Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0024707

Physical Location & Seq

Genomic Coordinates Reverse (-)

24573585 .. 24576855

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCTAAGGTAAAGACTAATCGAGTCAACTACCCAGAAGGTTGGGAACTAATCGAGCCTACTCTTCGTGAACTGCAAGCAAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAAACCTTATGGCCTATTTTCAAAATAGCACATCAAAAGAGCCGCTACATTTTTGACCTTTACCATCGGAGAAAAGAAATTTCCAAGGAATTGTATGAGTTCTGCCTGGACCAAGGTTATGCTGACCGCAATCTAATTGCTAAGTGGAAGAAGGTTTGTCTCAGAATCTCTTTTATTTTAATCTTATACTATTATGCAAAATTTGCTTTGGTTTTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

116

Amino Acids

14.1

Weight (kDa)

9.36

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	1 - 95	8e-38	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024707)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g25490
rosa_samantha	Rh6BG152900 Rh6CG148800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	172, 256
AcsI	RAATTY	2 cut(s)	207, 329
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	207, 329
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	6
BccI	CCATC	2 cut(s)	107, 201
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	213, 241
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	213, 241
BseMII	CTCAG	2 cut(s)	87, 304
BshFI	GGCC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	172, 256
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	88, 303
BspHI	TCATGA	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	213, 241
BssT1I	CCWWGG	2 cut(s)	213, 241
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	6, 96, 270, 290
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	58, 95, 142, 171
CviKI_1	RGCY	4 cut(s)	58, 95, 142, 171
DdeI	CTNAG	4 cut(s)	6, 96, 270, 290
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	213, 241
Eco47I	GGWCC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	213, 241
ErhI	CCWWGG	2 cut(s)	213, 241
FaeI	CATG	1 cut(s)	113
FaiI	YATR	6 cut(s)	111, 139, 225, 249, 316, 324
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	24, 294
Hpy166II	GTNNAC	2 cut(s)	28, 71
Hpy188I	TCNGA	2 cut(s)	198, 293
Hpy188III	TCNNGA	2 cut(s)	68, 110
Hpy8I	GTNNAC	2 cut(s)	28, 71
HpyAV	CCTTC	2 cut(s)	32, 274
HpyCH4V	TGCA	2 cut(s)	76, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	4 cut(s)	6, 96, 270, 290
Hsp92II	CATG	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	48, 221, 248
MboII	GAAGA	2 cut(s)	56, 289
MluCI	AATT	4 cut(s)	207, 218, 264, 329
MlyI	GAGTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	7 cut(s)	12, 43, 97, 137, 189, 247, 285
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	4 cut(s)	207, 218, 264, 329
SsiI	CCGC	2 cut(s)	172, 256
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	213, 241
TaqI	TCGA	2 cut(s)	22, 54
TasI	AATT	4 cut(s)	207, 218, 264, 329
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	2 cut(s)	207, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.