The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR3_2nd | PF25172 | 3 - 152 | 1.9e-13 | WDR3 second beta-propeller domain |
| Beta-prop_THOC3 | PF25174 | 8 - 110 | 1.7e-09 | THOC3 beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 9 - 155 | 5e-17 | WDR3 first beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 12 - 154 | 2.2e-21 | WDR5 beta-propeller domain |
| WDR55 | PF24796 | 16 - 199 | 5.3e-15 | WDR55 |
| WD40_Prp19 | PF24814 | 16 - 184 | 9.5e-20 | Prp19 WD40 domain |
| Beta-prop_WDR36-Utp21_2nd | PF25168 | 18 - 174 | 2.3e-09 | WDR36/Utp21 second beta-propeller domain |
| Beta-prop_EML_2 | PF23414 | 20 - 172 | 1.9e-15 | Echinoderm microtubule-associated protein second beta-propeller |
| Beta-prop_WDR36-Utp21_1st | PF25171 | 31 - 170 | 4.2e-06 | WDR36/Utp21 first beta-propeller |
| WD40_Gbeta | PF25391 | 32 - 211 | 8.6e-15 | G protein beta WD-40 repeat protein |
| WD40_CDC20-Fz | PF24807 | 35 - 193 | 3.1e-17 | CDC20/Fizzy WD40 domain |
| WD40_MABP1-WDR62_1st | PF24780 | 39 - 173 | 5.3e-06 | MABP1/WDR62 first WD40 domain |
| WD40_WDHD1_1st | PF24817 | 58 - 131 | 5e-11 | WDHD1 first WD40 domain |
| WD40_MABP1-WDR62_2nd | PF24782 | 59 - 167 | 6.5e-07 | MABP1/WDR62 second WD40 domain |
| Beta-prop_THOC3 | PF25174 | 60 - 192 | 1.1e-20 | THOC3 beta-propeller domain |
| Beta-prop_TEP1_2nd | PF25047 | 69 - 260 | 3.3e-14 | TEP-1 second beta-propeller |
| Beta-prop_EIPR1 | PF23609 | 79 - 170 | 2e-06 | EIPR1 beta-propeller |
| WD40 | PF00400 | 91 - 127 | 3.8e-08 | WD domain, G-beta repeat |
| WD40 | PF00400 | 133 - 171 | 4.8e-07 | WD domain, G-beta repeat |
| Beta-prop_WDR3_1st | PF25173 | 135 - 296 | 3.8e-28 | WDR3 first beta-propeller domain |
| EIF3I | PF24805 | 138 - 229 | 1.7e-06 | EIF3I |
| WDR55 | PF24796 | 138 - 296 | 2.8e-16 | WDR55 |
| Beta-prop_RIG_2nd | PF23775 | 139 - 246 | 2.6e-06 | RIG second beta-propeller |
| Beta-prop_WDR3_2nd | PF25172 | 140 - 260 | 1.5e-15 | WDR3 second beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 140 - 294 | 7.7e-33 | WDR5 beta-propeller domain |
| Beta-prop_EML | PF23409 | 164 - 261 | 6.8e-08 | Echinoderm microtubule-associated protein first beta-propeller |
| Beta-prop_WDR36-Utp21_1st | PF25171 | 167 - 256 | 2.1e-06 | WDR36/Utp21 first beta-propeller |
| WD40 | PF00400 | 177 - 215 | 4.9e-07 | WD domain, G-beta repeat |
| Beta-prop_SCAP | PF24017 | 183 - 259 | 2.8e-06 | SCAP Beta-propeller |
| WD40_Prp19 | PF24814 | 183 - 276 | 5e-16 | Prp19 WD40 domain |
| Beta-prop_THOC3 | PF25174 | 184 - 296 | 1.6e-16 | THOC3 beta-propeller domain |
| Beta-prop_CAF1B_HIR1 | PF24105 | 197 - 265 | 1.5e-06 | CAF1B/HIR1 beta-propeller domain |
| Beta-prop_WDR75_1st | PF23869 | 198 - 267 | 1.8e-06 | WD repeat-containing protein 75 first beta-propeller |
| WD40_CDC20-Fz | PF24807 | 198 - 289 | 6.6e-09 | CDC20/Fizzy WD40 domain |
| WD40_WDHD1_1st | PF24817 | 198 - 320 | 4.2e-12 | WDHD1 first WD40 domain |
