Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001221

Physical Location & Seq

Genomic Coordinates Forward (+)

11671182 .. 11675163

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGTGCTCAAATGATTTTATTTGCTTTTATGATTGGGCTGAATGCAGGTTAATTCGCCGAATTGATGTAACTGTTAAAAATCTCTATTGGGCTGATAGTGGTGATTTAGTGGCTATTGCCAGTGATACATCATTCTACATCTTGAAATACAATCGGGACGTAGTCTCTTCTTACTTAGATAGTGGAAGACCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAGCTTCTTCATGAAATGAATGAACGTGTCAGGACTGGTTTATGGGTTGGGGATTGTTTCATTTACAACAACTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGCGAGGTAACCACAATGTTTCATTTAGACCGACCAATGTACTTGTTGGGTTATCTTGCCAATCAAAGTCGGGTGTTTCTGATAGACAAAGAGTTCAATGTAATAGGATACACACTACTTCTAAGTTTGATTGAATATAAGACTCTTGTAATGCGTGGAGACATTGAAAGGGCCAATGAAGTTTTGCCTTCAATTCCTAAAGAGCACCATAACAGTGTGGCTCGTTTCTTGGAAACACGAGGTATGATAGAGGAAGCTCTGGAAGTGGCTACCGATCCTGATTACAGATTTGAACTAGCCATACAGCTTGGTAGATTAGAAATTGCGAAGGAAATTGCCACTGAGGTGCAAAGTGAGTCTAAATGGAAGCAGTTAGGTGAATTGGCTATGTCTGCTGGAAAGTTAGACATGGCCGAGGAATGTTTAAAGTATGCCATGGACTTGAGTGGATTATTATTGCTCTATTCTTCTCTTGGAGATGTTGAAGGAATATCAAAACTTGCATCCCTTGCTAAAGAACAAGGGAAGAATAATGTTGCGTACCTTTGTTTATTCATGTTGGGTCGATTGGAAGAGTGCCTTGAGTTACTGGTGGAAAGCAATCGGATACCTGAGGCTGCTTTGATGGCTCGATCATATCTTCCAGGCAAGGTTTCCGAGATAGTAGCTATTTGGAGAAAAGACCTGAGCAAGGTTAATCCAAAAGCTGCTGAGTCTTTGGCTGATCCTGAAGAATATCCCAATTTGTTCGATGATTGGCAAGTTGCCCTTTCTGTGGAATCAAAAGCTGCAGAGACAAGGGGTGTTTACCCTCCCGCAGAGGAGTACATAAACCATGTTGATAAAGCACACATCACCCTTGTGGAGGCTTTCAGGAATATGCAATCGGATGAAGAGGAGCATCTTGACAATGGGGAAGCAAATCATGGGGATGGTGAAGAAAATGGGGAACGGGCTGCTGAAGAACATGATGGAGAAGAAGGTAGCCAGGAGGAGGCTGTTGTGGTGGATGCTGATTCGACGGATGCTGTACTCATCAATGGGAACGAGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAACCTCGTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

474

Amino Acids

53.17

Weight (kDa)

