The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1416 |
| Acc36I | ACCTGC | 1 cut(s) | 423 |
| AccB1I | GGYRCC | 1 cut(s) | 1667 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1495, 1975 |
| AccBSI | CCGCTC | 1 cut(s) | 177 |
| AccII | CGCG | 3 cut(s) | 109, 196, 562 |
| AccIII | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| AclWI | GGATC | 9 cut(s) | 41, 54, 98, 284, 297, 761, 1786, 1892, 2831 |
| AcoI | YGGCCR | 5 cut(s) | 3, 1120, 1486, 1966, 2117 |
| AcsI | RAATTY | 3 cut(s) | 436, 1825, 1848 |
| AcuI | CTGAAG | 2 cut(s) | 861, 2175 |
| AdeI | CACNNNGTG | 1 cut(s) | 1495 |
| AfaI | GTAC | 3 cut(s) | 693, 1242, 1315 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 122, 176, 215, 1459, 1495, 1821, 1975, 2624, 2766 |
| AflIII | ACRYGT | 4 cut(s) | 9, 487, 1227, 2146 |
| AgeI | ACCGGT | 1 cut(s) | 2851 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1037, 1348, 2592 |
| AjiI | CACGTC | 2 cut(s) | 10, 490 |
| AjnI | CCWGG | 3 cut(s) | 211, 979, 2761 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 993, 1025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2518, 2550 |
| Alw21I | GWGCWC | 3 cut(s) | 300, 746, 2369 |
| Alw26I | GTCTC | 4 cut(s) | 152, 1024, 2597, 2649 |
| AlwI | GGATC | 9 cut(s) | 41, 54, 98, 284, 297, 761, 1786, 1892, 2831 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 385 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| Aor13HI | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| ApeKI | GCWGC | 4 cut(s) | 52, 183, 407, 1213 |
| ApoI | RAATTY | 3 cut(s) | 436, 1825, 1848 |
| AsiGI | ACCGGT | 1 cut(s) | 2851 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 116, 1362 |
| AspLEI | GCGC | 3 cut(s) | 109, 1417, 1631 |
| AspS9I | GGNCC | 7 cut(s) | 153, 206, 1013, 1750, 2255, 2594, 2768 |
| AsuC2I | CCSGG | 2 cut(s) | 171, 204 |
| AsuHPI | GGTGA | 4 cut(s) | 1728, 2396, 2671, 2749 |
| AsuII | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| AsuNHI | GCTAGC | 1 cut(s) | 1106 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| AvaII | GGWCC | 4 cut(s) | 1013, 1750, 2255, 2594 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2816, 2849 |
| BalI | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| BamHI | GGATCC | 2 cut(s) | 46, 289 |
| BanI | GGYRCC | 1 cut(s) | 1667 |
| BanII | GRGCYC | 2 cut(s) | 300, 1568 |
| BbsI | GAAGAC | 2 cut(s) | 532, 1533 |
| Bbv12I | GWGCWC | 3 cut(s) | 300, 746, 2369 |
| BbvI | GCAGC | 4 cut(s) | 64, 195, 394, 1225 |
| BceAI | ACGGC | 2 cut(s) | 64, 154 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 12, 46 |
| BciT130I | CCWGG | 3 cut(s) | 213, 981, 2763 |
| BciVI | GTATCC | 1 cut(s) | 2817 |
| BclI | TGATCA | 1 cut(s) | 2248 |
| BcnI | CCSGG | 2 cut(s) | 171, 204 |
| BcoDI | GTCTC | 4 cut(s) | 152, 1024, 2597, 2649 |
| BfaI | CTAG | 7 cut(s) | 669, 936, 1091, 1107, 1400, 1911, 1956 |
