Rh6DG455500

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
62678036 .. 62679792
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG455500.1

Sequence Viewer

Length: 1614 bp
ATGTCTTCACCGCCGTGGTCTCTGCCTTCGGCTGCCGTTCCTGTCACCACACCACCACCACTTCCACCGTCACAGCCACCGGCATTGCCGCCACCATCGCCACAGTCACCACCTTTTGTATCCCCGCTATTTCCACCTACTAGTCTTCCTGCCCTGCCTCCTGTACACAACTCTATCCCTCCTGTTTCCTCACCATTGCCATCTGTGGTCCAACCTCCACCCCCACCAGTCACCTCTCCACCACCGCCGTCTGTCACTTCTCCTCCTCCACCTTCACTAACCTTTCCGCCACCACCTTCACTACCGCCACCGACTCCATTGCCATCAAGACCTTCTCCACCTCCACCTCCACAGCCTACATTATCACCACCACCATTACCAACACCAAAAACACCATATCTTTCTCCTCCAACCAAACCACTAACTTCTCCGCCGCTGCCACCACCCTCAACAACTCCAACCAACGAGTCTCCACCACCTACATTGTCAACTCCCCTACCTCCGGTGACCACCACTACTCCTCCACCTCCTTTAGCCACTCCAAGCAACAGCGCTCCACCACCTGATTTAGCAACTCTGCTTCCACCAGTGGCCACCAGTCCTAAACCACCACCCACTTTGGCCAGAACTCTGCCACCTTCGCCTAGTAATGCTGTAACACCTTTGCCTGGTAATGCTGTAACACCTTTGCCTACAACAACATTGACACCACCTCCATTGATCCATTCACCATCACCGTCCTTATTGCCGGCCACCTTGCAAGTTCAGAAGCCACAGCCAAAAGCAGCAGCAGGCCTTGTAGCTGGATGTGTCATTGTTGGAGTTGTTGTAGTTTTCCTCCTCCTCGGAATTGTACTTATTTGCTACAAGCGTAGGAGTAGAAAGAACAACGCTATTCCGGAAGATTACTATAAACCACCCTCCTTGGGACCAAAAGATGGCTGTTATGATGCTGTTCAGCCCCATCACAATGTTCCTCAACCTGGCGTCCATGTTATCAGGGTGCTGTCCAGCACATCAACATCTCCAATGCGCCGTGCCGCTGGCTCTGAGGTTTTATATGCACATCAACCTCAATGGCTTGGTTTTCCCATGGACATCTCAAATGGAACATTCACCTATGATCAATTGTTGGTAGCAACAAATGGGTTTTCAGAGGCCAACCTTCTTGGACAAGGCGGTTTTGGGTATGTCCACAAGGGAGTACTTCCAGGTGGGAAGGAAGTTGCAGTGAAGCAGTTAAAGACAGGAAGCCGGCAAGGGGAGCGAGAGTTTCATGCTGAGGTTGACATCATTAGCCTGGTGCATCACAAGCATCTAGTTTCATTGGTAGGGCACTGTATCAAGGGGGCTGAGAGGTTGCTTGTATATGAGTTTGTTCCAAATAACACCTTAGAATTCCACTTACATGGTAAGAGTAGTCCATTTTGGTTCATCTCTGGACTTACTTACTCTAGTCCTTTTGGGAATGTTCAAATCAAGATTAGATTGGATTTCATTAAATGTGTTGAGATGAATACAATGCATTGCAGGATTAGGACAGACTGTTTTGGAGTGGGAAATAAGATTGAAAATAGCTACTGGCTCTGCAAAAGGACTAGCATATCTCCATGA

Protein Analysis

537

Amino Acids

56.83

Weight (kDa)

9.4

Isoelectric Point (pI)

78.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 386 - 470 9.5e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 388 - 474 5.4e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0026402)