| Beta-prop_EML_2 | PF23414 | 199 - 296 | 3.6e-09 | Echinoderm microtubule-associated protein second beta-propeller |
| WD40_Gbeta | PF25391 | 200 - 293 | 6.5e-10 | G protein beta WD-40 repeat protein |
| Beta-prop_WDR90_POC16_2nd | PF23393 | 201 - 258 | 2.6e-07 | WDR90/POC16, second beta-propeller |
| Beta-prop_WDR36-Utp21_2nd | PF25168 | 206 - 261 | 8e-07 | WDR36/Utp21 second beta-propeller domain |
| WD40 | PF00400 | 220 - 256 | 2.1e-11 | WD domain, G-beta repeat |
| Beta-prop_EML_2 | PF23414 | 234 - 298 | 5.5e-07 | Echinoderm microtubule-associated protein second beta-propeller |
| B-prop_COPA_B_2nd | PF04053 | 319 - 578 | 6.5e-89 | COPA/B second beta-propeller |
| TPR_COPA_B | PF23953 | 595 - 775 | 6.2e-82 | COPA/B TPR domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 731 |
| AccI | GTMKAC | 1 cut(s) | 249 |
| AciI | CCGC | 3 cut(s) | 853, 1506, 2463 |
| AclWI | GGATC | 4 cut(s) | 72, 622, 1916, 2366 |
| AcoI | YGGCCR | 2 cut(s) | 898, 2058 |
| AcsI | RAATTY | 5 cut(s) | 191, 532, 963, 1181, 2389 |
| AcuI | CTGAAG | 3 cut(s) | 2151, 2397, 2643 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 783, 1095, 2338, 2512, 2656 |
| AflII | CTTAAG | 1 cut(s) | 1075 |
| AflIII | ACRYGT | 2 cut(s) | 234, 1570 |
| AjnI | CCWGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 928, 960, 2516, 2548 |
| AleI | CACNNNNGTG | 2 cut(s) | 1991, 2507 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1144, 1176 |
| Alw21I | GWGCWC | 2 cut(s) | 1331, 1854 |
| Alw26I | GTCTC | 4 cut(s) | 1492, 1621, 1800, 2435 |
| AlwI | GGATC | 4 cut(s) | 72, 622, 1916, 2366 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 113 |
| AoxI | GGCC | 5 cut(s) | 679, 898, 1359, 1818, 2058 |
| ApeKI | GCWGC | 4 cut(s) | 2264, 2354, 2435, 2618 |
| ApoI | RAATTY | 5 cut(s) | 191, 532, 963, 1181, 2389 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 648, 680 |
| AseI | ATTAAT | 1 cut(s) | 2703 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1159, 2393 |
| AspS9I | GGNCC | 3 cut(s) | 1359, 1818, 2086 |
| AsuHPI | GGTGA | 6 cut(s) | 602, 1436, 1661, 2036, 2494, 2609 |
| AsuII | TTCGAA | 2 cut(s) | 760, 1229 |
| AvaII | GGWCC | 1 cut(s) | 2086 |
| AxyI | CCTNAGG | 1 cut(s) | 2259 |
| BauI | CACGAG | 1 cut(s) | 1884 |
| BbsI | GAAGAC | 1 cut(s) | 1516 |
| Bbv12I | GWGCWC | 2 cut(s) | 1331, 1854 |
| BbvI | GCAGC | 4 cut(s) | 2251, 2341, 2422, 2605 |
| BceAI | ACGGC | 2 cut(s) | 885, 1819 |
| BciT130I | CCWGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| BciVI | GTATCC | 3 cut(s) | 827, 2247, 2394 |
| BclI | TGATCA | 1 cut(s) | 622 |
| BcoDI | GTCTC | 4 cut(s) | 1492, 1621, 1800, 2435 |
| BfaI | CTAG | 2 cut(s) | 515, 1943 |
| BfmI | CTRYAG | 3 cut(s) | 1437, 1515, 2436 |
| BfrI | CTTAAG | 1 cut(s) | 1075 |
| BfuI | GTATCC | 3 cut(s) | 827, 2247, 2394 |
| BisI | GCNGC | 4 cut(s) | 2265, 2355, 2436, 2619 |
| BlpI | GCTNAGC | 1 cut(s) | 951 |