| BfoI | RGCGCY | 1 cut(s) | 1632 |
| BfuAI | ACCTGC | 1 cut(s) | 423 |
| BfuI | GTATCC | 1 cut(s) | 2817 |
| BglII | AGATCT | 1 cut(s) | 699 |
| BisI | GCNGC | 6 cut(s) | 53, 184, 408, 932, 1214, 1618 |
| BlpI | GCTNAGC | 1 cut(s) | 299 |
| BlsI | GCNGC | 6 cut(s) | 54, 185, 409, 933, 1215, 1619 |
| Bme1390I | CCNGG | 5 cut(s) | 171, 204, 213, 981, 2763 |
| Bme18I | GGWCC | 4 cut(s) | 1013, 1750, 2255, 2594 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1037, 1348, 2592 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmgBI | CACGTC | 2 cut(s) | 10, 490 |
| BmgT120I | GGNCC | 7 cut(s) | 153, 206, 1013, 1750, 2255, 2594, 2768 |
| BmiI | GGNNCC | 6 cut(s) | 48, 208, 241, 291, 1669, 1752 |
| BmrFI | CCNGG | 5 cut(s) | 171, 204, 213, 981, 2763 |
| BmsI | GCATC | 8 cut(s) | 439, 580, 875, 1414, 1436, 1475, 1778, 2545 |
| BmtI | GCTAGC | 1 cut(s) | 1110 |
| BpiI | GAAGAC | 2 cut(s) | 532, 1533 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 59, 91, 2412, 2444 |
| BpmI | CTGGAG | 2 cut(s) | 234, 669 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 299 |
| Bpu14I | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| BpuEI | CTTGAG | 3 cut(s) | 41, 1048, 2574 |
| BpuMI | CCSGG | 2 cut(s) | 171, 204 |
| BsaAI | YACGTR | 2 cut(s) | 1244, 2147 |
| BsaI | GGTCTC | 1 cut(s) | 1024 |
| BsaWI | WCCGGW | 5 cut(s) | 242, 292, 1054, 1814, 2851 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 313, 343, 2518, 2548 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 122, 176, 215, 1459, 1495, 1821, 1975, 2624, 2766 |
| Bse118I | RCCGGY | 1 cut(s) | 2851 |
| Bse1I | ACTGG | 3 cut(s) | 1156, 1630, 1669 |
| Bse3DI | GCAATG | 2 cut(s) | 1693, 2565 |
| BseAI | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| BseBI | CCWGG | 3 cut(s) | 213, 981, 2763 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 122, 176, 215, 1459, 1495, 1821, 1975, 2624, 2766 |
| BseMI | GCAATG | 2 cut(s) | 1693, 2565 |
| BseMII | CTCAG | 5 cut(s) | 313, 387, 1811, 2259, 2654 |
| BseNI | ACTGG | 3 cut(s) | 1156, 1630, 1669 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 4 cut(s) | 64, 195, 394, 1225 |
| BseYI | CCCAGC | 1 cut(s) | 1820 |
| BsgI | GTGCAG | 1 cut(s) | 2171 |
| Bsh1236I | CGCG | 3 cut(s) | 109, 196, 562 |
| Bsh1285I | CGRYCG | 2 cut(s) | 32, 2852 |
| BshNI | GGYRCC | 1 cut(s) | 1667 |
| BshTI | ACCGGT | 1 cut(s) | 2851 |
| BsiEI | CGRYCG | 2 cut(s) | 32, 2852 |
| BsiHKAI | GWGCWC | 3 cut(s) | 300, 746, 2369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BslFI | GGGAC | 3 cut(s) | 1424, 1435, 1512 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 122, 176, 215, 1459, 1495, 1821, 1975, 2624, 2766 |
| BsmAI | GTCTC | 4 cut(s) | 152, 1024, 2597, 2649 |
| BsmBI | CGTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 3 cut(s) | 1424, 1435, 1512 |
