Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0022506

Physical Location & Seq

Genomic Coordinates Reverse (-)

35806492 .. 35808943

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATCATGAAGCTGATGCCTACCGTACTGACTTGATGACCATGACTCGGTTCGTGCTGAATGAGCAGTCCAAGTACCCTGAGTCGCGCGGAGATTTCACCATCTTGCTCAGTCATATTGTTCTTGGATGCAAGTTTGTGTGCTCTGCTGTTAATAAGGCTGGTCTGGCTAAACTTATTGGCCTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTGCTTTCAAATGAAGTTTTTGTGAAGGCTCTGGTTAGCAGTGGTCGAACTTGTATCCTTGTTTCGGAGGAAGATGAAGATGCCATATTTGTGGAGTCATCAAAGCGCGGAAAGTACTGTGTTGTGTTTGATCCATTGGATGGTTCGTCTAACATCGATTGTGGGGTTTCCATCGGCACGATATTTGGGATTTATGTGCTTAACGAAGGCAAGGAAGCTTCTCTAGATGATGTCTTGCAGCCTGGAAAGAATATGTTGGCAGCAGGCTATTGCATGTACAGAAGTTCTTGCACGATTCCGAAGAAAGGAAAGATCTATTCTGTGAACGAAGGGAATGCTAAGAACTGGGATGGTCCAACAGCTAAGTATGTGGAGAAACAACATGCAAGGAGCGTGGGTTCATGGGCCACACATTTTCAACAATTGGATGATGAACGATGCAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009251 GO:0009311 GO:0009312 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016051 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0030388 GO:0033993 GO:0034284 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046364 GO:0050308 GO:0050896 GO:0071704 GO:0097305 GO:1901135 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

226

Amino Acids

24.8

Weight (kDa)