| BlsI | GCNGC | 4 cut(s) | 2266, 2356, 2437, 2620 |
| BmcAI | AGTACT | 1 cut(s) | 1225 |
| Bme1390I | CCNGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| Bme18I | GGWCC | 1 cut(s) | 2086 |
| BmgT120I | GGNCC | 3 cut(s) | 1359, 1818, 2086 |
| BmiI | GGNNCC | 7 cut(s) | 226, 520, 880, 2550, 2583, 2648, 2749 |
| BmrFI | CCNGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| BmsI | GCATC | 7 cut(s) | 79, 491, 535, 1528, 1788, 2116, 2662 |
| BpiI | GAAGAC | 1 cut(s) | 1516 |
| BpmI | CTGGAG | 3 cut(s) | 243, 1171, 1645 |
| Bpu10I | CCTNAGC | 3 cut(s) | 633, 717, 2333 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 951 |
| Bpu14I | TTCGAA | 2 cut(s) | 760, 1229 |
| BpuEI | CTTGAG | 2 cut(s) | 809, 2249 |
| BsaAI | YACGTR | 1 cut(s) | 2476 |
| BsaBI | GATNNNNATC | 2 cut(s) | 69, 549 |
| BsaJI | CCNNGG | 4 cut(s) | 83, 144, 2061, 2082 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1144, 1174, 1601, 1604, 1631, 1634 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 783, 1095, 2338, 2512, 2656 |
| Bse1I | ACTGG | 6 cut(s) | 18, 176, 616, 1443, 1585, 2241 |
| Bse21I | CCTNAGG | 1 cut(s) | 2259 |
| Bse3DI | GCAATG | 2 cut(s) | 215, 1329 |
| Bse8I | GATNNNNATC | 2 cut(s) | 69, 549 |
| BseBI | CCWGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| BseDI | CCNNGG | 4 cut(s) | 83, 144, 2061, 2082 |
| BseJI | GATNNNNATC | 2 cut(s) | 69, 549 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 783, 1095, 2338, 2512, 2656 |
| BseMI | GCAATG | 2 cut(s) | 215, 1329 |
| BseNI | ACTGG | 6 cut(s) | 18, 176, 616, 1443, 1585, 2241 |
| BseRI | GAGGAG | 6 cut(s) | 1282, 1609, 2483, 2558, 2561, 2669 |
| BseXI | GCAGC | 4 cut(s) | 2251, 2341, 2422, 2605 |
| BshFI | GGCC | 5 cut(s) | 681, 900, 1361, 1820, 2060 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1331, 1854 |
| BslFI | GGGAC | 4 cut(s) | 124, 398, 656, 1493 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 783, 1095, 2338, 2512, 2656 |
| BsmAI | GTCTC | 4 cut(s) | 1492, 1621, 1800, 2435 |
| BsmFI | GGGAC | 4 cut(s) | 124, 398, 656, 1493 |
| BsmI | GAATGC | 3 cut(s) | 769, 1370, 2186 |
| BsnI | GGCC | 5 cut(s) | 681, 900, 1361, 1820, 2060 |
| Bsp119I | TTCGAA | 2 cut(s) | 760, 1229 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1331, 1854 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 951 |
| Bsp19I | CCATGG | 3 cut(s) | 83, 144, 2082 |
| BspACI | CCGC | 3 cut(s) | 853, 1506, 2463 |
| BspANI | GGCC | 5 cut(s) | 681, 900, 1361, 1820, 2060 |
| BspHI | TCATGA | 1 cut(s) | 2575 |
| BspLI | GGNNCC | 7 cut(s) | 226, 520, 880, 2550, 2583, 2648, 2749 |
| BspMAI | CTGCAG | 1 cut(s) | 2440 |
| BspPI | GGATC | 4 cut(s) | 72, 622, 1916, 2366 |
| BspT104I | TTCGAA | 2 cut(s) | 760, 1229 |
| BspTI | CTTAAG | 1 cut(s) | 1075 |
| BsrDI | GCAATG | 2 cut(s) | 215, 1329 |
| BsrI | ACTGG | 6 cut(s) | 18, 176, 616, 1443, 1585, 2241 |
| BssECI | CCNNGG | 4 cut(s) | 83, 144, 2061, 2082 |
