 394
BstMBI GATC 3 cut(s) 320, 404, 434
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 2 cut(s) 166, 302
BstSCI CCNGG 2 cut(s) 164, 300
BstV1I GCAGC 3 cut(s) 111, 215, 218
BstX2I RGATCY 2 cut(s) 320, 404
BstYI RGATCY 2 cut(s) 320, 404
Bsu36I CCTNAGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 102, 146
BtsIMutI CAGTG 2 cut(s) 450, 481
Cac8I GCNNGC 3 cut(s) 237, 359, 520
CciI TCATGA 1 cut(s) 349
Csp6I GTAC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 38, 73
CviAII CATG 3 cut(s) 290, 350, 496
CviJI RGCY 5 cut(s) 124, 209, 239, 501, 518
CviKI_1 RGCY 5 cut(s) 124, 209, 239, 501, 518
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 14, 195, 324
DpnI GATC 3 cut(s) 322, 406, 436
DpnII GATC 3 cut(s) 320, 404, 434
Eco31I GGTCTC 2 cut(s) 184, 291
Eco81I CCTNAGG 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 164, 300
FaeI CATG 3 cut(s) 293, 353, 499
FaiI YATR 6 cut(s) 70, 216, 269, 291, 351, 497
FatI CATG 3 cut(s) 289, 349, 495
Fnu4HI GCNGC 3 cut(s) 125, 204, 207
FokI GGATG 2 cut(s) 109, 153
Fsp4HI GCNGC 3 cut(s) 125, 204, 207
FspBI CTAG 3 cut(s) 177, 264, 519
GluI GCNGC 3 cut(s) 125, 204, 207
GsuI CTGGAG 1 cut(s) 148
Hin1II CATG 3 cut(s) 293, 353, 499
HincII GTYRAC 2 cut(s) 102, 286
HindII GTYRAC 2 cut(s) 102, 286
HphI GGTGA 2 cut(s) 121, 463
Hpy166II GTNNAC 3 cut(s) 102, 171, 286
Hpy188III TCNNGA 2 cut(s) 350, 432
Hpy8I GTNNAC 3 cut(s) 102, 171, 286
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4V TGCA 5 cut(s) 127, 203, 311, 357, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 3 cut(s) 14, 195, 324
Hsp92II CATG 3 cut(s) 293, 353, 499
Kzo9I GATC 3 cut(s) 320, 404, 434
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 111, 215, 218
LweI GCATC 1 cut(s) 298
MaeI CTAG 3 cut(s) 177, 264, 519
MaeIII GTNAC 1 cut(s) 470
MalI GATC 3 cut(s) 322, 406, 436
MboI GATC 3 cut(s) 320, 404, 434
MboII GAAGA 1 cut(s) 317
MflI RGATCY 2 cut(s) 320, 404
MluCI AATT 3 cut(s) 345, 414, 426
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 6 cut(s) 131, 190, 271, 441, 483, 520
MspR9I CCNGG 2 cut(s) 166, 302
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 2 cut(s) 166, 302
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 3 cut(s) 320, 404, 434
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 3 cut(s) 293, 353, 499
NlaIV GGNNCC 1 cut(s) 339
NspV TTCGAA 1 cut(s) 418
PagI TCATGA 1 cut(s) 349
PctI GAATGC 1 cut(s) 372
PkrI GCNGC 3 cut(s) 126, 205, 208
Ple19I CGATCG 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 164, 300
PspGI CCWGG 2 cut(s) 164, 300
PspN4I GGNNCC 1 cut(s) 339
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
PsuI RGATCY 2 cut(s) 320, 404
PvuI CGATCG 1 cut(s) 437
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SatI GCNGC 3 cut(s) 125, 204, 207
Sau3AI GATC 3 cut(s) 320, 404, 434
ScrFI CCNGG 2 cut(s) 166, 302
SetI ASST 9 cut(s) 126, 170, 196, 211, 263, 303, 494, 503, 520
SfaNI GCATC 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 345, 414, 426
SspMI CTAG 3 cut(s) 177, 264, 519
StyD4I CCNGG 2 cut(s) 164, 300
TaaI ACNGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 418
TasI AATT 3 cut(s) 345, 414, 426
TscAI CASTG 2 cut(s) 450, 481
TseI GCWGC 3 cut(s) 124, 203, 206
TspDTI ATGAA 2 cut(s) 231, 338
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 450, 481
XspI CTAG 3 cut(s) 177, 264, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.