| Bso31I | GGTCTC | 1 cut(s) | 1024 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp119I | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| Bsp1286I | GDGCHC | 4 cut(s) | 300, 746, 1568, 2369 |
| Bsp13I | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 299 |
| Bsp19I | CCATGG | 1 cut(s) | 2380 |
| BspCNI | CTCAG | 5 cut(s) | 312, 388, 1810, 2260, 2653 |
| BspEI | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| BspFNI | CGCG | 3 cut(s) | 109, 196, 562 |
| BspLI | GGNNCC | 6 cut(s) | 48, 208, 241, 291, 1669, 1752 |
| BspMI | ACCTGC | 1 cut(s) | 423 |
| BspOI | GCTAGC | 1 cut(s) | 1110 |
| BspPI | GGATC | 9 cut(s) | 41, 54, 98, 284, 297, 761, 1786, 1892, 2831 |
| BspQI | GCTCTTC | 1 cut(s) | 2491 |
| BspT104I | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| BspT107I | GGYRCC | 1 cut(s) | 1667 |
| BspTNI | GGTCTC | 1 cut(s) | 1024 |
| BsrBI | CCGCTC | 1 cut(s) | 177 |
| BsrDI | GCAATG | 2 cut(s) | 1693, 2565 |
| BsrFI | RCCGGY | 1 cut(s) | 2851 |
| BsrI | ACTGG | 3 cut(s) | 1156, 1630, 1669 |
| BssAI | RCCGGY | 1 cut(s) | 2851 |
| BssT1I | CCWWGG | 7 cut(s) | 798, 1265, 1442, 2289, 2380, 2618, 2819 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 981, 2763 |
| Bst4CI | ACNGT | 7 cut(s) | 849, 1207, 1318, 1411, 1744, 1975, 2446 |
| Bst6I | CTCTTC | 4 cut(s) | 248, 677, 2303, 2491 |
| BstBAI | YACGTR | 2 cut(s) | 1244, 2147 |
| BstBI | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| BstC8I | GCNNGC | 7 cut(s) | 428, 1108, 1384, 2057, 2108, 2451, 2748 |
| BstDEI | CTNAG | 7 cut(s) | 299, 396, 775, 1773, 1797, 2268, 2640 |
| BstDSI | CCRYGG | 1 cut(s) | 2380 |
| BstFNI | CGCG | 3 cut(s) | 109, 196, 562 |
| BstH2I | RGCGCY | 1 cut(s) | 1632 |
| BstHHI | GCGC | 3 cut(s) | 109, 1417, 1631 |
| BstMAI | GTCTC | 4 cut(s) | 152, 1024, 2597, 2649 |
| BstMCI | CGRYCG | 2 cut(s) | 32, 2852 |
| BstNI | CCWGG | 3 cut(s) | 213, 981, 2763 |
| BstNSI | RCATGY | 3 cut(s) | 1053, 1231, 2110 |
| BstSCI | CCNGG | 5 cut(s) | 169, 202, 211, 979, 2761 |
| BstUI | CGCG | 3 cut(s) | 109, 196, 562 |
| BstV1I | GCAGC | 4 cut(s) | 64, 195, 394, 1225 |
| BstV2I | GAAGAC | 2 cut(s) | 532, 1533 |
| BstX2I | RGATCY | 5 cut(s) | 46, 289, 699, 766, 1791 |
| BstYI | RGATCY | 5 cut(s) | 46, 289, 699, 766, 1791 |
| BsuI | GTATCC | 1 cut(s) | 2817 |
| BtgI | CCRYGG | 1 cut(s) | 2380 |
| BtrI | CACGTC | 2 cut(s) | 10, 490 |
| BtsI | GCAGTG | 4 cut(s) | 148, 386, 746, 1383 |
| BveI | ACCTGC | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 7 cut(s) | 428, 1108, 1384, 2057, 2108, 2451, 2748 |
| CaiI | CAGNNNCTG | 1 cut(s) | 385 |
| CfoI | GCGC | 3 cut(s) | 109, 1417, 1631 |
| Cfr10I | RCCGGY | 1 cut(s) | 2851 |
| Cfr13I | GGNCC | 7 cut(s) | 153, 206, 1013, 1750, 2255, 2594, 2768 |
| CseI | GACGC | 1 cut(s) | 169 |
| Csp6I | GTAC | 3 cut(s) | 692, 1241, 1314 |