Species Orthologous Gene IDs
rosa_samantha Rh6AG455000 Rh6BG446500 Rh6DG455500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 938
AccIII TCCGGA 1 cut(s) 898
AclWI GGATC 1 cut(s) 715
AcoI YGGCCR 3 cut(s) 591, 621, 750
AcsI RAATTY 1 cut(s) 1397
AcyI GRCGYC 1 cut(s) 987
AfaI GTAC 3 cut(s) 165, 855, 1206
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 6 cut(s) 502, 668, 926, 938, 983, 1261
AgsI TTSAA 2 cut(s) 1475, 1571
AhlI ACTAGT 1 cut(s) 140
AjnI CCWGG 4 cut(s) 667, 982, 1210, 1299
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 2 cut(s) 803, 1578
AluI AGCT 2 cut(s) 803, 1578
Alw26I GTCTC 2 cut(s) 24, 474
AlwI GGATC 1 cut(s) 715
Aor13HI TCCGGA 1 cut(s) 898
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 5 cut(s) 591, 621, 750, 793, 1158
ApeKI GCWGC 4 cut(s) 32, 436, 785, 788
ApoI RAATTY 1 cut(s) 1397
AspLEI GCGC 2 cut(s) 554, 1035
AspS9I GGNCC 2 cut(s) 208, 929
AsuHPI GGTGA 9 cut(s) 37, 99, 183, 223, 357, 517, 720, 726, 1108
AvaII GGWCC 2 cut(s) 208, 929
BaeGI GKGCMC 1 cut(s) 1338
BalI TGGCCA 2 cut(s) 593, 623
BbsI GAAGAC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 1281
BbvI GCAGC 4 cut(s) 19, 423, 797, 800
BccI CCATC 6 cut(s) 103, 208, 331, 739, 932, 972
BceAI ACGGC 3 cut(s) 20, 232, 1020
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 4 cut(s) 669, 984, 1212, 1301
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 2 cut(s) 24, 474
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 5 cut(s) 141, 645, 1319, 1455, 1599
BfoI RGCGCY 1 cut(s) 555
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 7 cut(s) 33, 89, 434, 437, 786, 789, 1041
BlsI GCNGC 7 cut(s) 34, 90, 435, 438, 787, 790, 1042
BmcAI AGTACT 1 cut(s) 1206
Bme1390I CCNGG 4 cut(s) 669, 984, 1212, 1301
Bme18I GGWCC 2 cut(s) 208, 929
BmgT120I GGNCC 2 cut(s) 208, 929
BmiI GGNNCC 1 cut(s) 930
BmrFI CCNGG 4 cut(s) 669, 984, 1212, 1301
BmsI GCATC 3 cut(s) 940, 1315, 1324
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 1281
BsaHI GRCGYC 1 cut(s) 987
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 14, 844, 924, 1092
BsaWI WCCGGW 2 cut(s) 502, 898
Bsc4I CCNNNNNNNGG 6 cut(s) 502, 668, 926, 938, 983, 1261
Bse118I RCCGGY 3 cut(s) 79, 748, 1254
Bse1I ACTGG 4 cut(s) 227, 587, 597, 1586
Bse3DI GCAATG 4 cut(s) 83, 194, 317, 1525
BseAI TCCGGA 1 cut(s) 898
BseBI CCWGG 4 cut(s) 669, 984, 1212, 1301
BseDI CCNNGG 4 cut(s) 14, 844, 924, 1092
BseGI GGATG 1 cut(s) 812
BseLI CCNNNNNNNGG 6 cut(s) 502, 668, 926, 938, 983, 1261
BseMI GCAATG 4 cut(s) 83, 194, 317, 1525
BseMII CTCAG 3 cut(s) 1041, 1272, 1344
BseNI ACTGG 4 cut(s) 227, 587, 597, 1586
BseRI GAGGAG 6 cut(s) 252, 255, 396, 510, 830, 833
