Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001221

Physical Location & Seq

Genomic Coordinates Reverse (-)

5411278 .. 5418632

Gene Structure 7355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGCCTCTCAGACTAGATATCAAGAGAAAGTTTGCTCAACGATCAGAGAGAGTCAAATCTGTTGATCTGCATCCTACTGAACCATGGATTCTAGCAAGTTTGTATTCTGGAACCGTGTGTATTTGGAACTACCAGACACAGACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAAAGTATTTGAGGCTCATTCGGATTACATTAGGTGTGTAGCTGTCCATCCGACCCTTCCATATGTGCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGACTGGGAAAACGGTTGGGCTTGTACTCAGATATTTGAGGGACATTCGCACTATGTGATGCAAGTGGTATTTAATCCAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGGTATGGGACTATCAAACCAAAAGTTGTGTCCAGACGCTAGATGGGCACACACACAATGTTTCTGCCGTATGTTTCCATCCAGAGCTTCCAATAATAATCACAGGTTCTGAGGATGGCACTGTTCGCATTTGGCACGCCACTACCTACAGGCTAGAAAACACATTAAATTATGGTCTCGAGAGAGTTTGGGCCATTGGTTACATCAAAAGTTCTCGGCGGGTTGTGATTGGATATGATGAAGGAACCATCATGGTTAAACTTGGACGAGAAATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAAGCTTGAAGCACAACCCTAATGGGAGGTTTGTCGTAGTCTGCGGTGATGGAGAGTACATAATCTACACTGCTTTGGCGTGGAGAAATAGATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGGAAAGGAAGAGTATCCGGCCTACTTTCTCAGCTGAGAAGATTTTTGGAGGAACCTTGTTAGCAATGTGTTCGAATGATTTCATCTGCTTCTATGATTGGGCCGAATGCAGGCTGATTCAACAAATTGATGTCACCGTAAAGAATCTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCTTGAAGTACAATCGAGAGTTGGTTTCCTCGCATTTTGATAGTGGAAGACCAACTGATGAAGAGGGTGTTGAGGATGCTTTTGAGGTTCTCCACGAGAATGATGAACGTGTTAGGACCGGTATATGGGTTGGGGACTGCTTCATTTACAACAACTCTTCTTGGAAGCTTAACTATTGTGTTGGAGGCGAGGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAATGTCATAGGATATACCCTGCTGCTTAGCCTGATTGAATACAAGACTCTTGTGATGCGAGGCGATTTGGATAGAGCCAATCAAATTTTACCTACAATTCCTAAAGAGCAGCATAACAATGTTGCTCATTTCTTGGAATCTCGGGGAATGATTGAAGATGCTTTAGAAATTGCGACAGATCCAGACTACAAATTTGATCTGGCCATACAACTGGGTAGACTTGAAATTGCAAAGGAAATTGCTGAAGAAGTACAGAGCGAGTCTAAATGGAAGCAGTTAGGAGAGTTAGCCATGTCCTCGGGGAAGCTGCAATTGGCCGAGGATTGCATGAAGTACGCTATGGATTTGAGTGGTTTGTTACTACTATATTCTTCTTTGGGAGATGCTGAAGGGGTGTCAAAACTTGCATGCCTTGCTAAGGAACAGGGGAAGAACAATGTTGCCTTTCTTTGCTTATTTACGCTGGGTAGATTGGAAGATTGTCTGCAGTTATTGGTGGAGAGTAACCGGATACCAGAAGCTGCTCTGATGGCACGTTCTTATCTTCCAAGCAAAGTTTCGGAGATAGTAGCTCTATGGAGGGAAGATCTCAGCAAGGTTAATCCAAAAGCAGCTGAATCTTTAGCTGATCCTGAAGAGTACTCAAATCTTTTTGAGGATTGGCAAGTTGCTCTTTCTGTTGAAGCGAACACTGCAGAGACAAGGGGAGTTTATACCGCTGCAGAAAATTATCCATCCCATGCCGATAAACCTTCCATTACCCTTGTGGAAGCCTTTAGAAACCTGCAAGTTGAAGCAGAGGAATCACTTGAAAATGGAAACATCGATCACGAGGTAGCAGAAGAAAACGGTCATGTAGAGAATGAAGGAGATGAAGAGGAACAACAGGAAGAAGAAGTGAATGAAGAAGAGGGAGTTGTGGATGCAGACTCTACGGACGGTGCTGTACTTGTTAATGGAAGTGAGGTGCTTACGCCACATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

909

Amino Acids

102.48

Weight (kDa)

4.84

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	10 - 155	2.6e-17	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	12 - 171	1e-15	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	14 - 154	4.6e-21	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	15 - 131	6.3e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	16 - 184	2.6e-20	Prp19 WD40 domain
