Rh6CG020500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
1932154 .. 1933036
883 bp
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UTR
Exon/CDS
Intron
Rh6CG020500.1

Sequence Viewer

Length: 204 bp
ATGCACAAAGCTTCCACAGATGAAGGAACACCTAGCTTTTCCAGTGGGAAACCTTCTTGTGATGGAATCAGTTTCCTTCCGAAACAATGCATGCTGTTCTTCCGTCGTGCTCTACTCTCACTAAAGCTCAAACATTTTTTAATCCTTGTTGCTGAAGCTGTACCGAGATGGCAGGACAAGGCATTGATCTCCAGAACAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.54

Weight (kDa)

9.78

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025080)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0244951
rosa_samantha Rh6CG020500
rosa_wichuraiana Rw6G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 162
AluBI AGCT 4 cut(s) 11, 36, 127, 158
AluI AGCT 4 cut(s) 11, 36, 127, 158
Alw21I GWGCWC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 2 cut(s) 56, 162
BfaI CTAG 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 42
BssMI GATC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 11, 36, 127, 158
CviKI_1 RGCY 4 cut(s) 11, 36, 127, 158
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 92
FaeI CATG 1 cut(s) 94
FaiI YATR 1 cut(s) 92
FatI CATG 1 cut(s) 90
FspBI CTAG 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 175
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 192
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 17, 63, 86
HpyCH4V TGCA 2 cut(s) 4, 90
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 2 cut(s) 55, 158
MaeI CTAG 1 cut(s) 33
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 92
MseI TTAA 1 cut(s) 140
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 66
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 13, 34, 38, 55, 129, 160
SgeI CNNG 9 cut(s) 45, 54, 69, 103, 119, 158, 177, 185, 190
SphI GCATGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 33
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 94
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.