Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003900

Physical Location & Seq

Genomic Coordinates Reverse (-)

67858321 .. 67864962

Gene Structure 6642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG470700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGGGGCGGTTTGCTCGGCTGGGTTTAGTGATGAAGGTGCTAAGAATTTGGGGTTTTCCGGGAAGCTCAAGTCGAGTGTGAATAAGATGAAAGATAATTTTTCATTCTCCGATGATATTGACGCCCTGAGAACGCCGCACAAGTACGATTCCGGCGAGCTGCGATCGTCGTTTTCGAGCGAGTTGAAGCCGTCAACTCCTGCTCGGAATGGAGCCGCCAAGATTTCGCAGAGGAACTCATTTATAGGCAGAGCTGGAACTGCAGGCCTGGAGAAGGCAGTAGGAGTTTTGGATACACTAGGCAGCAGTGTGTCGAATTTGCAAAGCAATAGCGGATTTCTTACTGGGGGTTCTAGAGGCAATAGAATATCTATACTATCATTTGAAGTAGCTAATACAATCGCCAAGGGCGCAAACTTGTTGCAATCGCTTTCCGAAAAGAATATCCAGTTCCTCAAGGGAGAGGTTCTGCATTCTCAAGGTGTACAAAACTTGGTGTCCAAAGATATGAGGGAGTTGCTAAGTATTGCTGCTGCTGACAAAAGGGAAGAACTTGATCTTTTCTCACGGGAAGTAATTAGGTTCGGCAACCAGTGTAAAGACCCACAATGGCATAACCTGAGTCGATATTTCTCAAGATTAGATTCTGATGATCCAAGTCACAAACAGCTAAGATCAGAAGCCGAAATGACAATGCAGGAATTGACCACTCTTGGTCAGCATACTTCTGAATTATACCATGAGTTGAGTGCTTTGGACAGATTTGAACAAGATTACAAGAGAAAGCTCGAGGAAGCTAAGGCCTTGCATCTCCCTCTTAGAGGAGAAAGTCTGACAATGTTACAAAGTGAATTAAAACAACAAAGAAAGCTTGTGAGGACCTTGAAAAAGAAATCTCTTTGGGCCAAAAATTTAGATGAGATAGTGGAGAAACTTGTAGATATTGTTGCTTATACCCATCAAGCAATCTTGGAAGCATTTGGTGATAATGGTGTAACTCTTGTGAAAGGGGAGAAGGGTAAAAATCCTCAAAGACTAGGCGCAGCTGGTCTTGCATTACACTATGCCAATATGATAAACCAGATAGATAACATTGCGTCTCGACCAACCTCTCTTCCCCCAAATACAAGGGACAACTTATATCATGGGTTGCCAGATAGTGTTAAGAAAGCTTTACGATCCCGATTGCAAATTCTTGATGCCAAGGAAGAGCTCATGGTTTCTCAGGTCAAAGCTGAAATGGAAAAGACTCTCCACTGGCTTGTTCCTGTTGCCTCAAATACGAACAAAGCTCATCAAGGTTTTGGGTGGGTGGGAGAATGGGCAAACTCTGGGTCAGTCAAGCCGCTCACTTTCTCTGAATTTCATTTAGATGGACAAGATGCATCATTTTATATCAATGTACATGATTATTTATTTATTTTTACTGAAAATATTTCTGATGTTAGCTTTCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

486

Amino Acids

53.94

Weight (kDa)