4.44

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52360 AT1G52360 AT1G52360 AT1G52360 AT1G79990 AT1G79990 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980
fragaria_vesca	FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010
malus_domestica	MD09G1214300.v1.1 MD15G1188300.v1.1 MD17G1196600.v1.1
prunus_persica	Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1
pyrus_communis	pycom02g04220 pycom09g13110 pycom15g16880 pycom17g20170
rosa_chinensis	RchiOBHm_Chr2g0090881 RchiOBHm_Chr2g0137661
rosa_laevigata	RLG00000016153 RLG00000019667
rosa_multiflora	Rmu_sc0000765.1_g000033 Rmu_sc0000792.1_g000012
rosa_roxburghii	Rroxscaffold_2G00106960 Rroxscaffold_2G00150770
rosa_rugosa	Rorug02G0010700 Rorug02G0010800 Rorug02G0343900
rosa_samantha	Rh2AG057000 Rh2AG391700 Rh2BG399200 Rh2CG378600 Rh2DG056400 Rh2DG414300
rosa_wichuraiana	Rw2G005240 Rw2G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AciI	CCGC	1 cut(s)	1140
AclWI	GGATC	2 cut(s)	593, 1043
AcoI	YGGCCR	1 cut(s)	735
AcuI	CTGAAG	2 cut(s)	1074, 1305
AfaI	GTAC	5 cut(s)	365, 866, 1151, 1356, 1393
AfiI	CCNNNNNNNGG	5 cut(s)	303, 1015, 1099, 1189, 1318
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	145, 212, 421, 458, 491, 516, 617, 809
AjnI	CCWGG	2 cut(s)	967, 1311
AleI	CACNNNNGTG	2 cut(s)	668, 1184
AluBI	AGCT	6 cut(s)	226, 581, 631, 992, 1031, 1112
AluI	AGCT	6 cut(s)	226, 581, 631, 992, 1031, 1112
Alw21I	GWGCWC	2 cut(s)	8, 531
Alw26I	GTCTC	3 cut(s)	169, 477, 1112
AlwI	GGATC	2 cut(s)	593, 1043
AoxI	GGCC	2 cut(s)	495, 735
ApeKI	GCWGC	4 cut(s)	941, 1031, 1112, 1280
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	4 cut(s)	113, 713, 1171, 1271
AxyI	CCTNAGG	1 cut(s)	936
BauI	CACGAG	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	8, 531
BbvI	GCAGC	4 cut(s)	928, 1018, 1099, 1267
BccI	CCATC	3 cut(s)	943, 1250, 1289
BciT130I	CCWGG	2 cut(s)	969, 1313
BciVI	GTATCC	2 cut(s)	425, 924
BcoDI	GTCTC	3 cut(s)	169, 477, 1112
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	192, 1113
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	2 cut(s)	425, 924
BisI	GCNGC	4 cut(s)	942, 1032, 1113, 1281
BlsI	GCNGC	4 cut(s)	943, 1033, 1114, 1282
Bme1390I	CCNGG	2 cut(s)	969, 1313
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	1408
BmrFI	CCNGG	2 cut(s)	969, 1313
BmsI	GCATC	5 cut(s)	205, 836, 1234, 1324, 1339
BpiI	GAAGAC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	787, 926
BsaJI	CCNNGG	2 cut(s)	738, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	303, 1015, 1099, 1189, 1318
Bse1I	ACTGG	3 cut(s)	120, 262, 918
Bse21I	CCTNAGG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	969, 1313
BseDI	CCNNGG	2 cut(s)	738, 759
BseGI	GGATG	5 cut(s)	827, 1219, 1261, 1339, 1354
BseLI	CCNNNNNNNGG	5 cut(s)	303, 1015, 1099, 1189, 1318
BseMII	CTCAG	4 cut(s)	657, 927, 1001, 1026
BseNI	ACTGG	3 cut(s)	120, 262, 918
BseRI	GAGGAG	4 cut(s)	286, 1160, 1235, 1331
BseXI	GCAGC	4 cut(s)	928, 1018, 1099, 1267
BshFI	GGCC	2 cut(s)	497, 737
BsiHKAI	GWGCWC	2 cut(s)	8, 531
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	5 cut(s)	303, 1015, 1099, 1189, 1318
BsmAI	GTCTC	3 cut(s)	169, 477, 1112
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	497, 737