BseSI GKGCMC 1 cut(s) 1338
BseXI GCAGC 4 cut(s) 19, 423, 797, 800
BshFI GGCC 5 cut(s) 593, 623, 752, 795, 1160
BsiSI CCGG 5 cut(s) 80, 503, 749, 899, 1255
BslFI GGGAC 1 cut(s) 942
BslI CCNNNNNNNGG 6 cut(s) 502, 668, 926, 938, 983, 1261
BsmAI GTCTC 2 cut(s) 24, 474
BsmFI GGGAC 1 cut(s) 942
BsnI GGCC 5 cut(s) 593, 623, 752, 795, 1160
Bso31I GGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 1338
Bsp13I TCCGGA 1 cut(s) 898
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 720, 1123
Bsp19I CCATGG 1 cut(s) 1092
BspANI GGCC 5 cut(s) 593, 623, 752, 795, 1160
BspCNI CTCAG 3 cut(s) 1042, 1273, 1345
BspEI TCCGGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 930
BspPI GGATC 1 cut(s) 715
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 4 cut(s) 83, 194, 317, 1525
BsrFI RCCGGY 3 cut(s) 79, 748, 1254
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 4 cut(s) 227, 587, 597, 1586
BssAI RCCGGY 3 cut(s) 79, 748, 1254
BssECI CCNNGG 4 cut(s) 14, 844, 924, 1092
BssMI GATC 2 cut(s) 720, 1123
BssNI GRCGYC 1 cut(s) 987
BssT1I CCWWGG 2 cut(s) 924, 1092
Bst2UI CCWGG 4 cut(s) 669, 984, 1212, 1301
Bst4CI ACNGT 5 cut(s) 69, 105, 738, 1340, 1547
BstACI GRCGYC 1 cut(s) 987
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 750, 793, 1045, 1256
BstDEI CTNAG 4 cut(s) 1050, 1281, 1353, 1393
BstDSI CCRYGG 2 cut(s) 14, 1092
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 1 cut(s) 812
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 554, 1035
BstKTI GATC 2 cut(s) 723, 1126
BstMAI GTCTC 2 cut(s) 24, 474
BstMBI GATC 2 cut(s) 720, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 97, 640, 1264, 1312
BstNI CCWGG 4 cut(s) 669, 984, 1212, 1301
BstPI GGTNACC 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 667, 982, 1210, 1299
BstSLI GKGCMC 1 cut(s) 1338
BstV1I GCAGC 4 cut(s) 19, 423, 797, 800
BstV2I GAAGAC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1409
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 5 cut(s) 593, 623, 752, 795, 1160
BtgI CCRYGG 2 cut(s) 14, 1092
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 812
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 3 cut(s) 594, 1236, 1336
Cac8I GCNNGC 4 cut(s) 750, 793, 1045, 1256
CfoI GCGC 2 cut(s) 554, 1035
Cfr10I RCCGGY 3 cut(s) 79, 748, 1254
Cfr13I GGNCC 2 cut(s) 208, 929
CseI GACGC 1 cut(s) 976
Csp6I GTAC 3 cut(s) 164, 854, 1205
CviAII CATG 5 cut(s) 992, 1093, 1277, 1409, 1611
CviQI GTAC 3 cut(s) 164, 854, 1205
DdeI CTNAG 4 cut(s) 1050, 1281, 1353, 1393
DpnI GATC 2 cut(s) 722, 1125
DpnII GATC 2 cut(s) 720, 1123
EaeI YGGCCR 3 cut(s) 591, 621, 750