7.78

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	125 - 181	3.4e-24	Domain of unknown function (DUF3475)
DUF668	PF05003	345 - 430	6.6e-31	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30755 AT1G30755 AT1G30755 AT1G30755 AT1G30755 AT1G30755
fragaria_vesca	FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360 FvH4_2g38360
malus_domestica	MD08G1012300.v1.1 MD15G1011300.v1.1
prunus_persica	Prupe.1G364500_v2.0.a1 Prupe.1G364500_v2.0.a1 Prupe.1G364500_v2.0.a1
pyrus_communis	pycom08g01070 pycom15g01010
rosa_chinensis	RchiOBHm_Chr6g0302951
rosa_laevigata	RLG00000011122
rosa_multiflora	Rmu_ssc0000460.1_g000021
rosa_roxburghii	Rroxscaffold_7G00165140
rosa_rugosa	Rorug06G0318300
rosa_samantha	Rh6AG431900 Rh6BG470700 Rh6CG444400 Rh6DG431100
rosa_wichuraiana	Rw6G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1348
AciI	CCGC	5 cut(s)	8, 137, 216, 333, 1346
AclWI	GGATC	2 cut(s)	647, 1173
AcsI	RAATTY	5 cut(s)	46, 316, 910, 1191, 1361
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	3 cut(s)	146, 486, 1404
AfiI	CCNNNNNNNGG	2 cut(s)	274, 821
AgsI	TTSAA	4 cut(s)	187, 386, 767, 886
AjnI	CCWGG	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	1215
Alw26I	GTCTC	1 cut(s)	1104
AlwI	GGATC	2 cut(s)	647, 1173
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	265, 801, 903
ApeKI	GCWGC	5 cut(s)	160, 303, 530, 533, 1043
ApoI	RAATTY	5 cut(s)	46, 316, 910, 1191, 1361
ArsI	GACNNNNNNTTYG	2 cut(s)	1319, 1351
AspLEI	GCGC	2 cut(s)	413, 1043
AspS9I	GGNCC	2 cut(s)	879, 903
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	995
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	1215
Bbv12I	GWGCWC	1 cut(s)	1215
BbvI	GCAGC	5 cut(s)	147, 315, 517, 520, 1055
BccI	CCATC	2 cut(s)	966, 1367
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	3 cut(s)	299, 354, 1037
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	8 cut(s)	137, 161, 216, 304, 531, 534, 1044, 1346
BlsI	GCNGC	8 cut(s)	138, 162, 217, 305, 532, 535, 1045, 1347
Bme1390I	CCNGG	2 cut(s)	61, 269
Bme18I	GGWCC	1 cut(s)	879
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	879, 903
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	61, 269
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	4 cut(s)	817, 1189, 1372, 1394
BmuI	ACTGGG	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	4 cut(s)	53, 440, 462, 619
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	405, 1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 821
Bse1I	ACTGG	4 cut(s)	349, 448, 592, 1262
Bse3DI	GCAATG	1 cut(s)	1092
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	405, 1203
BseLI	CCNNNNNNNGG	2 cut(s)	274, 821
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	3 cut(s)	119, 611, 1238
BseNI	ACTGG	4 cut(s)	349, 448, 592, 1262
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	5 cut(s)	147, 315, 517, 520, 1055
BseYI	CCCAGC	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	267, 803, 905
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	1215
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	60, 153
BslFI	GGGAC	1 cut(s)	1145
BslI	CCNNNNNNNGG	2 cut(s)	274, 821
BsmAI	GTCTC	1 cut(s)	1104
BsmBI	CGTCTC	1 cut(s)	1104
BsmFI	GGGAC	1 cut(s)	1145
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	267, 803, 905
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp1407I	TGTACA	2 cut(s)	484, 1402
Bsp143I	GATC	5 cut(s)	164, 556, 652, 674, 1178
BspACI	CCGC	5 cut(s)	8, 137, 216, 333, 1346
