Rh6CG281600

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0021460
Physical Location & Seq
Reverse (-)
45930343 .. 45932175
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG281600.1

Sequence Viewer

Length: 939 bp
ATGAAATCCCAAAAGAAAAGGACGGCTATTCTATTAAGGGAGAAAAACTTCACCAGATTATGCGAAACAAAGAGCATGTTTGTTGTAAACGACATTTTCCCAGGACCGGAGATACGAGTTCATAAAGGGGATATGGTCTATGTAAATGTTTATAATCAAGCATATTATGCATCCTGGTACTTAGGAGATTTGAAAGTACGGGTTGATGAGGCTATGAAAGAAGCCACATCTTTACCCCGTTCTGATGCATACACAATAAATGGGCAGCCGGGGGATCTTTTTCCATGCTCCAAGGGGACAGCATATCGTCTAAAAGTGGATTATGCCAAGACCTATCTTCTTCGTATAGTCAATGCAAACATAGATTCATCCCTTTTCTTTGCAGTTGCTCAACACAACCTCACAGTTGTCGGACTAGACGGAGCCTATATCAAACCCATATACACAACCTACATAGTCATAAGCCCTGGACAAACTATGGATGTTTTGCTCAAAACTGATCAGGTTCTCGGGCGCTATTACATGGCTGGTAGACATTTCTCTAGTGATAATGCCAAAGTTTCTCAATTTGGCCATGATGTTACTGCAATCTTGGAATACAATGGCGACTACACTTATCCAACATCACCTCTCTTTCCCAAAACACTTCCTATGTACTCAGACTTTTCAGCAGCATTAAACTTCACTTACCAAATTAAAAGCTTAGCTTCCCCAGAATATCCAATAAATGTCCCACCAGACAATGACATTACTACCAGAATGTTTATAACAGCTTCCATGAATTCACTTTACTGTGAAGATTCAGGCTTCTTGAGCTGCACAGAGATACCAATCGCTACAAGCGTAAATAACATTAGCTGGGTGAACCCGAGGAATACAGATCTCTTGCAAGCTTATTACAGGTTCTCCCAAACACTTTCCCTATATTCTCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

312

Amino Acids

35.3

Weight (kDa)