WDR55	PF24796	16 - 199	2.6e-15	WDR55
Beta-prop_EML_2	PF23414	20 - 172	7.7e-16	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	20 - 192	2.6e-24	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	31 - 170	8.7e-07	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	34 - 210	6.2e-15	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	35 - 226	1e-22	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	50 - 170	2.6e-07	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	58 - 131	1.5e-11	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	59 - 194	3.2e-27	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	65 - 171	3.3e-08	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	70 - 260	2.8e-14	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	70 - 174	3.9e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	91 - 127	5.4e-08	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	118 - 180	8.9e-07	WDHD1 first WD40 domain
WD40	PF00400	133 - 171	8.8e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	135 - 296	6.5e-28	WDR3 first beta-propeller domain
EIF3I	PF24805	138 - 228	7.2e-06	EIF3I
Beta-prop_RIG_2nd	PF23775	139 - 246	4.5e-06	RIG second beta-propeller
Beta-prop_WDR3_2nd	PF25172	140 - 260	4.3e-15	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	154 - 238	6.1e-06	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	154 - 293	3.4e-30	WDR5 beta-propeller domain
WDR55	PF24796	157 - 296	1.3e-13	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	160 - 262	6.8e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML	PF23409	164 - 263	8e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	166 - 256	1.8e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	177 - 215	4.9e-07	WD domain, G-beta repeat
Beta-prop_SCAP	PF24017	183 - 260	2.4e-06	SCAP Beta-propeller
WD40_Prp19	PF24814	183 - 269	8.4e-16	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	184 - 295	2.3e-16	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	197 - 265	1.6e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	198 - 267	3.2e-06	WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz	PF24807	198 - 288	8.2e-09	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	198 - 311	5.2e-12	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	199 - 296	5.2e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	201 - 292	9.7e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd	PF23393	201 - 260	2.8e-07	WDR90/POC16, second beta-propeller
WD40	PF00400	220 - 256	3.2e-11	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	319 - 578	1e-90	COPA/B second beta-propeller
TPR_COPA_B	PF23953	595 - 775	5.4e-82	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52360 AT1G52360 AT1G52360 AT1G52360 AT1G79990 AT1G79990 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980
fragaria_vesca	FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010
