Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013850

Physical Location & Seq

Genomic Coordinates Reverse (-)

19579326 .. 19580910

Gene Structure 1585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGAACGCAGTACAGTCGTTGTTTATGGTGCTGGTGCTTTTGTTATTGGCTCCTTTCTTTAGTTATACCCCTCTTGTTGCCCTATCTGCCATTATCGTATCTGCCATGCTTGGACTCATAAAATACGACGTAGCTTTTGAACTGCTTAGGGTTGACAAGTTCGACTTTCTAGTTTGCATGGCTGCCTTCTTAGGAGTGGCCTTCATAAGCATGGACATTGGTCTTGGCCTCTCAGTGGGTCTTAGTCTCGTGAGATCACTGCTTTATGTGGCTAGGCCTGGCACTTGTAAGCTTGGAAAACTACCAGACTTGGGTCTATATCGTGACTTAGATCAGTATCCAAATGGAATAAAACATTCAGGGATCCTTGTCCTACAAATTGGCTCCCCCATTTACTGTGCAAATTGCAACTATATTCGAGAGAGGATTTTGAGATGGATTCGCGATGAGCAAACCAGTTCCAGAGATGTTGTTGAGCATGTCTTGCTCGATTTATCAGGAGTTGTCACCATTGACGTGCCTGGCATTGAAACAATGGCCGAGATACTTAAAATCCTGAGTGGAATGAACATTAAGCTAGGACTAATAAACCCGAGAGTTAAGGTGATGGAGAAGATGATAGCATCGCATTTCCTAGACAAAATCAAGAAGGAAAATGTGTTCTTGTCCGCGGAGGATGCAGTCGAATCATGCAGGTTCTCACTTGACAGGTCCACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

241

Amino Acids

26.74

Weight (kDa)