| CspAI | ACCGGT | 1 cut(s) | 2851 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1632, 1667 |
| CviQI | GTAC | 3 cut(s) | 692, 1241, 1314 |
| DdeI | CTNAG | 7 cut(s) | 299, 396, 775, 1773, 1797, 2268, 2640 |
| DraI | TTTAAA | 1 cut(s) | 957 |
| DraIII | CACNNNGTG | 1 cut(s) | 1495 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1037, 1348, 2592 |
| EaeI | YGGCCR | 5 cut(s) | 3, 1120, 1486, 1966, 2117 |
| Eam1104I | CTCTTC | 4 cut(s) | 248, 677, 2303, 2491 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1037, 1348, 2592 |
| EarI | CTCTTC | 4 cut(s) | 248, 677, 2303, 2491 |
| EciI | GGCGGA | 1 cut(s) | 80 |
| Ecl136II | GAGCTC | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 7 cut(s) | 798, 1265, 1442, 2289, 2380, 2618, 2819 |
| Eco147I | AGGCCT | 1 cut(s) | 74 |
| Eco24I | GRGCYC | 2 cut(s) | 300, 1568 |
| Eco31I | GGTCTC | 1 cut(s) | 1024 |
| Eco32I | GATATC | 1 cut(s) | 1734 |
| Eco47I | GGWCC | 4 cut(s) | 1013, 1750, 2255, 2594 |
| Eco53kI | GAGCTC | 1 cut(s) | 298 |
| Eco57I | CTGAAG | 2 cut(s) | 861, 2175 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| EcoICRI | GAGCTC | 1 cut(s) | 298 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1750 |
| EcoRI | GAATTC | 2 cut(s) | 436, 1848 |
| EcoRII | CCWGG | 3 cut(s) | 211, 979, 2761 |
| EcoRV | GATATC | 1 cut(s) | 1734 |
| EcoT14I | CCWWGG | 7 cut(s) | 798, 1265, 1442, 2289, 2380, 2618, 2819 |
| EcoT22I | ATGCAT | 2 cut(s) | 630, 1429 |
| EcoT38I | GRGCYC | 2 cut(s) | 300, 1568 |
| ErhI | CCWWGG | 7 cut(s) | 798, 1265, 1442, 2289, 2380, 2618, 2819 |
| Esp3I | CGTCTC | 1 cut(s) | 152 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2204, 2236 |
| FaqI | GGGAC | 3 cut(s) | 1424, 1435, 1512 |
| FauI | CCCGC | 1 cut(s) | 1375 |
| FauNDI | CATATG | 2 cut(s) | 973, 1157 |
| FbaI | TGATCA | 1 cut(s) | 2248 |
| Fnu4HI | GCNGC | 6 cut(s) | 53, 184, 408, 932, 1214, 1618 |
| FriOI | GRGCYC | 2 cut(s) | 300, 1568 |
| Fsp4HI | GCNGC | 6 cut(s) | 53, 184, 408, 932, 1214, 1618 |
| FspBI | CTAG | 7 cut(s) | 669, 936, 1091, 1107, 1400, 1911, 1956 |
| FspI | TGCGCA | 1 cut(s) | 1416 |
| GlaI | GCGC | 3 cut(s) | 108, 1416, 1630 |
| GluI | GCNGC | 6 cut(s) | 53, 184, 408, 932, 1214, 1618 |
| GsaI | CCCAGC | 1 cut(s) | 1824 |
| GsuI | CTGGAG | 2 cut(s) | 234, 669 |
| HaeII | RGCGCY | 1 cut(s) | 1632 |
| HgaI | GACGC | 1 cut(s) | 169 |
| HhaI | GCGC | 3 cut(s) | 109, 1417, 1631 |
| Hin6I | GCGC | 3 cut(s) | 107, 1415, 1629 |
| HinP1I | GCGC | 3 cut(s) | 107, 1415, 1629 |
| HphI | GGTGA | 4 cut(s) | 1728, 2396, 2671, 2749 |
| Hpy166II | GTNNAC | 6 cut(s) | 200, 610, 641, 694, 829, 2180 |
| Hpy8I | GTNNAC | 6 cut(s) | 200, 610, 641, 694, 829, 2180 |
| Hpy99I | CGWCG | 1 cut(s) | 11 |
| HpyAV | CCTTC | 7 cut(s) | 725, 1052, 1453, 1513, 1741, 1945, 2731 |
