Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0026402

Physical Location & Seq

Genomic Coordinates Reverse (-)

66193127 .. 66194494

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG446500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCTTCACCGCCGTGGTCTCTGCCTTCGGCTGCCGTTCCTGTCACCACACCGCCACCACTTCCACCGTCACAGCCACCGGCATTGCCGCCACCATCGCCACAGACACCACCTTTTGTATCCCCGCTATTTCCACCTACTAGTCTTCCTGCCCTGCCTCCTGTACACAACTCTATCCCTCCTGTTTCCTCACCATTGCCATCTGTGGTCCAACCTCCACCCCCACCAGTCACCTCTCCACCACCGCCGTCTGTCACTTCTCCTCCTCCACCTTCACTAACCTTTCCGCCACCACCTTCACTACCGCCACCAACTCCATTGCCATCAAGACCTTCTCCACCTCCACAGCCTACATTATCACCACCACCATTACCAACACCAAAAACACCATATCTTTCTCCTCCAATCAAACCACTAACTTCTCCGCCGCTGCCACCACCCTCAACAACTCCAACCAACGACTCTCCACCACCTACATTGTCAACTCCCCTACCTCCGGTGACCACCACTACTCCTCCACCTCCTTTAGCCACTCCAAGCAACAGCGCTCCACCATCTGATTTAGCAACTCTGCTTCCACCAGTGGCCACCAGTCCTAAACCACCACCCACTTTGGCCAGAACTCTGCCACCTTCGCCTAGTAATGCTGTAACACCTTTGCCTGGTAATGCTGTAACACCTTTGCCTACAACAACATTGACACCACCTCCATTGATCCATTCACCATCACCGTCCTTATTGCCGGCCACCTTGCAAGTTCAGAAGCCACAGCCAAAAGCAGCAGCAGGCCTCGTAGCTGGATGTGTCATTGTTGGAGTTGTTGTAGTTTTCCTCCTCCTCGGAATTGTACTTATTTGCTACAAGCGTAGGAGTAGAAAGAACAACGCTATTCCGGAAGATTACTATAAACCACCCTCCTTGGGAAAAGATGGCTGTTATGATGCTGTTCAGCCCCATCACAATGTTCCTCAACCTGGCGTCCATGTTATCAGGGTGCTGTCCAGCACATCAACATCTCCAATGCGCCGTGCCGCTGGCTCTGAGCAACAAATGGGTTTTCAGAGGCCAACCTTCTTGGACAAGGCGGTTTTGGGTATGTCCACAAGGGAGTACTTCCAGGTGGGAAGGAAGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

39.31

Weight (kDa)

10.06

Isoelectric Point (pI)

95.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026402)