malus_domestica	MD09G1214300.v1.1 MD15G1188300.v1.1 MD17G1196600.v1.1
prunus_persica	Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1
pyrus_communis	pycom02g04220 pycom09g13110 pycom15g16880 pycom17g20170
rosa_chinensis	RchiOBHm_Chr2g0090881 RchiOBHm_Chr2g0137661
rosa_laevigata	RLG00000016153 RLG00000019667
rosa_multiflora	Rmu_sc0000765.1_g000033 Rmu_sc0000792.1_g000012
rosa_roxburghii	Rroxscaffold_2G00106960 Rroxscaffold_2G00150770
rosa_rugosa	Rorug02G0010700 Rorug02G0010800 Rorug02G0343900
rosa_samantha	Rh2AG057000 Rh2AG391700 Rh2BG399200 Rh2CG378600 Rh2DG056400 Rh2DG414300
rosa_wichuraiana	Rw2G005240 Rw2G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	986, 2535
AccBSI	CCGCTC	1 cut(s)	227
AccI	GTMKAC	3 cut(s)	249, 1731, 1960
AccII	CGCG	1 cut(s)	202
AciI	CCGC	9 cut(s)	200, 227, 853, 933, 972, 1113, 1211, 1678, 2460
AclWI	GGATC	2 cut(s)	1916, 2366
AcoI	YGGCCR	3 cut(s)	186, 1944, 2058
AcsI	RAATTY	8 cut(s)	532, 906, 963, 1181, 1252, 1739, 1827, 1934
AcuI	CTGAAG	3 cut(s)	2007, 2151, 2397
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	9 cut(s)	239, 403, 496, 1127, 1472, 1995, 2078, 2384, 2691
AfiI	CCNNNNNNNGG	4 cut(s)	1368, 1587, 1717, 2161
AflIII	ACRYGT	1 cut(s)	1570
AgeI	ACCGGT	1 cut(s)	1580
AjnI	CCWGG	2 cut(s)	1176, 1257
AjuI	GAANNNNNNNTTGG	4 cut(s)	2039, 2071, 2284, 2316
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
Alw26I	GTCTC	2 cut(s)	815, 2435
AlwI	GGATC	2 cut(s)	1916, 2366
AlwNI	CAGNNNCTG	2 cut(s)	743, 2264
Ama87I	CYCGRG	3 cut(s)	812, 1884, 2041
AoxI	GGCC	7 cut(s)	186, 825, 1174, 1277, 1359, 1944, 2058
ApeKI	GCWGC	6 cut(s)	1765, 1852, 2050, 2264, 2354, 2462
ApoI	RAATTY	8 cut(s)	532, 906, 963, 1181, 1252, 1739, 1827, 1934
ArsI	GACNNNNNNTTYG	4 cut(s)	648, 680, 1919, 1951
AsiGI	ACCGGT	1 cut(s)	1580
Asp700I	GAANNNNTTC	2 cut(s)	1023, 1337
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	5 cut(s)	825, 1050, 1359, 1578, 1675
AsuC2I	CCSGG	1 cut(s)	1718
AsuHPI	GGTGA	5 cut(s)	175, 602, 1127, 1384, 1436
AsuII	TTCGAA	1 cut(s)	1331
AsuNHI	GCTAGC	1 cut(s)	917
AvaI	CYCGRG	3 cut(s)	812, 1884, 2041
AvaII	GGWCC	3 cut(s)	1050, 1578, 1675
BaeGI	GKGCMC	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	1946
BauI	CACGAG	2 cut(s)	1556, 2573
BbsI	GAAGAC	1 cut(s)	1516
BbvI	GCAGC	6 cut(s)	1752, 1864, 2037, 2251, 2366, 2449
BccI	CCATC	9 cut(s)	330, 671, 720, 743, 890, 1007, 1112, 2266, 2485
BceAI	ACGGC	1 cut(s)	686
BcgI	CGANNNNNNTGC	2 cut(s)	1311, 1345
BciT130I	CCWGG	2 cut(s)	1178, 1259
BciVI	GTATCC	2 cut(s)	1283, 2247
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	1718
BcoDI	GTCTC	2 cut(s)	815, 2435
BfaI	CTAG	7 cut(s)	14, 92, 674, 788, 918, 1443, 2728
BfmI	CTRYAG	4 cut(s)	781, 2228, 2436, 2463
BfuAI	ACCTGC	2 cut(s)	986, 2535
BfuI	GTATCC	2 cut(s)	1283, 2247
BglII	AGATCT	2 cut(s)	1160, 2329
BisI	GCNGC	6 cut(s)	1766, 1853, 2051, 2265, 2355, 2463
BlpI	GCTNAGC	2 cut(s)	951, 1769
BlsI	GCNGC	6 cut(s)	1767, 1854, 2052, 2266, 2356, 2464