5.31

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	13 - 176	1.5e-70	Fructose-1-6-bisphosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022506)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G560800_v2.0.a1
rosa_multiflora	Rmu_sc0011044.1_g000003
rosa_samantha	Rh6CG213200
rosa_wichuraiana	Rw6G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccII	CGCG	3 cut(s)	88, 90, 339
AciI	CCGC	2 cut(s)	90, 339
AclWI	GGATC	2 cut(s)	12, 356
AfaI	GTAC	4 cut(s)	28, 77, 347, 509
AfiI	CCNNNNNNNGG	4 cut(s)	48, 295, 371, 536
AgsI	TTSAA	2 cut(s)	240, 650
AjnI	CCWGG	1 cut(s)	472
AloI	GAACNNNNNNTCC	2 cut(s)	613, 645
AluBI	AGCT	3 cut(s)	14, 449, 593
AluI	AGCT	3 cut(s)	14, 449, 593
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	12, 356
AoxI	GGCC	2 cut(s)	181, 636
ApeKI	GCWGC	2 cut(s)	469, 491
AspLEI	GCGC	2 cut(s)	90, 339
AspS9I	GGNCC	2 cut(s)	584, 636
AsuHPI	GGTGA	2 cut(s)	91, 221
AvaII	GGWCC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	481, 503
BccI	CCATC	4 cut(s)	110, 365, 410, 575
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	2 cut(s)	470, 492
BlsI	GCNGC	2 cut(s)	471, 493
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	584, 636
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	4 cut(s)	7, 119, 301, 659
BmuI	ACTGGG	1 cut(s)	586
BpmI	CTGGAG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 295, 371, 536
Bse1I	ACTGG	2 cut(s)	231, 581
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	387
BseGI	GGATG	5 cut(s)	134, 235, 376, 586, 664
BseLI	CCNNNNNNNGG	4 cut(s)	48, 295, 371, 536
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	72, 124
BseNI	ACTGG	2 cut(s)	231, 581
BseXI	GCAGC	2 cut(s)	481, 503
Bsh1236I	CGCG	3 cut(s)	88, 90, 339
BshFI	GGCC	2 cut(s)	183, 638
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	146
BslI	CCNNNNNNNGG	4 cut(s)	48, 295, 371, 536
BsmAI	GTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	183, 638
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	4, 361, 543
BspACI	CCGC	2 cut(s)	90, 339
BspANI	GGCC	2 cut(s)	183, 638
BspCNI	CTCAG	2 cut(s)	73, 123
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	3 cut(s)	88, 90, 339
BspHI	TCATGA	1 cut(s)	7
BspPI	GGATC	2 cut(s)	12, 356
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	231, 581
BssMI	GATC	3 cut(s)	4, 361, 543
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	26, 350
Bst6I	CTCTTC	1 cut(s)	207
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	4 cut(s)	81, 110, 570, 594
BstF5I	GGATG	5 cut(s)	134, 235, 376, 586, 664
BstFNI	CGCG	3 cut(s)	88, 90, 339
BstHHI	GCGC	2 cut(s)	90, 339
BstKTI	GATC	3 cut(s)	7, 364, 546
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	4, 361, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 167
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	508, 617
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	3 cut(s)	88, 90, 339
BstV1I	GCAGC	2 cut(s)	481, 503
BstX2I	RGATCY	1 cut(s)	543
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	543
Bsu15I	ATCGAT	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	183, 638
BsuTUI	ATCGAT	1 cut(s)	387
BtsCI	GGATG	5 cut(s)	134, 235, 376, 586, 664
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	2 cut(s)	90, 339
Cfr13I	GGNCC	2 cut(s)	584, 636
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	4 cut(s)	27, 76, 346, 508
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	5 cut(s)	8, 43, 505, 614, 633
CviQI	GTAC	4 cut(s)	27, 76, 346, 508
DdeI	CTNAG	4 cut(s)	81, 110, 570, 594
DpnI	GATC	3 cut(s)	6, 363, 545
DpnII	GATC	3 cut(s)	4, 361, 543
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	5 cut(s)	11, 46, 508, 617, 636
FatI	CATG	5 cut(s)	7, 42, 504, 613, 632
Fnu4HI	GCNGC	2 cut(s)	470, 492
FokI	GGATG	5 cut(s)	141, 242, 383, 593, 671
Fsp4HI	GCNGC	2 cut(s)	470, 492
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	2 cut(s)	89, 338
GluI	GCNGC	2 cut(s)	470, 492
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	183, 638
HhaI	GCGC	2 cut(s)	90, 339
Hin1II	CATG	5 cut(s)	11, 46, 508, 617, 636
Hin6I	GCGC	2 cut(s)	88, 337
HinP1I	GCGC	2 cut(s)	88, 337
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	4 cut(s)	46, 83, 326, 526
HphI	GGTGA	2 cut(s)	91, 221
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	298, 531
Hpy188III	TCNNGA	2 cut(s)	8, 455
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	250, 431, 554
HpyCH4III	ACNGT	2 cut(s)	26, 350
HpyCH4V	TGCA	6 cut(s)	132, 469, 504, 522, 617, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 167
HpyF3I	CTNAG	4 cut(s)	81, 110, 570, 594
Hsp92II	CATG	5 cut(s)	11, 46, 508, 617, 636
HspAI	GCGC	2 cut(s)	88, 337
Kzo9I	GATC	3 cut(s)	4, 361, 543
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	621
Lsp1109I	GCAGC	2 cut(s)	481, 503
LweI	GCATC	4 cut(s)	7, 119, 301, 659
MaeI	CTAG	1 cut(s)	455
MalI	GATC	3 cut(s)	6, 363, 545
MboI	GATC	3 cut(s)	4, 361, 543
MboII	GAAGA	4 cut(s)	224, 314, 320, 544
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	653
MlyI	GAGTC	3 cut(s)	40, 92, 335
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	1 cut(s)	292
MseI	TTAA	3 cut(s)	153, 432, 679
MslI	CAYNNNNRTG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	474
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	3 cut(s)	88, 90, 339
MwoI	GCNNNNNNNGC	2 cut(s)	64, 167
NdeII	GATC	3 cut(s)	4, 361, 543
NlaIII	CATG	5 cut(s)	11, 46, 508, 617, 636
NspI	RCATGY	2 cut(s)	508, 617
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	471, 493
PleI	GAGTC	3 cut(s)	40, 91, 334
PpsI	GAGTC	3 cut(s)	40, 91, 334
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	584, 636
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	4 cut(s)	28, 77, 347, 509
RsaNI	GTAC	4 cut(s)	27, 76, 346, 508
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	153, 432, 679
SatI	GCNGC	2 cut(s)	470, 492
Sau3AI	GATC	3 cut(s)	4, 361, 543
Sau96I	GGNCC	2 cut(s)	584, 636
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	3 cut(s)	40, 92, 335
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	3 cut(s)	16, 451, 595
SfaNI	GCATC	4 cut(s)	7, 119, 301, 659
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	653
SsiI	CCGC	2 cut(s)	90, 339
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	2 cut(s)	26, 350
TaqI	TCGA	2 cut(s)	277, 387
TasI	AATT	1 cut(s)	653
TatI	WGTACW	2 cut(s)	345, 507
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	3 cut(s)	153, 432, 679
Tru9I	TTAA	3 cut(s)	153, 432, 679
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	469, 491
TspDTI	ATGAA	5 cut(s)	24, 258, 321, 621, 678
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	584
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	2 cut(s)	508, 617
XspI	CTAG	1 cut(s)	455
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.