Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0022506

Physical Location & Seq

Genomic Coordinates Reverse (-)

35385906 .. 35386906

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACTCGGTTCGTGCTGAATGAGCAGTCCAAGCACCCTGAGTCACGAGGAGACTTCACGATCTTGCTCAGTCATATTGTTCTTGGCTGCAAGTTTGTGTGCTCTGCTGTTAATAAGGCTGGTCTGGCTAAACTTATTGGCCTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTGCTTTCAAATGAAGTTTTTGTGAAGGCTCTGGTTAGCAGTGGTCGAACTGTAAGTTATTACATTTTTTGTTTAAGAAATCAGAAAAGCTGGGTTTTTGAGGGCCAATATTCTGTTTACATTTTGGGGGTTTTTCTTGGCAGTGCATCCTTGTTTCGGAGGAAGATGAAGATGCCATATTTGTGGAGTCATCAAAGCGCGGAAAGTACTGTGTTGTCTTTGATCCATTGGATGGTTCGTCTAACATTGATTGTGGGGTTTCCATCGGCACGATATTTGGGATTTATGTGCTTAACGAAGGCAAGGAAGCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

168

Amino Acids

18.98

Weight (kDa)

9.76

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	1 - 81	9e-28	Fructose-1-6-bisphosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0022506)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G560800_v2.0.a1
rosa_multiflora	Rmu_sc0011044.1_g000003
rosa_samantha	Rh6CG213200
rosa_wichuraiana	Rw6G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccII	CGCG	1 cut(s)	389
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	406
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	345, 421
AgsI	TTSAA	1 cut(s)	198
AluBI	AGCT	2 cut(s)	279, 499
AluI	AGCT	2 cut(s)	279, 499
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	45, 146
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	2 cut(s)	139, 292
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	179
BauI	CACGAG	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	415, 460
BcoDI	GTCTC	2 cut(s)	45, 146
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmcAI	AGTACT	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	292
BmsI	GCATC	2 cut(s)	344, 351
BpmI	CTGGAG	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 421
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	193, 335, 426
BseLI	CCNNNNNNNGG	2 cut(s)	345, 421
BseMII	CTCAG	2 cut(s)	30, 82
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	141, 294
BsiHKAI	GWGCWC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	345, 421
BsmAI	GTCTC	2 cut(s)	45, 146
BsnI	GGCC	2 cut(s)	141, 294
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	60, 411
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	141, 294
BspCNI	CTCAG	2 cut(s)	31, 81
BspFNI	CGCG	1 cut(s)	389
BspPI	GGATC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	60, 411
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	241, 400
Bst6I	CTCTTC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	39, 68
BstF5I	GGATG	3 cut(s)	193, 335, 426
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	2 cut(s)	63, 414
BstMAI	GTCTC	2 cut(s)	45, 146
BstMBI	GATC	2 cut(s)	60, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 31, 125
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	141, 294
BtsCI	GGATG	3 cut(s)	193, 335, 426
BtsI	GCAGTG	2 cut(s)	235, 337
BtsIMutI	CAGTG	2 cut(s)	235, 337
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	396
CviJI	RGCY	8 cut(s)	87, 119, 128, 141, 218, 279, 294, 499
CviKI_1	RGCY	8 cut(s)	87, 119, 128, 141, 218, 279, 294, 499
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	39, 68
DpnI	GATC	2 cut(s)	62, 413
DpnII	GATC	2 cut(s)	60, 411
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	146
FaiI	YATR	3 cut(s)	75, 367, 476
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	3 cut(s)	200, 322, 433
Fsp4HI	GCNGC	1 cut(s)	88
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	88
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	141, 294
HhaI	GCGC	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	4, 41, 376
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	273, 348
Hpy188III	TCNNGA	2 cut(s)	45, 58
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	208, 481
HpyCH4III	ACNGT	2 cut(s)	241, 400
HpyCH4V	TGCA	2 cut(s)	90, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 31, 125
HpyF3I	CTNAG	2 cut(s)	39, 68
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	60, 411
LguI	GCTCTTC	1 cut(s)	165
LpnPI	CCDG	8 cut(s)	51, 105, 110, 132, 149, 170, 206, 265
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	344, 351
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	62, 413
MboI	GATC	2 cut(s)	60, 411
MboII	GAAGA	3 cut(s)	182, 364, 370
MhlI	GDGCHC	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	50, 385
MnlI	CCTC	3 cut(s)	41, 283, 342
MseI	TTAA	3 cut(s)	111, 263, 482
MslI	CAYNNNNRTG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	22, 31, 125
NdeII	GATC	2 cut(s)	60, 411
NmuCI	GTSAC	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	49, 384
PpsI	GAGTC	2 cut(s)	49, 384
PspFI	CCCAGC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	111, 263, 482
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	60, 411
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	2 cut(s)	50, 385
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	2 cut(s)	281, 501
SfaNI	GCATC	2 cut(s)	344, 351
SmiMI	CAYNNNNRTG	1 cut(s)	370
SsiI	CCGC	1 cut(s)	389
SspI	AATATT	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	241, 400
TaqI	TCGA	1 cut(s)	235
TatI	WGTACW	1 cut(s)	395
Tru1I	TTAA	3 cut(s)	111, 263, 482
Tru9I	TTAA	3 cut(s)	111, 263, 482
TscAI	CASTG	2 cut(s)	235, 337
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	216, 371
TspRI	CASTG	2 cut(s)	235, 337
Van91I	CCANNNNNTGG	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.