BmcAI	AGTACT	1 cut(s)	2384
Bme1390I	CCNGG	3 cut(s)	1178, 1259, 1718
Bme18I	GGWCC	3 cut(s)	1050, 1578, 1675
BmeT110I	CYCGRG	3 cut(s)	812, 1884, 2041
BmgT120I	GGNCC	5 cut(s)	825, 1050, 1359, 1578, 1675
BmiI	GGNNCC	5 cut(s)	112, 520, 880, 1051, 1312
BmrFI	CCNGG	3 cut(s)	1178, 1259, 1718
BmrI	ACTGGG	2 cut(s)	391, 1964
BmsI	GCATC	8 cut(s)	79, 426, 535, 1528, 1788, 1891, 2116, 2656
BmtI	GCTAGC	1 cut(s)	921
BmuI	ACTGGG	2 cut(s)	391, 1964
BpiI	GAAGAC	1 cut(s)	1516
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	633, 2160
Bpu1102I	GCTNAGC	2 cut(s)	951, 1769
Bpu14I	TTCGAA	1 cut(s)	1331
BpuMI	CCSGG	1 cut(s)	1718
Bsa29I	ATCGAT	1 cut(s)	2568
BsaBI	GATNNNNATC	3 cut(s)	69, 549, 1062
BsaI	GGTCTC	1 cut(s)	815
BsaJI	CCNNGG	3 cut(s)	83, 2040, 2061
BsaWI	WCCGGW	2 cut(s)	1580, 2250
BsaXI	ACNNNNNCTCC	2 cut(s)	1638, 1668
Bsc4I	CCNNNNNNNGG	4 cut(s)	1368, 1587, 1717, 2161
Bse118I	RCCGGY	2 cut(s)	611, 1580
Bse1I	ACTGG	5 cut(s)	176, 386, 477, 546, 1959
Bse3DI	GCAATG	3 cut(s)	215, 1329, 1437
Bse8I	GATNNNNATC	3 cut(s)	69, 549, 1062
BseBI	CCWGG	2 cut(s)	1178, 1259
BseCI	ATCGAT	1 cut(s)	2568
BseDI	CCNNGG	3 cut(s)	83, 2040, 2061
BseJI	GATNNNNATC	3 cut(s)	69, 549, 1062
BseLI	CCNNNNNNNGG	4 cut(s)	1368, 1587, 1717, 2161
BseMI	GCAATG	3 cut(s)	215, 1329, 1437
BseMII	CTCAG	7 cut(s)	22, 419, 735, 1188, 1284, 1302, 2347
BseNI	ACTGG	5 cut(s)	176, 386, 477, 546, 1959
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	6 cut(s)	1752, 1864, 2037, 2251, 2366, 2449
BseYI	CCCAGC	1 cut(s)	2206
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	7 cut(s)	188, 827, 1176, 1279, 1361, 1946, 2060
BshTI	ACCGGT	1 cut(s)	1580
BshVI	ATCGAT	1 cut(s)	2568
BsiHKCI	CYCGRG	3 cut(s)	812, 1884, 2041
BsiSI	CCGG	5 cut(s)	612, 1276, 1581, 1717, 2251
BslFI	GGGAC	5 cut(s)	392, 432, 656, 1063, 1610
BslI	CCNNNNNNNGG	4 cut(s)	1368, 1587, 1717, 2161
BsmAI	GTCTC	2 cut(s)	815, 2435
BsmFI	GGGAC	5 cut(s)	392, 432, 656, 1063, 1610
BsmI	GAATGC	1 cut(s)	1370
BsnI	GGCC	7 cut(s)	188, 827, 1176, 1279, 1361, 1946, 2060
Bso31I	GGTCTC	1 cut(s)	815
BsoBI	CYCGRG	3 cut(s)	812, 1884, 2041
Bsp119I	TTCGAA	1 cut(s)	1331
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp1407I	TGTACA	1 cut(s)	237
Bsp1720I	GCTNAGC	2 cut(s)	951, 1769
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	9 cut(s)	200, 227, 853, 933, 972, 1113, 1211, 1678, 2460
BspANI	GGCC	7 cut(s)	188, 827, 1176, 1279, 1361, 1946, 2060
BspCNI	CTCAG	7 cut(s)	21, 418, 736, 1189, 1285, 1301, 2346
BspDI	ATCGAT	1 cut(s)	2568
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	5 cut(s)	112, 520, 880, 1051, 1312
BspMAI	CTGCAG	3 cut(s)	2232, 2440, 2467
BspMI	ACCTGC	2 cut(s)	986, 2535
BspOI	GCTAGC	1 cut(s)	921
BspPI	GGATC	2 cut(s)	1916, 2366
BspT104I	TTCGAA	1 cut(s)	1331
BspTNI	GGTCTC	1 cut(s)	815
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	3 cut(s)	215, 1329, 1437
BsrFI	RCCGGY	2 cut(s)	611, 1580
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	5 cut(s)	176, 386, 477, 546, 1959
BssAI	RCCGGY	2 cut(s)	611, 1580
