Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0026402

Physical Location & Seq

Genomic Coordinates Forward (+)

64001251 .. 64002573

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG455000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCAAGACCACTCCAAGCAACAGCGCTCCACCACCTGATTTAGCAACTCTGCTTCCACCAGTGGCCACCAGTCCTAAACCACCACCCACTTTGGCCAGAACTCTGCCACCTTCGCCTAGTAATGCTGTAACACCTTTGCCTAGTAATGCTGTAACACCTTTGCCTACAACAACATTGACACCACCTCCATTGATCCATTCACCATCACCGTCCTTATTGCCGGCCACCTTGCAAGTTCAGAAGCCACAGCCAAAAGCAGCAGCAGGCCTCGTAGCTGGATGTGTCATTGTTGGAGTTGTTGTAGTTTTCCTCCTCCTCGGAATTGTACTTATTTGCTACAAGCGTAGGAGTAGAAAGAACAACGCTATTCCGGAAGATTACTATAAACCACCCTCCTTGGGACCAAAAGGTTATAAATTCAATACCTATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.16

Weight (kDa)

10.02

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026402)

Species	Orthologous Gene IDs
rosa_samantha	Rh6AG455000 Rh6BG446500 Rh6DG455500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	373
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	4 cut(s)	3, 66, 96, 225
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	1 cut(s)	330
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	424
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	5 cut(s)	3, 66, 96, 225, 268
ApeKI	GCWGC	2 cut(s)	260, 263
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	195, 201
AvaII	GGWCC	1 cut(s)	404
BalI	TGGCCA	3 cut(s)	5, 68, 98
BbvI	GCAGC	2 cut(s)	272, 275
BccI	CCATC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	120, 144
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	261, 264
BlsI	GCNGC	2 cut(s)	262, 265
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	319, 399
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	62, 72
BseAI	TCCGGA	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	319, 399
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseNI	ACTGG	2 cut(s)	62, 72
BseRI	GAGGAG	2 cut(s)	305, 308
BseXI	GCAGC	2 cut(s)	272, 275
BshFI	GGCC	5 cut(s)	5, 68, 98, 227, 270
BsiSI	CCGG	2 cut(s)	224, 374
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	5 cut(s)	5, 68, 98, 227, 270
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	195
BspANI	GGCC	5 cut(s)	5, 68, 98, 227, 270
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	62, 72
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	319, 399
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	225, 268
BstF5I	GGATG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	272, 275
BsuRI	GGCC	5 cut(s)	5, 68, 98, 227, 270
BtsCI	GGATG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	225, 268
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	329
CspCI	CAANNNNNGTGG	6 cut(s)	75, 110, 174, 209, 381, 416
CviJI	RGCY	8 cut(s)	5, 68, 98, 227, 247, 253, 270, 278
CviKI_1	RGCY	8 cut(s)	5, 68, 98, 227, 247, 253, 270, 278
CviQI	GTAC	1 cut(s)	329
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	4 cut(s)	3, 66, 96, 225
Eco130I	CCWWGG	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaiI	YATR	4 cut(s)	387, 417, 432, 436
FaqI	GGGAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	261, 264
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	261, 264
FspBI	CTAG	2 cut(s)	120, 144
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	261, 264
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	5 cut(s)	5, 68, 98, 227, 270
HapII	CCGG	2 cut(s)	224, 374
HhaI	GCGC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	224, 374
HphI	GGTGA	2 cut(s)	195, 201
Hpy188I	TCNGA	2 cut(s)	243, 323
Hpy188III	TCNNGA	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	51, 75, 85, 112, 237, 252, 264, 387
Lsp1109I	GCAGC	2 cut(s)	272, 275
MaeI	CTAG	2 cut(s)	120, 144
MaeIII	GTNAC	2 cut(s)	130, 154
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	389
MlsI	TGGCCA	3 cut(s)	5, 68, 98
MluCI	AATT	2 cut(s)	324, 419
MluNI	TGGCCA	3 cut(s)	5, 68, 98
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	198, 281, 323, 326, 329, 406
Mox20I	TGGCCA	3 cut(s)	5, 68, 98
MroI	TCCGGA	1 cut(s)	373
MroNI	GCCGGC	1 cut(s)	223
MscI	TGGCCA	3 cut(s)	5, 68, 98
Msp20I	TGGCCA	3 cut(s)	5, 68, 98
MspI	CCGG	2 cut(s)	224, 374
MwoI	GCNNNNNNNGC	1 cut(s)	115
NaeI	GCCGGC	1 cut(s)	225
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	262, 265
PsiI	TTATAA	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SatI	GCNGC	2 cut(s)	261, 264
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	404
SetI	ASST	9 cut(s)	40, 115, 139, 163, 190, 233, 280, 415, 431
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	324, 419
SseBI	AGGCCT	1 cut(s)	270
SspMI	CTAG	2 cut(s)	120, 144
StuI	AGGCCT	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	213
TasI	AATT	2 cut(s)	324, 419
TatI	WGTACW	1 cut(s)	328
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	2 cut(s)	260, 263
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	2 cut(s)	120, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.