Rh6AG373700

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017471
Physical Location & Seq
Forward (+)
57243709 .. 57244035
327 bp
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UTR
Exon/CDS
Intron
Rh6AG373700.1

Sequence Viewer

Length: 327 bp
ATGAACAACTATCTTATCAGAGCTGTGTTCATGTGTGGAAACTATGACGGCAAGAATCAAAAACCAGTATTTGAACTTTATCTTGGTGTTAATCCGTGGATAACAGTGAAAGATGCATATGTGGTCTATGAGATTATACATAGTCCCTTGATAGTGTGTCTTGTGAACAATAATACTGGAGTACGGAGTACCATACATTTCAGCATTGGAACTTGGGAATATGGACAATATTATTTACCAAATTGGTGCTGGAGCATCTTTCGCCTTCATTTCAAGAATCAGCCTTGGTGGCTCCAATACGACAATCAGGTACTTCAAAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

108

Amino Acids

12.93

Weight (kDa)

7.72

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 60 5e-16 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05700 AT1G05700 AT2G19190 AT2G19210 AT2G19230 AT2G19230 AT4G29990 AT4G29990
rosa_chinensis RchiOBHm_Chr2g0141231
rosa_samantha Rh6AG373700 Rh6BG382300 Rh6DG374800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 183, 190, 312
AgsI TTSAA 3 cut(s) 74, 274, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 2 cut(s) 23, 321
AluI AGCT 2 cut(s) 23, 321
BceAI ACGGC 1 cut(s) 64
BfaI CTAG 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 2 cut(s) 103, 264
BpmI CTGGAG 2 cut(s) 198, 271
BsaJI CCNNGG 2 cut(s) 95, 284
Bse1I ACTGG 2 cut(s) 65, 181
BseDI CCNNGG 2 cut(s) 95, 284
BseNI ACTGG 2 cut(s) 65, 181
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 65, 181
BssECI CCNNGG 2 cut(s) 95, 284
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 261, 289
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 111
Csp6I GTAC 3 cut(s) 182, 189, 311
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 23, 283, 292, 321
CviKI_1 RGCY 4 cut(s) 23, 283, 292, 321
CviQI GTAC 3 cut(s) 182, 189, 311
Eco130I CCWWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 34
FaiI YATR 9 cut(s) 32, 45, 118, 120, 129, 137, 141, 194, 222
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 30
FauNDI CATATG 1 cut(s) 118
FspBI CTAG 1 cut(s) 325
GsuI CTGGAG 2 cut(s) 198, 271
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 2 cut(s) 55, 277
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 289
Hsp92II CATG 1 cut(s) 34
LmnI GCTCC 2 cut(s) 252, 297
LpnPI CCDG 4 cut(s) 78, 162, 235, 293
LweI GCATC 2 cut(s) 103, 264
MaeI CTAG 1 cut(s) 325
MluCI AATT 1 cut(s) 241
Mph1103I ATGCAT 1 cut(s) 118
MseI TTAA 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 261, 289
NdeI CATATG 1 cut(s) 118
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 55, 277
PspN4I GGNNCC 1 cut(s) 293
RsaI GTAC 3 cut(s) 183, 190, 312
RsaNI GTAC 3 cut(s) 182, 189, 311
SaqAI TTAA 1 cut(s) 90
SetI ASST 3 cut(s) 25, 312, 323
SfaNI GCATC 2 cut(s) 103, 264
Sse9I AATT 1 cut(s) 241
SspI AATATT 1 cut(s) 230
SspMI CTAG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 241
TfiI GAWTC 2 cut(s) 55, 277
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 17, 19, 257
TspGWI ACGGA 2 cut(s) 84, 199
TspRI CASTG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.