| BssNAI | GTATAC | 1 cut(s) | 250 |
| BssSI | CACGAG | 1 cut(s) | 1884 |
| BssT1I | CCWWGG | 3 cut(s) | 83, 144, 2082 |
| Bst1107I | GTATAC | 1 cut(s) | 250 |
| Bst2BI | CACGAG | 1 cut(s) | 1884 |
| Bst2UI | CCWGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| Bst4CI | ACNGT | 6 cut(s) | 115, 757, 973, 1396, 1640, 1862 |
| Bst6I | CTCTTC | 7 cut(s) | 836, 1259, 1495, 2214, 2373, 2535, 2718 |
| BstAFI | CTTAAG | 1 cut(s) | 1075 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2156 |
| BstBAI | YACGTR | 1 cut(s) | 2476 |
| BstBI | TTCGAA | 2 cut(s) | 760, 1229 |
| BstC8I | GCNNGC | 3 cut(s) | 206, 2079, 2148 |
| BstDSI | CCRYGG | 3 cut(s) | 83, 144, 2082 |
| BstEII | GGTNACC | 2 cut(s) | 1006, 1654 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2336, 2510 |
| BstMAI | GTCTC | 4 cut(s) | 1492, 1621, 1800, 2435 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 370, 2039, 2156, 2273 |
| BstNI | CCWGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| BstNSI | RCATGY | 3 cut(s) | 238, 1056, 2081 |
| BstPI | GGTNACC | 2 cut(s) | 1006, 1654 |
| BstSCI | CCNGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| BstSFI | CTRYAG | 3 cut(s) | 1437, 1515, 2436 |
| BstSNI | TACGTA | 1 cut(s) | 2476 |
| BstV1I | GCAGC | 4 cut(s) | 2251, 2341, 2422, 2605 |
| BstV2I | GAAGAC | 1 cut(s) | 1516 |
| BstX2I | RGATCY | 2 cut(s) | 64, 614 |
| BstYI | RGATCY | 2 cut(s) | 64, 614 |
| BstZ17I | GTATAC | 1 cut(s) | 250 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2259 |
| BsuI | GTATCC | 3 cut(s) | 827, 2247, 2394 |
| BsuRI | GGCC | 5 cut(s) | 681, 900, 1361, 1820, 2060 |
| BtgI | CCRYGG | 3 cut(s) | 83, 144, 2082 |
| BtsI | GCAGTG | 1 cut(s) | 627 |
| BtsIMutI | CAGTG | 4 cut(s) | 627, 1450, 1867, 1986 |
| Cac8I | GCNNGC | 3 cut(s) | 206, 2079, 2148 |
| CaiI | CAGNNNCTG | 1 cut(s) | 113 |
| CciI | TCATGA | 1 cut(s) | 2575 |
| Cfr13I | GGNCC | 3 cut(s) | 1359, 1818, 2086 |
| CseI | GACGC | 1 cut(s) | 145 |
| DraI | TTTAAA | 1 cut(s) | 2073 |
| EaeI | YGGCCR | 2 cut(s) | 898, 2058 |
| Eam1104I | CTCTTC | 7 cut(s) | 836, 1259, 1495, 2214, 2373, 2535, 2718 |
| EarI | CTCTTC | 7 cut(s) | 836, 1259, 1495, 2214, 2373, 2535, 2718 |
| Eco105I | TACGTA | 1 cut(s) | 2476 |
| Eco130I | CCWWGG | 3 cut(s) | 83, 144, 2082 |
| Eco47I | GGWCC | 1 cut(s) | 2086 |
| Eco57I | CTGAAG | 3 cut(s) | 2151, 2397, 2643 |
| Eco81I | CCTNAGG | 1 cut(s) | 2259 |
| Eco91I | GGTNACC | 2 cut(s) | 1006, 1654 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2336, 2510 |
| EcoO65I | GGTNACC | 2 cut(s) | 1006, 1654 |
| EcoRII | CCWGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| EcoT14I | CCWWGG | 3 cut(s) | 83, 144, 2082 |
| ErhI | CCWWGG | 3 cut(s) | 83, 144, 2082 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2211, 2243, 2400, 2432 |
| FaqI | GGGAC | 4 cut(s) | 124, 398, 656, 1493 |
| FauI | CCCGC | 2 cut(s) | 846, 2470 |
| FbaI | TGATCA | 1 cut(s) | 622 |