| HpyCH4III | ACNGT | 7 cut(s) | 849, 1207, 1318, 1411, 1744, 1975, 2446 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 489, 1019, 1243, 1945, 2146 |
| HpyF3I | CTNAG | 7 cut(s) | 299, 396, 775, 1773, 1797, 2268, 2640 |
| HpySE526I | ACGT | 6 cut(s) | 9, 489, 1019, 1243, 1945, 2146 |
| HspAI | GCGC | 3 cut(s) | 107, 1415, 1629 |
| Kpn2I | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| Ksp22I | TGATCA | 1 cut(s) | 2248 |
| LguI | GCTCTTC | 1 cut(s) | 2491 |
| LmnI | GCTCC | 6 cut(s) | 174, 245, 295, 749, 1046, 2050 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 195, 394, 1225 |
| LweI | GCATC | 8 cut(s) | 439, 580, 875, 1414, 1436, 1475, 1778, 2545 |
| MaeI | CTAG | 7 cut(s) | 669, 936, 1091, 1107, 1400, 1911, 1956 |
| MaeII | ACGT | 6 cut(s) | 9, 489, 1019, 1243, 1945, 2146 |
| MaeIII | GTNAC | 4 cut(s) | 143, 257, 2017, 2494 |
| MbiI | CCGCTC | 1 cut(s) | 177 |
| MfeI | CAATTG | 3 cut(s) | 2542, 2607, 2807 |
| MflI | RGATCY | 5 cut(s) | 46, 289, 699, 766, 1791 |
| MhlI | GDGCHC | 4 cut(s) | 300, 746, 1568, 2369 |
| MlsI | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| MluNI | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| MlyI | GAGTC | 2 cut(s) | 2525, 2581 |
| MmeI | TCCRAC | 3 cut(s) | 246, 831, 1002 |
| Mox20I | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| Mph1103I | ATGCAT | 2 cut(s) | 630, 1429 |
| MroI | TCCGGA | 3 cut(s) | 242, 292, 1054 |
| MroXI | GAANNNNTTC | 2 cut(s) | 116, 1362 |
| MscI | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| MseI | TTAA | 9 cut(s) | 129, 165, 782, 956, 993, 1473, 1763, 1862, 2403 |
| Msp20I | TGGCCA | 3 cut(s) | 1122, 1488, 1968 |
| MspA1I | CMGCKG | 1 cut(s) | 2600 |
| MspR9I | CCNGG | 5 cut(s) | 171, 204, 213, 981, 2763 |
| MunI | CAATTG | 3 cut(s) | 2542, 2607, 2807 |
| MvaI | CCWGG | 3 cut(s) | 213, 981, 2763 |
| MvnI | CGCG | 3 cut(s) | 109, 196, 562 |
| NciI | CCSGG | 2 cut(s) | 171, 204 |
| NcoI | CCATGG | 1 cut(s) | 2380 |
| NdeI | CATATG | 2 cut(s) | 973, 1157 |
| NheI | GCTAGC | 1 cut(s) | 1106 |
| NlaIV | GGNNCC | 6 cut(s) | 48, 208, 241, 291, 1669, 1752 |
| NmuCI | GTSAC | 3 cut(s) | 143, 257, 2017 |
| NsbI | TGCGCA | 1 cut(s) | 1416 |
| NsiI | ATGCAT | 2 cut(s) | 630, 1429 |
| NspI | RCATGY | 3 cut(s) | 1053, 1231, 2110 |
| NspV | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| PaeI | GCATGC | 1 cut(s) | 2110 |
| PceI | AGGCCT | 1 cut(s) | 74 |
| PciI | ACATGT | 1 cut(s) | 1227 |
| PciSI | GCTCTTC | 1 cut(s) | 2491 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 83 |
| PdmI | GAANNNNTTC | 2 cut(s) | 116, 1362 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1495, 1975 |
| PinAI | ACCGGT | 1 cut(s) | 2851 |
| PkrI | GCNGC | 6 cut(s) | 54, 185, 409, 933, 1215, 1619 |
| Ple19I | CGATCG | 1 cut(s) | 32 |
| PleI | GAGTC | 2 cut(s) | 2524, 2581 |
| PpsI | GAGTC | 2 cut(s) | 2524, 2581 |
| Ppu21I | YACGTR | 2 cut(s) | 1244, 2147 |