6.82

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfate_transp	PF00916	1 - 63	1.3e-11	Sulfate permease family
STAS	PF01740	118 - 228	2.1e-18	STAS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19600
fragaria_vesca	FvH4_1g05160
malus_domestica	MD15G1188100.v1.1
prunus_persica	Prupe.7G228300_v2.0.a1
pyrus_communis	pycom15g16870
rosa_chinensis	RchiOBHm_Chr2g0090861
rosa_laevigata	RLG00000016151
rosa_multiflora	Rmu_sc0000792.1_g000008 Rmu_sc0003214.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150790
rosa_rugosa	Rorug02G0010700
rosa_samantha	Rh2AG056900 Rh2BG055400 Rh2CG057700 Rh2DG056300 Rh7BG227000
rosa_wichuraiana	Rw2G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	687
AccII	CGCG	2 cut(s)	447, 674
AciI	CCGC	2 cut(s)	672, 674
AclWI	GGATC	2 cut(s)	361, 374
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	2 cut(s)	15, 722
AfiI	CCNNNNNNNGG	2 cut(s)	238, 314
AgsI	TTSAA	2 cut(s)	143, 533
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	280, 523
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	3 cut(s)	137, 295, 580
AluI	AGCT	3 cut(s)	137, 295, 580
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	361, 374
Ama87I	CYCGRG	1 cut(s)	595
AoxI	GGCC	4 cut(s)	201, 229, 278, 540
ApeKI	GCWGC	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspS9I	GGNCC	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	502, 619
AvaI	CYCGRG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	432, 604
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	282, 525
BciVI	GTATCC	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	4 cut(s)	173, 276, 581, 638
BfuAI	ACCTGC	1 cut(s)	687
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	282, 525
Bme18I	GGWCC	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	595
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	3 cut(s)	54, 368, 388
BmrFI	CCNGG	2 cut(s)	282, 525
BmsI	GCATC	2 cut(s)	635, 670
BoxI	GACNNNNGTC	2 cut(s)	222, 315
Bpu10I	CCTNAGC	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 314
Bse1I	ACTGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	282, 525
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	238, 314
BseMII	CTCAG	2 cut(s)	249, 551
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	447, 674
BshFI	GGCC	4 cut(s)	203, 231, 280, 542
BsiHKCI	CYCGRG	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	238, 314
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	203, 231, 280, 542
BsoBI	CYCGRG	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	257, 334, 366
Bsp68I	TCGCGA	1 cut(s)	447
BspACI	CCGC	2 cut(s)	672, 674
BspANI	GGCC	4 cut(s)	203, 231, 280, 542
BspCNI	CTCAG	2 cut(s)	248, 552
BspFNI	CGCG	2 cut(s)	447, 674
BspLI	GGNNCC	3 cut(s)	54, 368, 388
BspMI	ACCTGC	1 cut(s)	687
BspPI	GGATC	2 cut(s)	361, 374
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	3 cut(s)	257, 334, 366
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	282, 525
Bst4CI	ACNGT	2 cut(s)	18, 401
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	720
BstDEI	CTNAG	6 cut(s)	149, 193, 235, 245, 331, 560
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	2 cut(s)	447, 674
BstKTI	GATC	3 cut(s)	260, 337, 369
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	257, 334, 366
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 487, 680
BstNI	CCWGG	2 cut(s)	282, 525
BstNSI	RCATGY	1 cut(s)	485
BstPAI	GACNNNNGTC	2 cut(s)	222, 315
BstSCI	CCNGG	2 cut(s)	280, 523
BstUI	CGCG	2 cut(s)	447, 674
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	203, 231, 280, 542
BtgI	CCRYGG	1 cut(s)	672
BtgZI	GCGATG	2 cut(s)	462, 612
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	243, 260
BtuMI	TCGCGA	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	714
Cfr42I	CCGCGG	1 cut(s)	675
Csp6I	GTAC	2 cut(s)	14, 721
CviAII	CATG	5 cut(s)	109, 181, 214, 482, 693
CviQI	GTAC	2 cut(s)	14, 721
DdeI	CTNAG	6 cut(s)	149, 193, 235, 245, 331, 560
DpnI	GATC	3 cut(s)	259, 336, 368
DpnII	GATC	3 cut(s)	257, 334, 366
EaeI	YGGCCR	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	280, 523
FaeI	CATG	5 cut(s)	112, 184, 217, 485, 696
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	5 cut(s)	108, 180, 213, 481, 692
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	4 cut(s)	173, 276, 581, 638
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	203, 231, 280, 542
Hin1II	CATG	5 cut(s)	112, 184, 217, 485, 696
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	117, 442, 689
HphI	GGTGA	2 cut(s)	502, 619
Hpy166II	GTNNAC	2 cut(s)	157, 717
Hpy188III	TCNNGA	8 cut(s)	253, 326, 422, 446, 465, 501, 559, 649
Hpy8I	GTNNAC	2 cut(s)	157, 717
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	199, 214, 646
HpyCH4III	ACNGT	2 cut(s)	18, 401
HpyCH4IV	ACGT	3 cut(s)	132, 519, 719
HpyCH4V	TGCA	5 cut(s)	180, 404, 411, 683, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 487, 680
HpyF3I	CTNAG	6 cut(s)	149, 193, 235, 245, 331, 560
HpySE526I	ACGT	3 cut(s)	132, 519, 719
Hsp92II	CATG	5 cut(s)	112, 184, 217, 485, 696
KspI	CCGCGG	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	257, 334, 366
LmnI	GCTCC	2 cut(s)	58, 392
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	635, 670
MaeI	CTAG	4 cut(s)	173, 276, 581, 638
MaeII	ACGT	3 cut(s)	132, 519, 719
MaeIII	GTNAC	2 cut(s)	326, 508
MalI	GATC	3 cut(s)	259, 336, 368
MboI	GATC	3 cut(s)	257, 334, 366
MboII	GAAGA	1 cut(s)	628
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	2 cut(s)	381, 406
MlyI	GAGTC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	84, 242, 420, 670
MseI	TTAA	3 cut(s)	552, 576, 603
MslI	CAYNNNNRTG	2 cut(s)	212, 518
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	2 cut(s)	282, 525
MvaI	CCWGG	2 cut(s)	282, 525
MvnI	CGCG	2 cut(s)	447, 674
MwoI	GCNNNNNNNGC	3 cut(s)	89, 487, 680
NdeII	GATC	3 cut(s)	257, 334, 366
NlaIII	CATG	5 cut(s)	112, 184, 217, 485, 696
NlaIV	GGNNCC	3 cut(s)	54, 368, 388
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	326, 508
NruI	TCGCGA	1 cut(s)	447
NspI	RCATGY	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	442, 689
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	720
PshAI	GACNNNNGTC	2 cut(s)	222, 315
Psp6I	CCWGG	2 cut(s)	280, 523
PspGI	CCWGG	2 cut(s)	280, 523
PspN4I	GGNNCC	3 cut(s)	54, 368, 388
PspPI	GGNCC	1 cut(s)	714
PsuI	RGATCY	1 cut(s)	366
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	2 cut(s)	15, 722
RsaNI	GTAC	2 cut(s)	14, 721
RseI	CAYNNNNRTG	2 cut(s)	212, 518
SacII	CCGCGG	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	552, 576, 603
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	257, 334, 366
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	282, 525
SetI	ASST	9 cut(s)	135, 139, 297, 522, 582, 609, 701, 716, 722
SfaNI	GCATC	2 cut(s)	635, 670
Sfr303I	CCGCGG	1 cut(s)	675
SgrBI	CCGCGG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	714
SmiMI	CAYNNNNRTG	2 cut(s)	212, 518
Sse9I	AATT	2 cut(s)	381, 406
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	672, 674
SspMI	CTAG	4 cut(s)	173, 276, 581, 638
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	280, 523
TaaI	ACNGT	2 cut(s)	18, 401
TaiI	ACGT	3 cut(s)	135, 522, 722
TaqI	TCGA	4 cut(s)	165, 421, 492, 687
TasI	AATT	2 cut(s)	381, 406
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	442, 689
Tru1I	TTAA	3 cut(s)	552, 576, 603
Tru9I	TTAA	3 cut(s)	552, 576, 603
TscAI	CASTG	2 cut(s)	243, 267
TseFI	GTSAC	2 cut(s)	326, 508
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	326, 508
TspDTI	ATGAA	2 cut(s)	196, 584
TspRI	CASTG	2 cut(s)	243, 267
VpaK11BI	GGWCC	1 cut(s)	714
XceI	RCATGY	1 cut(s)	485
XspI	CTAG	4 cut(s)	173, 276, 581, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.