Bsp1286I	GDGCHC	2 cut(s)	8, 531
Bsp143I	GATC	3 cut(s)	598, 956, 1048
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	1 cut(s)	1140
BspANI	GGCC	2 cut(s)	497, 737
BspCNI	CTCAG	4 cut(s)	658, 928, 1002, 1027
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	1408
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	593, 1043
BsrI	ACTGG	3 cut(s)	120, 262, 918
BssECI	CCNNGG	2 cut(s)	738, 759
BssMI	GATC	3 cut(s)	598, 956, 1048
BssSI	CACGAG	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	759
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	969, 1313
Bst4CI	ACNGT	3 cut(s)	73, 317, 539
Bst6I	CTCTTC	4 cut(s)	172, 891, 1212, 1377
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstDEI	CTNAG	6 cut(s)	175, 446, 666, 936, 1010, 1035
BstDSI	CCRYGG	1 cut(s)	759
BstEII	GGTNACC	1 cut(s)	331
BstENI	CCTNNNNNAGG	3 cut(s)	301, 1013, 1187
BstF5I	GGATG	5 cut(s)	827, 1219, 1261, 1339, 1354
BstKTI	GATC	3 cut(s)	601, 959, 1051
BstMAI	GTCTC	3 cut(s)	169, 477, 1112
BstMBI	GATC	3 cut(s)	598, 956, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	716, 833, 950
BstNI	CCWGG	2 cut(s)	969, 1313
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	967, 1311
BstSFI	CTRYAG	2 cut(s)	192, 1113
BstV1I	GCAGC	4 cut(s)	928, 1018, 1099, 1267
BstV2I	GAAGAC	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	936
BsuI	GTATCC	2 cut(s)	425, 924
BsuRI	GGCC	2 cut(s)	497, 737
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	5 cut(s)	827, 1219, 1261, 1339, 1354
BtsIMutI	CAGTG	3 cut(s)	127, 544, 663
BveI	ACCTGC	1 cut(s)	36
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	5 cut(s)	364, 865, 1150, 1355, 1392
CviAII	CATG	7 cut(s)	233, 733, 760, 880, 1160, 1250, 1292
CviQI	GTAC	5 cut(s)	364, 865, 1150, 1355, 1392
DdeI	CTNAG	6 cut(s)	175, 446, 666, 936, 1010, 1035
DpnI	GATC	3 cut(s)	600, 958, 1050
DpnII	GATC	3 cut(s)	598, 956, 1048
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	4 cut(s)	172, 891, 1212, 1377
EarI	CTCTTC	4 cut(s)	172, 891, 1212, 1377
Eco130I	CCWWGG	1 cut(s)	759
Eco57I	CTGAAG	2 cut(s)	1074, 1305
Eco81I	CCTNAGG	1 cut(s)	936
Eco91I	GGTNACC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	3 cut(s)	301, 1013, 1187
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	967, 1311
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	7 cut(s)	236, 736, 763, 883, 1163, 1253, 1295
FalI	AAGNNNNNCTT	4 cut(s)	888, 920, 1077, 1109
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	232, 732, 759, 879, 1159, 1249, 1291
FauI	CCCGC	1 cut(s)	1147
Fnu4HI	GCNGC	4 cut(s)	942, 1032, 1113, 1281
FokI	GGATG	5 cut(s)	814, 1226, 1268, 1346, 1361
Fsp4HI	GCNGC	4 cut(s)	942, 1032, 1113, 1281
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	4 cut(s)	942, 1032, 1113, 1281
HaeIII	GGCC	2 cut(s)	497, 737
Hin1II	CATG	7 cut(s)	236, 736, 763, 883, 1163, 1253, 1295
HinfI	GANTC	5 cut(s)	466, 680, 1037, 1103, 1340
HphI	GGTGA	4 cut(s)	113, 713, 1171, 1271
Hpy166II	GTNNAC	1 cut(s)	1132
Hpy188I	TCNGA	4 cut(s)	405, 930, 982, 1213
Hpy188III	TCNNGA	9 cut(s)	142, 155, 233, 253, 584, 602, 1052, 1198, 1229
Hpy8I	GTNNAC	1 cut(s)	1132
Hpy99I	CGWCG	1 cut(s)	1348
HpyAV	CCTTC	5 cut(s)	522, 646, 803, 1298, 1397