Species	Orthologous Gene IDs
rosa_samantha	Rh6AG455000 Rh6BG446500 Rh6DG455500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	892
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	3 cut(s)	585, 615, 744
AcyI	GRCGYC	1 cut(s)	978
AfaI	GTAC	3 cut(s)	165, 849, 1112
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	4 cut(s)	496, 662, 920, 974
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	3 cut(s)	661, 973, 1116
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	797
AluI	AGCT	1 cut(s)	797
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	709
Aor13HI	TCCGGA	1 cut(s)	892
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	5 cut(s)	585, 615, 744, 787, 1064
ApeKI	GCWGC	4 cut(s)	32, 430, 779, 782
AspLEI	GCGC	2 cut(s)	548, 1026
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	7 cut(s)	37, 183, 223, 351, 511, 714, 720
AvaII	GGWCC	1 cut(s)	208
BalI	TGGCCA	2 cut(s)	587, 617
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	19, 417, 791, 794
BccI	CCATC	7 cut(s)	103, 208, 331, 562, 733, 923, 963
BceAI	ACGGC	3 cut(s)	20, 232, 1011
BciT130I	CCWGG	3 cut(s)	663, 975, 1118
BciVI	GTATCC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	24
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	2 cut(s)	141, 639
BfoI	RGCGCY	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	7 cut(s)	33, 89, 428, 431, 780, 783, 1032
BlsI	GCNGC	7 cut(s)	34, 90, 429, 432, 781, 784, 1033
BmcAI	AGTACT	1 cut(s)	1112
Bme1390I	CCNGG	3 cut(s)	663, 975, 1118
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmrFI	CCNGG	3 cut(s)	663, 975, 1118
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	978
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	14, 838, 918
BsaWI	WCCGGW	2 cut(s)	496, 892
Bsc4I	CCNNNNNNNGG	4 cut(s)	496, 662, 920, 974
Bse118I	RCCGGY	2 cut(s)	79, 742
Bse1I	ACTGG	3 cut(s)	227, 581, 591
Bse3DI	GCAATG	3 cut(s)	83, 194, 317
BseAI	TCCGGA	1 cut(s)	892
BseBI	CCWGG	3 cut(s)	663, 975, 1118
BseDI	CCNNGG	3 cut(s)	14, 838, 918
BseGI	GGATG	1 cut(s)	806
BseLI	CCNNNNNNNGG	4 cut(s)	496, 662, 920, 974
BseMI	GCAATG	3 cut(s)	83, 194, 317
BseMII	CTCAG	1 cut(s)	1032
BseNI	ACTGG	3 cut(s)	227, 581, 591
BseRI	GAGGAG	6 cut(s)	252, 255, 390, 504, 824, 827
BseXI	GCAGC	4 cut(s)	19, 417, 791, 794
BshFI	GGCC	5 cut(s)	587, 617, 746, 789, 1066
BsiSI	CCGG	4 cut(s)	80, 497, 743, 893
BslI	CCNNNNNNNGG	4 cut(s)	496, 662, 920, 974
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	587, 617, 746, 789, 1066
Bso31I	GGTCTC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	892
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	714
BspANI	GGCC	5 cut(s)	587, 617, 746, 789, 1066
BspCNI	CTCAG	1 cut(s)	1033
BspEI	TCCGGA	1 cut(s)	892
BspPI	GGATC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	24
BsrDI	GCAATG	3 cut(s)	83, 194, 317
BsrFI	RCCGGY	2 cut(s)	79, 742
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	3 cut(s)	227, 581, 591
BssAI	RCCGGY	2 cut(s)	79, 742
BssECI	CCNNGG	3 cut(s)	14, 838, 918
BssMI	GATC	1 cut(s)	714
BssNI	GRCGYC	1 cut(s)	978
BssT1I	CCWWGG	1 cut(s)	918
Bst2UI	CCWGG	3 cut(s)	663, 975, 1118
Bst4CI	ACNGT	2 cut(s)	69, 732
BstACI	GRCGYC	1 cut(s)	978
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	744, 787, 1036
BstDEI	CTNAG	1 cut(s)	1041
BstDSI	CCRYGG	1 cut(s)	14
BstEII	GGTNACC	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	548, 1026
BstKTI	GATC	1 cut(s)	717
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	714
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 634
BstNI	CCWGG	3 cut(s)	663, 975, 1118
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	661, 973, 1116
BstV1I	GCAGC	4 cut(s)	19, 417, 791, 794
BstV2I	GAAGAC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	5 cut(s)	587, 617, 746, 789, 1066
BtgI	CCRYGG	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	806
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	744, 787, 1036
CfoI	GCGC	2 cut(s)	548, 1026
Cfr10I	RCCGGY	2 cut(s)	79, 742
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	967
Csp6I	GTAC	3 cut(s)	164, 848, 1111
CviAII	CATG	1 cut(s)	983
CviQI	GTAC	3 cut(s)	164, 848, 1111
