Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0024707

Physical Location & Seq

Genomic Coordinates Reverse (-)

19404487 .. 19407057

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG148800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTTGCCACTGATGACAGGTAAAAAAATGCCTAAGGTCAAGACTAATCGAGTCAACTACCCAGAAGGTTGGGAACTAATCGAGCCTACTCTTCGCGAACTGCAAGCAAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAAACCTTATGGCCTATTTTCAAAATAGCACATCAAAAGAGCCGCTACATTTTTGACCTTTACCATCGGAGAAAAGAAATTTCCAAGGAATTGTATGAGTTCTGCCTGGACCAAGGTTATGCTGACCGCAATCTAATTGCAAAGTGGAAGAAGGTTTGTCTCAGAATCTCTTTTATTGTAATCTTATACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

116

Amino Acids

14.07

Weight (kDa)

9.47

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	10 - 104	8e-38	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024707)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g25490
rosa_samantha	Rh6BG152900 Rh6CG148800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	199, 283
AcsI	RAATTY	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	33
BccI	CCATC	2 cut(s)	134, 228
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	240, 268
Bse21I	CCTNAGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	240, 268
BseMII	CTCAG	2 cut(s)	114, 331
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	169
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	2 cut(s)	199, 283
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	115, 330
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	240, 268
BssT1I	CCWWGG	2 cut(s)	240, 268
Bst2UI	CCWGG	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	33, 123, 317
BstFNI	CGCG	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	8
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	85, 122, 169, 198
CviKI_1	RGCY	4 cut(s)	85, 122, 169, 198
DdeI	CTNAG	3 cut(s)	33, 123, 317
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	240, 268
Eco47I	GGWCC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	240, 268
ErhI	CCWWGG	2 cut(s)	240, 268
FaeI	CATG	1 cut(s)	140
FaiI	YATR	5 cut(s)	138, 166, 252, 276, 343
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	51, 321
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	225, 320
Hpy188III	TCNNGA	3 cut(s)	40, 95, 137
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	59, 301
HpyCH4V	TGCA	2 cut(s)	103, 296
HpyF3I	CTNAG	3 cut(s)	33, 123, 317
Hsp92II	CATG	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	3, 75, 248, 275
MboII	GAAGA	2 cut(s)	83, 316
MluCI	AATT	3 cut(s)	234, 245, 291
MlyI	GAGTC	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	96
NlaIII	CATG	1 cut(s)	140
NruI	TCGCGA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	265
RruI	TCGCGA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	8 cut(s)	22, 39, 70, 124, 164, 216, 274, 312
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	234, 245, 291
SsiI	CCGC	2 cut(s)	199, 283
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	240, 268
TaqI	TCGA	2 cut(s)	49, 81
TasI	AATT	3 cut(s)	234, 245, 291
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.