HpyCH4III	ACNGT	3 cut(s)	73, 317, 539
HpyCH4IV	ACGT	2 cut(s)	159, 247
HpyCH4V	TGCA	5 cut(s)	45, 673, 827, 1115, 1207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	716, 833, 950
HpyF3I	CTNAG	6 cut(s)	175, 446, 666, 936, 1010, 1035
HpySE526I	ACGT	2 cut(s)	159, 247
Hsp92II	CATG	7 cut(s)	236, 736, 763, 883, 1163, 1253, 1295
Kzo9I	GATC	3 cut(s)	598, 956, 1048
LmnI	GCTCC	1 cut(s)	1222
Lsp1109I	GCAGC	4 cut(s)	928, 1018, 1099, 1267
LweI	GCATC	5 cut(s)	205, 836, 1234, 1324, 1339
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	2 cut(s)	159, 247
MaeIII	GTNAC	3 cut(s)	67, 331, 909
MalI	GATC	3 cut(s)	600, 958, 1050
MboI	GATC	3 cut(s)	598, 956, 1048
MhlI	GDGCHC	2 cut(s)	8, 531
MluCI	AATT	8 cut(s)	51, 60, 310, 516, 645, 657, 704, 1066
MlyI	GAGTC	3 cut(s)	460, 689, 1046
MseI	TTAA	5 cut(s)	50, 75, 309, 749, 1020
MslI	CAYNNNNRTG	4 cut(s)	537, 668, 1184, 1254
MspR9I	CCNGG	2 cut(s)	969, 1313
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	969, 1313
MwoI	GCNNNNNNNGC	3 cut(s)	716, 833, 950
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	3 cut(s)	598, 956, 1048
NlaIII	CATG	7 cut(s)	236, 736, 763, 883, 1163, 1253, 1295
NlaIV	GGNNCC	1 cut(s)	1408
NmeAIII	GCCGAG	1 cut(s)	763
OliI	CACNNNNGTG	2 cut(s)	668, 1184
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	1377
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	1103, 1340
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	943, 1033, 1114, 1282
PleI	GAGTC	3 cut(s)	460, 688, 1045
PpsI	GAGTC	3 cut(s)	460, 688, 1045
Psp6I	CCWGG	2 cut(s)	967, 1311
PspEI	GGTNACC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	967, 1311
PspN4I	GGNNCC	1 cut(s)	1408
PspPI	GGNCC	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	609, 641
PstI	CTGCAG	1 cut(s)	1117
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	5 cut(s)	365, 866, 1151, 1356, 1393
RsaNI	GTAC	5 cut(s)	364, 865, 1150, 1355, 1392
RseI	CAYNNNNRTG	4 cut(s)	537, 668, 1184, 1254
SaqAI	TTAA	5 cut(s)	50, 75, 309, 749, 1020
SatI	GCNGC	4 cut(s)	942, 1032, 1113, 1281
Sau3AI	GATC	3 cut(s)	598, 956, 1048
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	3 cut(s)	460, 689, 1046
ScrFI	CCNGG	2 cut(s)	969, 1313
SduI	GDGCHC	2 cut(s)	8, 531
SfaNI	GCATC	5 cut(s)	205, 836, 1234, 1324, 1339
SfcI	CTRYAG	2 cut(s)	192, 1113
SmiMI	CAYNNNNRTG	4 cut(s)	537, 668, 1184, 1254
SmlI	CTYRAG	2 cut(s)	766, 905
SmoI	CTYRAG	2 cut(s)	766, 905
Sse9I	AATT	8 cut(s)	51, 60, 310, 516, 645, 657, 704, 1066
SsiI	CCGC	1 cut(s)	1140
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	967, 1311
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	73, 317, 539
TaiI	ACGT	2 cut(s)	162, 250
TaqI	TCGA	4 cut(s)	889, 955, 1074, 1343
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	8 cut(s)	51, 60, 310, 516, 645, 657, 704, 1066
TatI	WGTACW	3 cut(s)	363, 1149, 1354
TfiI	GAWTC	2 cut(s)	1103, 1340
Tru1I	TTAA	5 cut(s)	50, 75, 309, 749, 1020
Tru9I	TTAA	5 cut(s)	50, 75, 309, 749, 1020
TscAI	CASTG	3 cut(s)	127, 544, 670
TseI	GCWGC	4 cut(s)	941, 1031, 1112, 1280
TspGWI	ACGGA	1 cut(s)	1361
TspRI	CASTG	3 cut(s)	127, 544, 670
Tth111I	GACNNNGTC	1 cut(s)	161
XagI	CCTNNNNNAGG	3 cut(s)	301, 1013, 1187
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.