BssECI	CCNNGG	3 cut(s)	83, 2040, 2061
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	2 cut(s)	1556, 2573
BssT1I	CCWWGG	1 cut(s)	83
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	2 cut(s)	1556, 2573
Bst2UI	CCWGG	2 cut(s)	1178, 1259
Bst4CI	ACNGT	8 cut(s)	115, 392, 569, 757, 929, 1396, 2594, 2684
Bst6I	CTCTTC	6 cut(s)	1262, 1518, 1624, 2373, 2613, 2646
BstAPI	GCANNNNNTGC	1 cut(s)	2156
BstAUI	TGTACA	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	1331
BstC8I	GCNNGC	5 cut(s)	206, 771, 919, 1370, 2152
BstDSI	CCRYGG	1 cut(s)	83
BstEII	GGTNACC	1 cut(s)	1654
BstENI	CCTNNNNNAGG	1 cut(s)	2159
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	204
BstMAI	GTCTC	2 cut(s)	815, 2435
BstMWI	GCNNNNNNNGC	6 cut(s)	370, 679, 759, 2156, 2273, 2435
BstNI	CCWGG	2 cut(s)	1178, 1259
BstNSI	RCATGY	1 cut(s)	2154
BstPI	GGTNACC	1 cut(s)	1654
BstSCI	CCNGG	3 cut(s)	1176, 1257, 1716
BstSFI	CTRYAG	4 cut(s)	781, 2228, 2436, 2463
BstSLI	GKGCMC	1 cut(s)	684
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	6 cut(s)	1752, 1864, 2037, 2251, 2366, 2449
BstV2I	GAAGAC	1 cut(s)	1516
BstX2I	RGATCY	3 cut(s)	1160, 1921, 2329
BstXI	CCANNNNNNTGG	1 cut(s)	1954
BstYI	RGATCY	3 cut(s)	1160, 1921, 2329
BstZ17I	GTATAC	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	2568
BsuI	GTATCC	2 cut(s)	1283, 2247
BsuRI	GGCC	7 cut(s)	188, 827, 1176, 1279, 1361, 1946, 2060
BsuTUI	ATCGAT	1 cut(s)	2568
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	2 cut(s)	1137, 2433
BtsIMutI	CAGTG	5 cut(s)	484, 539, 753, 1137, 2433
BveI	ACCTGC	2 cut(s)	986, 2535
Cac8I	GCNNGC	5 cut(s)	206, 771, 919, 1370, 2152
CaiI	CAGNNNCTG	2 cut(s)	743, 2264
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	2 cut(s)	611, 1580
Cfr13I	GGNCC	5 cut(s)	825, 1050, 1359, 1578, 1675
ClaI	ATCGAT	1 cut(s)	2568
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	9 cut(s)	238, 402, 495, 1126, 1471, 1994, 2077, 2383, 2690
CspAI	ACCGGT	1 cut(s)	1580
CspCI	CAANNNNNGTGG	2 cut(s)	1056, 1091
CviAII	CATG	8 cut(s)	84, 886, 922, 2035, 2071, 2151, 2483, 2597
CviQI	GTAC	9 cut(s)	238, 402, 495, 1126, 1471, 1994, 2077, 2383, 2690
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	3 cut(s)	186, 1944, 2058
Eam1104I	CTCTTC	6 cut(s)	1262, 1518, 1624, 2373, 2613, 2646
EarI	CTCTTC	6 cut(s)	1262, 1518, 1624, 2373, 2613, 2646
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	815
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	1050, 1578, 1675
Eco57I	CTGAAG	3 cut(s)	2007, 2151, 2397
Eco88I	CYCGRG	3 cut(s)	812, 1884, 2041
Eco91I	GGTNACC	1 cut(s)	1654
EcoNI	CCTNNNNNAGG	1 cut(s)	2159
EcoO109I	RGGNCCY	1 cut(s)	1050
EcoO65I	GGTNACC	1 cut(s)	1654
EcoRI	GAATTC	1 cut(s)	1739
EcoRII	CCWGG	2 cut(s)	1176, 1257
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	8 cut(s)	87, 889, 925, 2038, 2074, 2154, 2486, 2600
FalI	AAGNNNNNCTT	2 cut(s)	2400, 2432
FaqI	GGGAC	5 cut(s)	392, 432, 656, 1063, 1610
FatI	CATG	8 cut(s)	83, 885, 921, 2034, 2070, 2150, 2482, 2596