7.57

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 14 - 54 6e-07 Multicopper oxidase
Cu-oxidase PF00394 57 - 202 6.1e-31 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021460)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284771
rosa_rugosa Rorug06G0166700
rosa_samantha Rh6CG281600 Rh6CG281800 Rh6DG274600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 153, 767
AccI GTMKAC 1 cut(s) 532
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 1 cut(s) 781
AfaI GTAC 3 cut(s) 179, 198, 656
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 3 cut(s) 100, 173, 466
AluBI AGCT 6 cut(s) 702, 707, 773, 816, 858, 893
AluI AGCT 6 cut(s) 702, 707, 773, 816, 858, 893
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 2 cut(s) 509, 868
AoxI GGCC 1 cut(s) 571
ApeKI GCWGC 3 cut(s) 265, 671, 816
ApoI RAATTY 1 cut(s) 781
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 43, 618, 874
AvaI CYCGRG 2 cut(s) 509, 868
AvaII GGWCC 1 cut(s) 104
BalI TGGCCA 1 cut(s) 573
BbvI GCAGC 3 cut(s) 277, 683, 803
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 3 cut(s) 102, 175, 468
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 3 cut(s) 416, 543, 937
BfoI RGCGCY 1 cut(s) 517
BglII AGATCT 1 cut(s) 880
BisI GCNGC 3 cut(s) 266, 672, 817
BlpI GCTNAGC 1 cut(s) 703
BlsI GCNGC 3 cut(s) 267, 673, 818
Bme1390I CCNGG 4 cut(s) 102, 175, 270, 468
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 2 cut(s) 509, 868
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 4 cut(s) 102, 175, 270, 468
BmsI GCATC 2 cut(s) 179, 235
Bpu1102I GCTNAGC 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 830
BsaJI CCNNGG 5 cut(s) 100, 269, 291, 466, 869
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 830
BseBI CCWGG 3 cut(s) 102, 175, 468
BseDI CCNNGG 5 cut(s) 100, 269, 291, 466, 869
BseGI GGATG 3 cut(s) 170, 368, 487
BseJI GATNNNNATC 1 cut(s) 830
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 672
BseXI GCAGC 3 cut(s) 277, 683, 803
BseYI CCCAGC 1 cut(s) 858
BsgI GTGCAG 1 cut(s) 802
BshFI GGCC 1 cut(s) 573
BsiHKCI CYCGRG 2 cut(s) 509, 868
BsiSI CCGG 2 cut(s) 107, 269
BslFI GGGAC 2 cut(s) 310, 716
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 310, 716
BsnI GGCC 1 cut(s) 573
BsoBI CYCGRG 2 cut(s) 509, 868
Bsp143I GATC 3 cut(s) 274, 499, 880
Bsp1720I GCTNAGC 1 cut(s) 703
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 671
BspLI GGNNCC 1 cut(s) 424
BspPI GGATC 1 cut(s) 282
BssECI CCNNGG 5 cut(s) 100, 269, 291, 466, 869
BssMI GATC 3 cut(s) 274, 499, 880
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 102, 175, 468
Bst4CI ACNGT 2 cut(s) 406, 794
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 3 cut(s) 181, 658, 703
BstF5I GGATG 3 cut(s) 170, 368, 487
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 277, 502, 883
BstMBI GATC 3 cut(s) 274, 499, 880
BstMWI GCNNNNNNNGC 2 cut(s) 167, 813
BstNI CCWGG 3 cut(s) 102, 175, 468
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 4 cut(s) 100, 173, 268, 466
BstV1I GCAGC 3 cut(s) 277, 683, 803
BstX2I RGATCY 2 cut(s) 274, 880
BstYI RGATCY 2 cut(s) 274, 880
BsuRI GGCC 1 cut(s) 573
BtsCI GGATG 3 cut(s) 170, 368, 487
Cac8I GCNNGC 1 cut(s) 891
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 178, 197, 655
CviAII CATG 5 cut(s) 76, 285, 523, 575, 778
CviQI GTAC 3 cut(s) 178, 197, 655
DdeI CTNAG 3 cut(s) 181, 658, 703
DpnI GATC 3 cut(s) 276, 501, 882
DpnII GATC 3 cut(s) 274, 499, 880
EaeI YGGCCR 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 509, 868
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 3 cut(s) 100, 173, 466
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 2 cut(s) 172, 250
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 79, 288, 526, 578, 781
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FaqI GGGAC 2 cut(s) 310, 716
FatI CATG 5 cut(s) 75, 284, 522, 574, 777
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 266, 672, 817
FokI GGATG 3 cut(s) 157, 355, 494
Fsp4HI GCNGC 3 cut(s) 266, 672, 817
FspBI CTAG 3 cut(s) 416, 543, 937
GlaI GCGC 1 cut(s) 515
GluI GCNGC 3 cut(s) 266, 672, 817
GsaI CCCAGC 1 cut(s) 862
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 1 cut(s) 573
HapII CCGG 2 cut(s) 107, 269
HhaI GCGC 1 cut(s) 516
Hin1II CATG 5 cut(s) 79, 288, 526, 578, 781
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 2 cut(s) 700, 891
HinfI GANTC 2 cut(s) 365, 800
HpaII CCGG 2 cut(s) 107, 269
HphI GGTGA 3 cut(s) 43, 618, 874
Hpy166II GTNNAC 3 cut(s) 88, 533, 865
Hpy188I TCNGA 3 cut(s) 244, 413, 661
Hpy188III TCNNGA 1 cut(s) 811
Hpy8I GTNNAC 3 cut(s) 88, 533, 865
HpyCH4III ACNGT 2 cut(s) 406, 794
HpyCH4V TGCA 7 cut(s) 170, 248, 356, 383, 587, 819, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 813
HpyF3I CTNAG 3 cut(s) 181, 658, 703
Hsp92II CATG 5 cut(s) 79, 288, 526, 578, 781
HspAI GCGC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 274, 499, 880
LmnI GCTCC 2 cut(s) 293, 422
Lsp1109I GCAGC 3 cut(s) 277, 683, 803
LweI GCATC 2 cut(s) 179, 235
MaeI CTAG 3 cut(s) 416, 543, 937
MaeIII GTNAC 1 cut(s) 580
MalI GATC 3 cut(s) 276, 501, 882
MboI GATC 3 cut(s) 274, 499, 880
MboII GAAGA 3 cut(s) 329, 332, 809
MflI RGATCY 2 cut(s) 274, 880
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 3 cut(s) 566, 693, 781
MluNI TGGCCA 1 cut(s) 573
MmeI TCCRAC 2 cut(s) 391, 644
MnlI CCTC 4 cut(s) 202, 410, 639, 864
Mox20I TGGCCA 1 cut(s) 573
Mph1103I ATGCAT 2 cut(s) 172, 250
MroXI GAANNNNTTC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 573
MseI TTAA 3 cut(s) 35, 677, 696
Msp20I TGGCCA 1 cut(s) 573
MspI CCGG 2 cut(s) 107, 269
MspR9I CCNGG 4 cut(s) 102, 175, 270, 468
MvaI CCWGG 3 cut(s) 102, 175, 468
MwoI GCNNNNNNNGC 2 cut(s) 167, 813
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 274, 499, 880
NlaIII CATG 5 cut(s) 79, 288, 526, 578, 781
NlaIV GGNNCC 1 cut(s) 424
NsiI ATGCAT 2 cut(s) 172, 250
NspI RCATGY 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 365, 800
PkrI GCNGC 3 cut(s) 267, 673, 818
PsiI TTATAA 2 cut(s) 153, 767
Psp6I CCWGG 3 cut(s) 100, 173, 466
PspFI CCCAGC 1 cut(s) 858
PspGI CCWGG 3 cut(s) 100, 173, 466
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 2 cut(s) 274, 880
RsaI GTAC 3 cut(s) 179, 198, 656
RsaNI GTAC 3 cut(s) 178, 197, 655
SaqAI TTAA 3 cut(s) 35, 677, 696
SatI GCNGC 3 cut(s) 266, 672, 817
Sau3AI GATC 3 cut(s) 274, 499, 880
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 4 cut(s) 102, 175, 270, 468
SfaNI GCATC 2 cut(s) 179, 235
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
Sse9I AATT 3 cut(s) 566, 693, 781
SspMI CTAG 3 cut(s) 416, 543, 937
StyD4I CCNGG 4 cut(s) 100, 173, 268, 466
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 406, 794
TasI AATT 3 cut(s) 566, 693, 781
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 2 cut(s) 365, 800
Tru1I TTAA 3 cut(s) 35, 677, 696
Tru9I TTAA 3 cut(s) 35, 677, 696
TseI GCWGC 3 cut(s) 265, 671, 816
TspDTI ATGAA 5 cut(s) 17, 110, 230, 357, 794
TspGWI ACGGA 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 781
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 3 cut(s) 416, 543, 937
Zsp2I ATGCAT 2 cut(s) 172, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.