BspANI	GGCC	3 cut(s)	267, 803, 905
BspCNI	CTCAG	3 cut(s)	120, 612, 1237
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	647, 1173
BspQI	GCTCTTC	1 cut(s)	1203
BsrBI	CCGCTC	1 cut(s)	1348
BsrDI	GCAATG	1 cut(s)	1092
BsrGI	TGTACA	2 cut(s)	484, 1402
BsrI	ACTGG	4 cut(s)	349, 448, 592, 1262
BssECI	CCNNGG	2 cut(s)	405, 1203
BssMI	GATC	5 cut(s)	164, 556, 652, 674, 1178
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	405, 1203
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	1119, 1203
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	2 cut(s)	484, 1402
BstC8I	GCNNGC	2 cut(s)	158, 265
BstDEI	CTNAG	8 cut(s)	42, 128, 521, 620, 671, 798, 818, 1224
BstENI	CCTNNNNNAGG	2 cut(s)	272, 819
BstHHI	GCGC	2 cut(s)	413, 1043
BstKTI	GATC	5 cut(s)	167, 559, 655, 677, 1181
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	5 cut(s)	164, 556, 652, 674, 1178
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 410, 1052
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	59, 267
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	147, 315, 517, 520, 1055
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	267, 803, 905
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	313, 599, 1255
Cac8I	GCNNGC	2 cut(s)	158, 265
CfoI	GCGC	2 cut(s)	413, 1043
Cfr13I	GGNCC	2 cut(s)	879, 903
CseI	GACGC	2 cut(s)	131, 1086
Csp6I	GTAC	3 cut(s)	145, 485, 1403
CviAII	CATG	4 cut(s)	740, 1145, 1216, 1406
CviQI	GTAC	3 cut(s)	145, 485, 1403
DdeI	CTNAG	8 cut(s)	42, 128, 521, 620, 671, 798, 818, 1224
DpnI	GATC	5 cut(s)	166, 558, 654, 676, 1180
DpnII	GATC	5 cut(s)	164, 556, 652, 674, 1178
Eam1104I	CTCTTC	2 cut(s)	1119, 1203
EarI	CTCTTC	2 cut(s)	1119, 1203
Ecl136II	GAGCTC	1 cut(s)	1213
Eco130I	CCWWGG	2 cut(s)	405, 1203
Eco147I	AGGCCT	2 cut(s)	267, 803
Eco24I	GRGCYC	1 cut(s)	1215
Eco47I	GGWCC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	1213
Eco88I	CYCGRG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	1213
EcoNI	CCTNNNNNAGG	2 cut(s)	272, 819
EcoO109I	RGGNCCY	1 cut(s)	879
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	405, 1203
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	1 cut(s)	1215
ErhI	CCWWGG	2 cut(s)	405, 1203
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	4 cut(s)	743, 1148, 1219, 1409
FaqI	GGGAC	1 cut(s)	1145
FatI	CATG	4 cut(s)	739, 1144, 1215, 1405
Fnu4HI	GCNGC	8 cut(s)	137, 161, 216, 304, 531, 534, 1044, 1346
FriOI	GRGCYC	1 cut(s)	1215
Fsp4HI	GCNGC	8 cut(s)	137, 161, 216, 304, 531, 534, 1044, 1346
FspBI	CTAG	3 cut(s)	299, 354, 1037
GlaI	GCGC	2 cut(s)	412, 1042
GluI	GCNGC	8 cut(s)	137, 161, 216, 304, 531, 534, 1044, 1346
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	267, 803, 905
HapII	CCGG	2 cut(s)	60, 153
HgaI	GACGC	2 cut(s)	131, 1086
HhaI	GCGC	2 cut(s)	413, 1043
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	743, 1148, 1219, 1409
Hin6I	GCGC	2 cut(s)	411, 1041
HinP1I	GCGC	2 cut(s)	411, 1041
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	2 cut(s)	869, 1170
HinfI	GANTC	4 cut(s)	149, 622, 644, 1249
HpaII	CCGG	2 cut(s)	60, 153
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	2 cut(s)	195, 485
Hpy188I	TCNGA	9 cut(s)	112, 207, 436, 649, 679, 730, 834, 1360, 1441
Hpy188III	TCNNGA	5 cut(s)	354, 636, 1101, 1182, 1196
Hpy8I	GTNNAC	2 cut(s)	195, 485
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	29, 268, 1009
HpyCH4V	TGCA	9 cut(s)	263, 322, 424, 472, 697, 808, 1055, 1189, 1385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 410, 1052
