Rh6DG374800

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017471
Physical Location & Seq
Forward (+)
56947267 .. 56947859
593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG374800.1

Sequence Viewer

Length: 318 bp
ATGAACAACTATCTTATCAGAGCTGTGTTTATGTGTGGAAACTATGACGGCAAGAATCAAAAACCAGTATTTGAACTTTATCTTGGTGTTAATCCGTGGATAACAGTGAAAGATGCATATGTGGTCTATGAGATTATGCATAGTCCCTTGAGAGATATTATACAAGTGTGCCTTGTGAACAATAATACTGGTGTATCATACATTTCAGCATTGGAACTTGGGAAAATGGACAATACTATTTACCAAATTGGTGCTGGAGCAGCTCTCGCCTTGATTTCAAGAATCAGCCTTGGTGGCTCCAATACGACAATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.62

Weight (kDa)

7.75

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 105 7.8e-31 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05700 AT1G05700 AT2G19190 AT2G19210 AT2G19230 AT2G19230 AT4G29990 AT4G29990
rosa_chinensis RchiOBHm_Chr2g0141231
rosa_samantha Rh6AG373700 Rh6BG382300 Rh6DG374800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 74, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 2 cut(s) 23, 263
AluI AGCT 2 cut(s) 23, 263
ApeKI GCWGC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BbvI GCAGC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 64
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 95, 289
Bse1I ACTGG 2 cut(s) 65, 193
BseDI CCNNGG 2 cut(s) 95, 289
BseNI ACTGG 2 cut(s) 65, 193
BseXI GCAGC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 65, 193
BssECI CCNNGG 2 cut(s) 95, 289
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 260, 266, 294
BstV1I GCAGC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 111
CviJI RGCY 4 cut(s) 23, 263, 288, 297
CviKI_1 RGCY 4 cut(s) 23, 263, 288, 297
Eco130I CCWWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 2 cut(s) 118, 141
ErhI CCWWGG 1 cut(s) 289
FaiI YATR 9 cut(s) 32, 45, 118, 120, 129, 137, 141, 161, 199
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 276
HinfI GANTC 2 cut(s) 55, 282
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 116, 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 266, 294
LmnI GCTCC 2 cut(s) 257, 302
LpnPI CCDG 4 cut(s) 78, 174, 240, 298
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 103
MluCI AATT 1 cut(s) 246
Mph1103I ATGCAT 2 cut(s) 118, 141
MseI TTAA 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 260, 266, 294
NdeI CATATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 298
NsiI ATGCAT 2 cut(s) 118, 141
PfeI GAWTC 2 cut(s) 55, 282
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 261
SetI ASST 3 cut(s) 25, 265, 317
SfaNI GCATC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 246
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 246
TfiI GAWTC 2 cut(s) 55, 282
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
Zsp2I ATGCAT 2 cut(s) 118, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.