FauI	CCCGC	1 cut(s)	846
FauNDI	CATATG	2 cut(s)	337, 944
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	3 cut(s)	249, 1731, 1960
Fnu4HI	GCNGC	6 cut(s)	1766, 1853, 2051, 2265, 2355, 2463
Fsp4HI	GCNGC	6 cut(s)	1766, 1853, 2051, 2265, 2355, 2463
FspBI	CTAG	7 cut(s)	14, 92, 674, 788, 918, 1443, 2728
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	1766, 1853, 2051, 2265, 2355, 2463
GsaI	CCCAGC	1 cut(s)	2210
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	7 cut(s)	188, 827, 1176, 1279, 1361, 1946, 2060
HapII	CCGG	5 cut(s)	612, 1276, 1581, 1717, 2251
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	8 cut(s)	87, 889, 925, 2038, 2074, 2154, 2486, 2600
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	3 cut(s)	371, 1072, 1628
HpaII	CCGG	5 cut(s)	612, 1276, 1581, 1717, 2251
HphI	GGTGA	5 cut(s)	175, 602, 1127, 1384, 1436
Hpy166II	GTNNAC	5 cut(s)	250, 565, 1723, 1732, 1961
Hpy8I	GTNNAC	5 cut(s)	250, 565, 1723, 1732, 1961
HpyAV	CCTTC	6 cut(s)	166, 341, 869, 2126, 2505, 2603
HpyCH4III	ACNGT	8 cut(s)	115, 392, 569, 757, 929, 1396, 2594, 2684
HpyCH4IV	ACGT	3 cut(s)	1451, 1570, 2278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	370, 679, 759, 2156, 2273, 2435
HpySE526I	ACGT	3 cut(s)	1451, 1570, 2278
Hsp92II	CATG	8 cut(s)	87, 889, 925, 2038, 2074, 2154, 2486, 2600
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	622
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	6 cut(s)	1752, 1864, 2037, 2251, 2366, 2449
LweI	GCATC	8 cut(s)	79, 426, 535, 1528, 1788, 1891, 2116, 2656
MaeI	CTAG	7 cut(s)	14, 92, 674, 788, 918, 1443, 2728
MaeII	ACGT	3 cut(s)	1451, 1570, 2278
MaeIII	GTNAC	7 cut(s)	163, 833, 998, 1390, 1654, 2100, 2246
MbiI	CCGCTC	1 cut(s)	227
MfeI	CAATTG	1 cut(s)	2054
MflI	RGATCY	3 cut(s)	1160, 1921, 2329
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	1946
MluNI	TGGCCA	1 cut(s)	1946
MlyI	GAGTC	5 cut(s)	60, 570, 1783, 2012, 2666
MmeI	TCCRAC	2 cut(s)	350, 1624
Mox20I	TGGCCA	1 cut(s)	1946
MroXI	GAANNNNTTC	2 cut(s)	1023, 1337
MscI	TGGCCA	1 cut(s)	1946
MseI	TTAA	7 cut(s)	450, 800, 891, 1038, 1632, 2343, 2697
MslI	CAYNNNNRTG	2 cut(s)	1560, 1860
Msp20I	TGGCCA	1 cut(s)	1946
MspA1I	CMGCKG	3 cut(s)	1292, 2357, 2462
MspI	CCGG	5 cut(s)	612, 1276, 1581, 1717, 2251
MspR9I	CCNGG	3 cut(s)	1178, 1259, 1718
MunI	CAATTG	1 cut(s)	2054
Mva1269I	GAATGC	1 cut(s)	1370
MvaI	CCWGG	2 cut(s)	1178, 1259
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	6 cut(s)	370, 679, 759, 2156, 2273, 2435
NciI	CCSGG	1 cut(s)	1718
NcoI	CCATGG	1 cut(s)	83
NdeI	CATATG	2 cut(s)	337, 944
NheI	GCTAGC	1 cut(s)	917
NlaIII	CATG	8 cut(s)	87, 889, 925, 2038, 2074, 2154, 2486, 2600
NlaIV	GGNNCC	5 cut(s)	112, 520, 880, 1051, 1312
NmeAIII	GCCGAG	2 cut(s)	829, 2086
NmuCI	GTSAC	2 cut(s)	163, 1390
NspI	RCATGY	1 cut(s)	2154
NspV	TTCGAA	1 cut(s)	1331
PaeI	GCATGC	1 cut(s)	2154
PaeR7I	CTCGAG	1 cut(s)	812
PctI	GAATGC	1 cut(s)	1370
PdmI	GAANNNNTTC	2 cut(s)	1023, 1337
PfeI	GAWTC	7 cut(s)	88, 511, 1375, 1402, 1880, 2360, 2546