EciI GGCGGA 2 cut(s) 276, 420
Eco130I CCWWGG 2 cut(s) 924, 1092
Eco147I AGGCCT 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 208, 929
Eco47III AGCGCT 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 505
EcoO65I GGTNACC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 1397
EcoRII CCWGG 4 cut(s) 667, 982, 1210, 1299
EcoT14I CCWWGG 2 cut(s) 924, 1092
EcoT22I ATGCAT 1 cut(s) 1527
ErhI CCWWGG 2 cut(s) 924, 1092
FaeI CATG 5 cut(s) 995, 1096, 1280, 1412, 1614
FaqI GGGAC 1 cut(s) 942
FatI CATG 5 cut(s) 991, 1092, 1276, 1408, 1610
FauI CCCGC 1 cut(s) 132
FbaI TGATCA 1 cut(s) 1123
Fnu4HI GCNGC 7 cut(s) 33, 89, 434, 437, 786, 789, 1041
FokI GGATG 1 cut(s) 819
Fsp4HI GCNGC 7 cut(s) 33, 89, 434, 437, 786, 789, 1041
FspBI CTAG 5 cut(s) 141, 645, 1319, 1455, 1599
GlaI GCGC 2 cut(s) 553, 1034
GluI GCNGC 7 cut(s) 33, 89, 434, 437, 786, 789, 1041
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 5 cut(s) 593, 623, 752, 795, 1160
HapII CCGG 5 cut(s) 80, 503, 749, 899, 1255
HgaI GACGC 1 cut(s) 976
HhaI GCGC 2 cut(s) 554, 1035
Hin1I GRCGYC 1 cut(s) 987
Hin1II CATG 5 cut(s) 995, 1096, 1280, 1412, 1614
Hin6I GCGC 2 cut(s) 552, 1033
HinP1I GCGC 2 cut(s) 552, 1033
HincII GTYRAC 2 cut(s) 489, 1288
HindII GTYRAC 2 cut(s) 489, 1288
HinfI GANTC 2 cut(s) 313, 467
HpaII CCGG 5 cut(s) 80, 503, 749, 899, 1255
HphI GGTGA 9 cut(s) 37, 99, 183, 223, 357, 517, 720, 726, 1108
Hpy166II GTNNAC 4 cut(s) 166, 489, 1195, 1288
Hpy188I TCNGA 4 cut(s) 768, 848, 1051, 1156
Hpy188III TCNNGA 4 cut(s) 327, 899, 1440, 1480
Hpy8I GTNNAC 4 cut(s) 166, 489, 1195, 1288
HpyAV CCTTC 7 cut(s) 36, 282, 306, 342, 648, 1175, 1213
HpyCH4III ACNGT 5 cut(s) 69, 105, 738, 1340, 1547
HpyCH4V TGCA 7 cut(s) 760, 1064, 1229, 1306, 1525, 1530, 1590
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 640, 1264, 1312
HpyF3I CTNAG 4 cut(s) 1050, 1281, 1353, 1393
Hsp92I GRCGYC 1 cut(s) 987
Hsp92II CATG 5 cut(s) 995, 1096, 1280, 1412, 1614
HspAI GCGC 2 cut(s) 552, 1033
Kpn2I TCCGGA 1 cut(s) 898
KroI GCCGGC 2 cut(s) 748, 1254
KroNI GCCGGC 2 cut(s) 750, 1256
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 2 cut(s) 720, 1123
LmnI GCTCC 2 cut(s) 559, 1264
Lsp1109I GCAGC 4 cut(s) 19, 423, 797, 800
LweI GCATC 3 cut(s) 940, 1315, 1324
MaeI CTAG 5 cut(s) 141, 645, 1319, 1455, 1599
MaeIII GTNAC 8 cut(s) 43, 69, 105, 229, 253, 505, 655, 679
MalI GATC 2 cut(s) 722, 1125
MboI GATC 2 cut(s) 720, 1123
MboII GAAGA 2 cut(s) 137, 914
MfeI CAATTG 1 cut(s) 1127
MhlI GDGCHC 1 cut(s) 1338
MlsI TGGCCA 2 cut(s) 593, 623
MluCI AATT 3 cut(s) 849, 1127, 1397
MluNI TGGCCA 2 cut(s) 593, 623
MlyI GAGTC 2 cut(s) 307, 476
MmeI TCCRAC 4 cut(s) 235, 434, 482, 799