| FblI | GTMKAC | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 4 cut(s) | 2265, 2355, 2436, 2619 |
| Fsp4HI | GCNGC | 4 cut(s) | 2265, 2355, 2436, 2619 |
| FspBI | CTAG | 2 cut(s) | 515, 1943 |
| GluI | GCNGC | 4 cut(s) | 2265, 2355, 2436, 2619 |
| GsuI | CTGGAG | 3 cut(s) | 243, 1171, 1645 |
| HaeIII | GGCC | 5 cut(s) | 681, 900, 1361, 1820, 2060 |
| HgaI | GACGC | 1 cut(s) | 145 |
| HincII | GTYRAC | 1 cut(s) | 1194 |
| HindII | GTYRAC | 1 cut(s) | 1194 |
| HinfI | GANTC | 8 cut(s) | 511, 1375, 1789, 1880, 2003, 2360, 2426, 2678 |
| HphI | GGTGA | 6 cut(s) | 602, 1436, 1661, 2036, 2494, 2609 |
| Hpy166II | GTNNAC | 5 cut(s) | 250, 976, 1194, 1758, 2479 |
| Hpy8I | GTNNAC | 5 cut(s) | 250, 976, 1194, 1758, 2479 |
| HpyAV | CCTTC | 6 cut(s) | 410, 671, 869, 2126, 2636, 2738 |
| HpyCH4III | ACNGT | 6 cut(s) | 115, 757, 973, 1396, 1640, 1862 |
| HpyCH4IV | ACGT | 3 cut(s) | 539, 1570, 2475 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 370, 2039, 2156, 2273 |
| HpySE526I | ACGT | 3 cut(s) | 539, 1570, 2475 |
| Ksp22I | TGATCA | 1 cut(s) | 622 |
| LmnI | GCTCC | 5 cut(s) | 224, 524, 992, 2548, 2646 |
| Lsp1109I | GCAGC | 4 cut(s) | 2251, 2341, 2422, 2605 |
| LweI | GCATC | 7 cut(s) | 79, 491, 535, 1528, 1788, 2116, 2662 |
| MaeI | CTAG | 2 cut(s) | 515, 1943 |
| MaeII | ACGT | 3 cut(s) | 539, 1570, 2475 |
| MaeIII | GTNAC | 8 cut(s) | 163, 171, 442, 1006, 1390, 1445, 1654, 2232 |
| MfeI | CAATTG | 1 cut(s) | 2531 |
| MflI | RGATCY | 2 cut(s) | 64, 614 |
| MhlI | GDGCHC | 2 cut(s) | 1331, 1854 |
| MlyI | GAGTC | 3 cut(s) | 1783, 2012, 2369 |
| MmeI | TCCRAC | 3 cut(s) | 98, 522, 723 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1159, 2393 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1302, 1860, 1991, 2507 |
| MspCI | CTTAAG | 1 cut(s) | 1075 |
| MspR9I | CCNGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| MunI | CAATTG | 1 cut(s) | 2531 |
| Mva1269I | GAATGC | 3 cut(s) | 769, 1370, 2186 |
| MvaI | CCWGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 370, 2039, 2156, 2273 |
| NcoI | CCATGG | 3 cut(s) | 83, 144, 2082 |
| NlaIV | GGNNCC | 7 cut(s) | 226, 520, 880, 2550, 2583, 2648, 2749 |
| NmeAIII | GCCGAG | 1 cut(s) | 2086 |
| NmuCI | GTSAC | 3 cut(s) | 163, 442, 1445 |
| NspI | RCATGY | 3 cut(s) | 238, 1056, 2081 |
| NspV | TTCGAA | 2 cut(s) | 760, 1229 |
| OliI | CACNNNNGTG | 2 cut(s) | 1991, 2507 |
| PaeI | GCATGC | 1 cut(s) | 2081 |
| PagI | TCATGA | 1 cut(s) | 2575 |
| PciI | ACATGT | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2718 |
| PctI | GAATGC | 3 cut(s) | 769, 1370, 2186 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1159, 2393 |
| PfeI | GAWTC | 5 cut(s) | 511, 1375, 1880, 2426, 2678 |
| PflFI | GACNNNGTC | 1 cut(s) | 1484 |
| PfoI | TCCNGGA | 2 cut(s) | 1257, 1622 |
| PkrI | GCNGC | 4 cut(s) | 2266, 2356, 2437, 2620 |
| PleI | GAGTC | 3 cut(s) | 1783, 2011, 2368 |