PflFI	GACNNNGTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	1257
PinAI	ACCGGT	1 cut(s)	1580
PkrI	GCNGC	6 cut(s)	1767, 1854, 2052, 2266, 2356, 2464
PleI	GAGTC	5 cut(s)	59, 569, 1783, 2011, 2666
PpsI	GAGTC	5 cut(s)	59, 569, 1783, 2011, 2666
PpuMI	RGGWCCY	1 cut(s)	1050
Psp5II	RGGWCCY	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	1176, 1257
PspEI	GGTNACC	1 cut(s)	1654
PspFI	CCCAGC	1 cut(s)	2206
PspGI	CCWGG	2 cut(s)	1176, 1257
PspN4I	GGNNCC	5 cut(s)	112, 520, 880, 1051, 1312
PspPI	GGNCC	5 cut(s)	825, 1050, 1359, 1578, 1675
PspPPI	RGGWCCY	1 cut(s)	1050
PstI	CTGCAG	3 cut(s)	2232, 2440, 2467
PstNI	CAGNNNCTG	2 cut(s)	743, 2264
PsuI	RGATCY	3 cut(s)	1160, 1921, 2329
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	2 cut(s)	1292, 2357
RsaI	GTAC	9 cut(s)	239, 403, 496, 1127, 1472, 1995, 2078, 2384, 2691
RsaNI	GTAC	9 cut(s)	238, 402, 495, 1126, 1471, 1994, 2077, 2383, 2690
RseI	CAYNNNNRTG	2 cut(s)	1560, 1860
SaqAI	TTAA	7 cut(s)	450, 800, 891, 1038, 1632, 2343, 2697
SatI	GCNGC	6 cut(s)	1766, 1853, 2051, 2265, 2355, 2463
Sau96I	GGNCC	5 cut(s)	825, 1050, 1359, 1578, 1675
ScaI	AGTACT	1 cut(s)	2384
SchI	GAGTC	5 cut(s)	60, 570, 1783, 2012, 2666
ScrFI	CCNGG	3 cut(s)	1178, 1259, 1718
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	8 cut(s)	79, 426, 535, 1528, 1788, 1891, 2116, 2656
SfcI	CTRYAG	4 cut(s)	781, 2228, 2436, 2463
Sfr274I	CTCGAG	1 cut(s)	812
SfuI	TTCGAA	1 cut(s)	1331
SinI	GGWCC	3 cut(s)	1050, 1578, 1675
SlaI	CTCGAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	2 cut(s)	1560, 1860
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SphI	GCATGC	1 cut(s)	2154
SsiI	CCGC	9 cut(s)	200, 227, 853, 933, 972, 1113, 1211, 1678, 2460
SspMI	CTAG	7 cut(s)	14, 92, 674, 788, 918, 1443, 2728
StyD4I	CCNGG	3 cut(s)	1176, 1257, 1716
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	8 cut(s)	115, 392, 569, 757, 929, 1396, 2594, 2684
TaiI	ACGT	3 cut(s)	1454, 1573, 2281
TaqI	TCGA	5 cut(s)	159, 813, 1331, 1477, 2568
TatI	WGTACW	7 cut(s)	237, 401, 1125, 1470, 1993, 2382, 2689
TfiI	GAWTC	7 cut(s)	88, 511, 1375, 1402, 1880, 2360, 2546
Tru1I	TTAA	7 cut(s)	450, 800, 891, 1038, 1632, 2343, 2697
Tru9I	TTAA	7 cut(s)	450, 800, 891, 1038, 1632, 2343, 2697
TscAI	CASTG	5 cut(s)	484, 546, 760, 1144, 2440
TseFI	GTSAC	2 cut(s)	163, 1390
TseI	GCWGC	6 cut(s)	1765, 1852, 2050, 2264, 2354, 2462
Tsp45I	GTSAC	2 cut(s)	163, 1390
TspGWI	ACGGA	3 cut(s)	182, 233, 2693
TspRI	CASTG	5 cut(s)	484, 546, 760, 1144, 2440
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	1050, 1578, 1675
XagI	CCTNNNNNAGG	1 cut(s)	2159
XapI	RAATTY	8 cut(s)	532, 906, 963, 1181, 1252, 1739, 1827, 1934
XceI	RCATGY	1 cut(s)	2154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	674, 2506
XhoI	CTCGAG	1 cut(s)	812
XmiI	GTMKAC	3 cut(s)	249, 1731, 1960
XmnI	GAANNNNTTC	2 cut(s)	1023, 1337
XspI	CTAG	7 cut(s)	14, 92, 674, 788, 918, 1443, 2728
ZrmI	AGTACT	1 cut(s)	2384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.