HpyF3I	CTNAG	8 cut(s)	42, 128, 521, 620, 671, 798, 818, 1224
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	743, 1148, 1219, 1409
HspAI	GCGC	2 cut(s)	411, 1041
Kzo9I	GATC	5 cut(s)	164, 556, 652, 674, 1178
LguI	GCTCTTC	1 cut(s)	1203
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	5 cut(s)	147, 315, 517, 520, 1055
LweI	GCATC	4 cut(s)	817, 1189, 1372, 1394
MaeI	CTAG	3 cut(s)	299, 354, 1037
MaeIII	GTNAC	3 cut(s)	659, 840, 994
MalI	GATC	5 cut(s)	166, 558, 654, 676, 1180
MbiI	CCGCTC	1 cut(s)	1348
MboI	GATC	5 cut(s)	164, 556, 652, 674, 1178
MboII	GAAGA	3 cut(s)	560, 1106, 1220
MhlI	GDGCHC	1 cut(s)	1215
MlyI	GAGTC	2 cut(s)	631, 1243
Mph1103I	ATGCAT	1 cut(s)	1387
MseI	TTAA	2 cut(s)	854, 1164
MslI	CAYNNNNRTG	1 cut(s)	1371
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	2 cut(s)	60, 153
MspR9I	CCNGG	2 cut(s)	61, 269
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	260, 410, 1052
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	5 cut(s)	164, 556, 652, 674, 1178
NlaIII	CATG	4 cut(s)	743, 1148, 1219, 1409
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	1387
PaeR7I	CTCGAG	1 cut(s)	788
PceI	AGGCCT	2 cut(s)	267, 803
PciSI	GCTCTTC	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 173
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	149, 644
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	8 cut(s)	138, 162, 217, 305, 532, 535, 1045, 1347
Ple19I	CGATCG	1 cut(s)	167
PleI	GAGTC	2 cut(s)	630, 1243
PpsI	GAGTC	2 cut(s)	630, 1243
PpuMI	RGGWCCY	1 cut(s)	879
Psp124BI	GAGCTC	1 cut(s)	1215
Psp5II	RGGWCCY	1 cut(s)	879
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	879, 903
PspPPI	RGGWCCY	1 cut(s)	879
PspXI	VCTCGAGB	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	3 cut(s)	146, 486, 1404
RsaNI	GTAC	3 cut(s)	145, 485, 1403
RseI	CAYNNNNRTG	1 cut(s)	1371
SacI	GAGCTC	1 cut(s)	1215
SapI	GCTCTTC	1 cut(s)	1203
SaqAI	TTAA	2 cut(s)	854, 1164
SatI	GCNGC	8 cut(s)	137, 161, 216, 304, 531, 534, 1044, 1346
Sau3AI	GATC	5 cut(s)	164, 556, 652, 674, 1178
Sau96I	GGNCC	2 cut(s)	879, 903
SchI	GAGTC	2 cut(s)	631, 1243
ScrFI	CCNGG	2 cut(s)	61, 269
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	4 cut(s)	817, 1189, 1372, 1394
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	788
SinI	GGWCC	1 cut(s)	879
SlaI	CTCGAG	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SmlI	CTYRAG	5 cut(s)	68, 455, 477, 634, 788
SmoI	CTYRAG	5 cut(s)	68, 455, 477, 634, 788
SseBI	AGGCCT	2 cut(s)	267, 803
SsiI	CCGC	5 cut(s)	8, 137, 216, 333, 1346
SspI	AATATT	1 cut(s)	1435
SspMI	CTAG	3 cut(s)	299, 354, 1037
SstI	GAGCTC	1 cut(s)	1215
StuI	AGGCCT	2 cut(s)	267, 803
StyD4I	CCNGG	2 cut(s)	59, 267
StyI	CCWWGG	2 cut(s)	405, 1203
TaqI	TCGA	6 cut(s)	74, 176, 314, 625, 789, 1102
TatI	WGTACW	2 cut(s)	484, 1402
TauI	GCSGC	3 cut(s)	139, 218, 1348
TfiI	GAWTC	2 cut(s)	149, 644
Tru1I	TTAA	2 cut(s)	854, 1164
Tru9I	TTAA	2 cut(s)	854, 1164
TscAI	CASTG	3 cut(s)	313, 599, 1262
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	5 cut(s)	160, 303, 530, 533, 1043
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	48, 93, 104, 1355
TspRI	CASTG	3 cut(s)	313, 599, 1262
VpaK11BI	GGWCC	1 cut(s)	879
XagI	CCTNNNNNAGG	2 cut(s)	272, 819
XapI	RAATTY	5 cut(s)	46, 316, 910, 1191, 1361
XbaI	TCTAGA	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	788
XspI	CTAG	3 cut(s)	299, 354, 1037
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.