| PpsI | GAGTC | 3 cut(s) | 1783, 2011, 2368 |
| Ppu21I | YACGTR | 1 cut(s) | 2476 |
| PscI | ACATGT | 1 cut(s) | 234 |
| PshBI | ATTAAT | 1 cut(s) | 2703 |
| PsiI | TTATAA | 1 cut(s) | 731 |
| Psp6I | CCWGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| PspEI | GGTNACC | 2 cut(s) | 1006, 1654 |
| PspGI | CCWGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| PspN4I | GGNNCC | 7 cut(s) | 226, 520, 880, 2550, 2583, 2648, 2749 |
| PspPI | GGNCC | 3 cut(s) | 1359, 1818, 2086 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1932, 1964 |
| PstI | CTGCAG | 1 cut(s) | 2440 |
| PstNI | CAGNNNCTG | 1 cut(s) | 113 |
| PsuI | RGATCY | 2 cut(s) | 64, 614 |
| PsyI | GACNNNGTC | 1 cut(s) | 1484 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1302, 1860, 1991, 2507 |
| SatI | GCNGC | 4 cut(s) | 2265, 2355, 2436, 2619 |
| Sau96I | GGNCC | 3 cut(s) | 1359, 1818, 2086 |
| ScaI | AGTACT | 1 cut(s) | 1225 |
| SchI | GAGTC | 3 cut(s) | 1783, 2012, 2369 |
| ScrFI | CCNGG | 5 cut(s) | 1150, 1259, 1624, 2292, 2651 |
| SduI | GDGCHC | 2 cut(s) | 1331, 1854 |
| SfaNI | GCATC | 7 cut(s) | 79, 491, 535, 1528, 1788, 2116, 2662 |
| SfcI | CTRYAG | 3 cut(s) | 1437, 1515, 2436 |
| SfuI | TTCGAA | 2 cut(s) | 760, 1229 |
| SinI | GGWCC | 1 cut(s) | 2086 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1302, 1860, 1991, 2507 |
| SmlI | CTYRAG | 3 cut(s) | 788, 1075, 2228 |
| SmoI | CTYRAG | 3 cut(s) | 788, 1075, 2228 |
| SnaBI | TACGTA | 1 cut(s) | 2476 |
| SphI | GCATGC | 1 cut(s) | 2081 |
| SsiI | CCGC | 3 cut(s) | 853, 1506, 2463 |
| SspMI | CTAG | 2 cut(s) | 515, 1943 |
| StyD4I | CCNGG | 5 cut(s) | 1148, 1257, 1622, 2290, 2649 |
| StyI | CCWWGG | 3 cut(s) | 83, 144, 2082 |
| TaaI | ACNGT | 6 cut(s) | 115, 757, 973, 1396, 1640, 1862 |
| TaiI | ACGT | 3 cut(s) | 542, 1573, 2478 |
| TaqI | TCGA | 8 cut(s) | 573, 760, 1229, 1276, 1779, 2212, 2278, 2397 |
| TaqII | GACCGA | 1 cut(s) | 1692 |
| TatI | WGTACW | 4 cut(s) | 401, 1125, 1223, 1686 |
| TfiI | GAWTC | 5 cut(s) | 511, 1375, 1880, 2426, 2678 |
| TscAI | CASTG | 4 cut(s) | 634, 1450, 1867, 1993 |
| TseFI | GTSAC | 3 cut(s) | 163, 442, 1445 |
| TseI | GCWGC | 4 cut(s) | 2264, 2354, 2435, 2618 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 442, 1445 |
| TspGWI | ACGGA | 2 cut(s) | 1211, 2699 |
| TspRI | CASTG | 4 cut(s) | 634, 1450, 1867, 1993 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1484 |
| Vha464I | CTTAAG | 1 cut(s) | 1075 |
| VpaK11BI | GGWCC | 1 cut(s) | 2086 |
| VspI | ATTAAT | 1 cut(s) | 2703 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2336, 2510 |
| XapI | RAATTY | 5 cut(s) | 191, 532, 963, 1181, 2389 |
| XceI | RCATGY | 3 cut(s) | 238, 1056, 2081 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 81 |
| XmiI | GTMKAC | 1 cut(s) | 249 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1159, 2393 |
| XspI | CTAG | 2 cut(s) | 515, 1943 |
| ZrmI | AGTACT | 1 cut(s) | 1225 |