Mox20I TGGCCA 2 cut(s) 593, 623
Mph1103I ATGCAT 1 cut(s) 1527
MroI TCCGGA 1 cut(s) 898
MroNI GCCGGC 2 cut(s) 748, 1254
MscI TGGCCA 2 cut(s) 593, 623
MseI TTAA 2 cut(s) 1241, 1500
MslI CAYNNNNRTG 3 cut(s) 13, 969, 1407
Msp20I TGGCCA 2 cut(s) 593, 623
MspA1I CMGCKG 2 cut(s) 436, 1043
MspI CCGG 5 cut(s) 80, 503, 749, 899, 1255
MspR9I CCNGG 4 cut(s) 669, 984, 1212, 1301
MunI CAATTG 1 cut(s) 1127
MvaI CCWGG 4 cut(s) 669, 984, 1212, 1301
MwoI GCNNNNNNNGC 4 cut(s) 97, 640, 1264, 1312
NaeI GCCGGC 2 cut(s) 750, 1256
NcoI CCATGG 1 cut(s) 1092
NdeII GATC 2 cut(s) 720, 1123
NgoMIV GCCGGC 2 cut(s) 748, 1254
NlaIII CATG 5 cut(s) 995, 1096, 1280, 1412, 1614
NlaIV GGNNCC 1 cut(s) 930
NmuCI GTSAC 6 cut(s) 43, 69, 105, 229, 253, 505
NsiI ATGCAT 1 cut(s) 1527
OliI CACNNNNGTG 1 cut(s) 13
PceI AGGCCT 1 cut(s) 795
PdiI GCCGGC 2 cut(s) 750, 1256
PflMI CCANNNNNTGG 1 cut(s) 938
PkrI GCNGC 7 cut(s) 34, 90, 435, 438, 787, 790, 1042
PleI GAGTC 2 cut(s) 307, 475
PpsI GAGTC 2 cut(s) 307, 475
Psp6I CCWGG 4 cut(s) 667, 982, 1210, 1299
PspEI GGTNACC 1 cut(s) 505
PspGI CCWGG 4 cut(s) 667, 982, 1210, 1299
PspN4I GGNNCC 1 cut(s) 930
PspPI GGNCC 2 cut(s) 208, 929
RsaI GTAC 3 cut(s) 165, 855, 1206
RsaNI GTAC 3 cut(s) 164, 854, 1205
RseI CAYNNNNRTG 3 cut(s) 13, 969, 1407
SaqAI TTAA 2 cut(s) 1241, 1500
SatI GCNGC 7 cut(s) 33, 89, 434, 437, 786, 789, 1041
Sau3AI GATC 2 cut(s) 720, 1123
Sau96I GGNCC 2 cut(s) 208, 929
ScaI AGTACT 1 cut(s) 1206
SchI GAGTC 2 cut(s) 307, 476
ScrFI CCNGG 4 cut(s) 669, 984, 1212, 1301
SduI GDGCHC 1 cut(s) 1338
SfaNI GCATC 3 cut(s) 940, 1315, 1324
SinI GGWCC 2 cut(s) 208, 929
SmiMI CAYNNNNRTG 3 cut(s) 13, 969, 1407
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 849, 1127, 1397
SseBI AGGCCT 1 cut(s) 795
SspMI CTAG 5 cut(s) 141, 645, 1319, 1455, 1599
StuI AGGCCT 1 cut(s) 795
StyD4I CCNGG 4 cut(s) 667, 982, 1210, 1299
StyI CCWWGG 2 cut(s) 924, 1092
TaaI ACNGT 5 cut(s) 69, 105, 738, 1340, 1547
TasI AATT 3 cut(s) 849, 1127, 1397
TatI WGTACW 3 cut(s) 163, 853, 1204
TauI GCSGC 3 cut(s) 91, 436, 1043
Tru1I TTAA 2 cut(s) 1241, 1500
Tru9I TTAA 2 cut(s) 1241, 1500
TscAI CASTG 3 cut(s) 594, 1236, 1343
TseFI GTSAC 6 cut(s) 43, 69, 105, 229, 253, 505
TseI GCWGC 4 cut(s) 32, 436, 785, 788
Tsp45I GTSAC 6 cut(s) 43, 69, 105, 229, 253, 505
TspDTI ATGAA 5 cut(s) 1265, 1314, 1423, 1486, 1529
TspRI CASTG 3 cut(s) 594, 1236, 1343
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 2 cut(s) 208, 929
XapI RAATTY 1 cut(s) 1397
XspI CTAG 5 cut(s) 141, 645, 1319, 1455, 1599
ZrmI AGTACT 1 cut(s) 1206
Zsp2I ATGCAT 1 cut(s) 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.