DdeI	CTNAG	1 cut(s)	1041
DpnI	GATC	1 cut(s)	716
DpnII	GATC	1 cut(s)	714
EaeI	YGGCCR	3 cut(s)	585, 615, 744
EciI	GGCGGA	2 cut(s)	276, 414
Eco130I	CCWWGG	1 cut(s)	918
Eco147I	AGGCCT	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	3 cut(s)	661, 973, 1116
EcoT14I	CCWWGG	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	1 cut(s)	986
FaiI	YATR	5 cut(s)	391, 906, 939, 984, 1097
FatI	CATG	1 cut(s)	982
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	33, 89, 428, 431, 780, 783, 1032
FokI	GGATG	1 cut(s)	813
Fsp4HI	GCNGC	7 cut(s)	33, 89, 428, 431, 780, 783, 1032
FspBI	CTAG	2 cut(s)	141, 639
GlaI	GCGC	2 cut(s)	547, 1025
GluI	GCNGC	7 cut(s)	33, 89, 428, 431, 780, 783, 1032
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	5 cut(s)	587, 617, 746, 789, 1066
HapII	CCGG	4 cut(s)	80, 497, 743, 893
HgaI	GACGC	1 cut(s)	967
HhaI	GCGC	2 cut(s)	548, 1026
Hin1I	GRCGYC	1 cut(s)	978
Hin1II	CATG	1 cut(s)	986
Hin6I	GCGC	2 cut(s)	546, 1024
HinP1I	GCGC	2 cut(s)	546, 1024
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	4 cut(s)	80, 497, 743, 893
HphI	GGTGA	7 cut(s)	37, 183, 223, 351, 511, 714, 720
Hpy166II	GTNNAC	3 cut(s)	166, 483, 1101
Hpy188I	TCNGA	5 cut(s)	559, 762, 842, 1042, 1062
Hpy188III	TCNNGA	2 cut(s)	327, 893
Hpy8I	GTNNAC	3 cut(s)	166, 483, 1101
HpyAV	CCTTC	7 cut(s)	36, 282, 306, 342, 642, 1081, 1119
HpyCH4III	ACNGT	2 cut(s)	69, 732
HpyCH4V	TGCA	2 cut(s)	754, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 634
HpyF3I	CTNAG	1 cut(s)	1041
Hsp92I	GRCGYC	1 cut(s)	978
Hsp92II	CATG	1 cut(s)	986
HspAI	GCGC	2 cut(s)	546, 1024
Kpn2I	TCCGGA	1 cut(s)	892
KroI	GCCGGC	1 cut(s)	742
KroNI	GCCGGC	1 cut(s)	744
Kzo9I	GATC	1 cut(s)	714
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	4 cut(s)	19, 417, 791, 794
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	2 cut(s)	141, 639
MaeIII	GTNAC	7 cut(s)	43, 69, 229, 253, 499, 649, 673
MalI	GATC	1 cut(s)	716
MboI	GATC	1 cut(s)	714
MboII	GAAGA	2 cut(s)	137, 908
MlsI	TGGCCA	2 cut(s)	587, 617
MluCI	AATT	1 cut(s)	843
MluNI	TGGCCA	2 cut(s)	587, 617
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	3 cut(s)	235, 476, 793
Mox20I	TGGCCA	2 cut(s)	587, 617
MroI	TCCGGA	1 cut(s)	892
MroNI	GCCGGC	1 cut(s)	742
MscI	TGGCCA	2 cut(s)	587, 617
MslI	CAYNNNNRTG	2 cut(s)	13, 960
Msp20I	TGGCCA	2 cut(s)	587, 617
MspA1I	CMGCKG	2 cut(s)	430, 1034
MspI	CCGG	4 cut(s)	80, 497, 743, 893
MspR9I	CCNGG	3 cut(s)	663, 975, 1118
MvaI	CCWGG	3 cut(s)	663, 975, 1118
MwoI	GCNNNNNNNGC	2 cut(s)	97, 634
NaeI	GCCGGC	1 cut(s)	744
NdeII	GATC	1 cut(s)	714
NgoMIV	GCCGGC	1 cut(s)	742
NlaIII	CATG	1 cut(s)	986
NmuCI	GTSAC	5 cut(s)	43, 69, 229, 253, 499
OliI	CACNNNNGTG	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	789
PdiI	GCCGGC	1 cut(s)	744
PkrI	GCNGC	7 cut(s)	34, 90, 429, 432, 781, 784, 1033
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	661, 973, 1116
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	3 cut(s)	661, 973, 1116
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	3 cut(s)	165, 849, 1112
RsaNI	GTAC	3 cut(s)	164, 848, 1111
RseI	CAYNNNNRTG	2 cut(s)	13, 960
SatI	GCNGC	7 cut(s)	33, 89, 428, 431, 780, 783, 1032
Sau3AI	GATC	1 cut(s)	714
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	1112
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	663, 975, 1118
SfaNI	GCATC	1 cut(s)	931
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	13, 960
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	1 cut(s)	843
SseBI	AGGCCT	1 cut(s)	789
SspMI	CTAG	2 cut(s)	141, 639
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	661, 973, 1116
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	2 cut(s)	69, 732
TasI	AATT	1 cut(s)	843
TatI	WGTACW	3 cut(s)	163, 847, 1110
TauI	GCSGC	3 cut(s)	91, 430, 1034
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	5 cut(s)	43, 69, 229, 253, 499
TseI	GCWGC	4 cut(s)	32, 430, 779, 782
Tsp45I	GTSAC	5 cut(s)	43, 69, 229, 253, 499
TspRI	CASTG	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	208
XspI	CTAG	2 cut(s)	141, 639
ZrmI	AGTACT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.