| PpuMI | RGGWCCY | 1 cut(s) | 1750 |
| PscI | ACATGT | 1 cut(s) | 1227 |
| Psp124BI | GAGCTC | 1 cut(s) | 300 |
| Psp5II | RGGWCCY | 1 cut(s) | 1750 |
| Psp6I | CCWGG | 3 cut(s) | 211, 979, 2761 |
| PspFI | CCCAGC | 1 cut(s) | 1820 |
| PspGI | CCWGG | 3 cut(s) | 211, 979, 2761 |
| PspN4I | GGNNCC | 6 cut(s) | 48, 208, 241, 291, 1669, 1752 |
| PspPI | GGNCC | 7 cut(s) | 153, 206, 1013, 1750, 2255, 2594, 2768 |
| PspPPI | RGGWCCY | 1 cut(s) | 1750 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1176, 1208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 385 |
| PsuI | RGATCY | 5 cut(s) | 46, 289, 699, 766, 1791 |
| PvuI | CGATCG | 1 cut(s) | 32 |
| RsaI | GTAC | 3 cut(s) | 693, 1242, 1315 |
| RsaNI | GTAC | 3 cut(s) | 692, 1241, 1314 |
| SacI | GAGCTC | 1 cut(s) | 300 |
| SapI | GCTCTTC | 1 cut(s) | 2491 |
| SaqAI | TTAA | 9 cut(s) | 129, 165, 782, 956, 993, 1473, 1763, 1862, 2403 |
| SatI | GCNGC | 6 cut(s) | 53, 184, 408, 932, 1214, 1618 |
| Sau96I | GGNCC | 7 cut(s) | 153, 206, 1013, 1750, 2255, 2594, 2768 |
| SchI | GAGTC | 2 cut(s) | 2525, 2581 |
| ScrFI | CCNGG | 5 cut(s) | 171, 204, 213, 981, 2763 |
| SduI | GDGCHC | 4 cut(s) | 300, 746, 1568, 2369 |
| SfaNI | GCATC | 8 cut(s) | 439, 580, 875, 1414, 1436, 1475, 1778, 2545 |
| SfuI | TTCGAA | 5 cut(s) | 718, 1141, 1366, 1544, 2306 |
| SinI | GGWCC | 4 cut(s) | 1013, 1750, 2255, 2594 |
| SmlI | CTYRAG | 3 cut(s) | 56, 1027, 2589 |
| SmoI | CTYRAG | 3 cut(s) | 56, 1027, 2589 |
| SphI | GCATGC | 1 cut(s) | 2110 |
| SseBI | AGGCCT | 1 cut(s) | 74 |
| SspI | AATATT | 1 cut(s) | 1258 |
| SspMI | CTAG | 7 cut(s) | 669, 936, 1091, 1107, 1400, 1911, 1956 |
| SstI | GAGCTC | 1 cut(s) | 300 |
| StuI | AGGCCT | 1 cut(s) | 74 |
| StyD4I | CCNGG | 5 cut(s) | 169, 202, 211, 979, 2761 |
| StyI | CCWWGG | 7 cut(s) | 798, 1265, 1442, 2289, 2380, 2618, 2819 |
| TaaI | ACNGT | 7 cut(s) | 849, 1207, 1318, 1411, 1744, 1975, 2446 |
| TaiI | ACGT | 6 cut(s) | 12, 492, 1022, 1246, 1948, 2149 |
| TauI | GCSGC | 2 cut(s) | 934, 1620 |
| Tru1I | TTAA | 9 cut(s) | 129, 165, 782, 956, 993, 1473, 1763, 1862, 2403 |
| Tru9I | TTAA | 9 cut(s) | 129, 165, 782, 956, 993, 1473, 1763, 1862, 2403 |
| TseFI | GTSAC | 3 cut(s) | 143, 257, 2017 |
| TseI | GCWGC | 4 cut(s) | 52, 183, 407, 1213 |
| Tsp45I | GTSAC | 3 cut(s) | 143, 257, 2017 |
| TspDTI | ATGAA | 9 cut(s) | 89, 612, 923, 1085, 1830, 1956, 2232, 2358, 2724 |
| TspGWI | ACGGA | 1 cut(s) | 2354 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1495, 1975 |
| VpaK11BI | GGWCC | 4 cut(s) | 1013, 1750, 2255, 2594 |
| XapI | RAATTY | 3 cut(s) | 436, 1825, 1848 |
| XbaI | TCTAGA | 1 cut(s) | 1910 |
| XceI | RCATGY | 3 cut(s) | 1053, 1231, 2110 |
| XmnI | GAANNNNTTC | 2 cut(s) | 116, 1362 |
| XspI | CTAG | 7 cut(s) | 669, 936, 1091, 1107, 1400, 1911, 1956 |
| Zsp2I | ATGCAT | 2 cut(s) | 630, 1429 |