Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001221

Physical Location & Seq

Genomic Coordinates Forward (+)

30085750 .. 30092239

Gene Structure 6490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGCCACTGAGACTCGAAATCAAGCGTAAGTTTGCTCAAAGATCAGAAAGAGTCAAATCTGTAGATCTCCATCCAACAGAGCCATGGATCCTGGCAAGTTTGTATTCCGGAACTCTGTGCATCTGGAATTACCAGACCCAGACAATGGTAAAATCTTTCGACGTGACTGAATTGCCTGTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAAAGTATTTGAGGCTCATGCTGATTACATTCGCTGTGTTGCTGTTCATCCCACGCTTCCCTATGTCTTATCATCATCTGATGATATGCTCATCAAGCTCTGGGACTGGGAAAAGGGTTGGCTTTGCACTCAAATTTTCGAAGGCCATTCCCATTATGTTATGCAAGTCACTTTCAACCCCAAAGACACCAATACTTTTGCTAGTGCATCCCTTGACCGTACCATAAAAATATGGAATCTTGGCTCTCCGGATCCAAATTTTACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGGTGTGGGATTACCAAACAAAGAGTTGCGTTCAGACTCTCGAAGGTCATACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTACCTATAATTATTACAGGATCCGAGGATGGAACTGTTCGCATATGGCACGCCACCACTTACAGGCTTGAGAATACATTGAACTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAAGGTTCACGCCGGGTTGTAATTGGTTATGACGAAGGATCCATAATGGTGAAACTTGGCCGTGAAATACCAGTGGCTAGTATGGATAACAGCGGAAAAATTATTTGGGCTAAACACAATGAGATACATACTGTAAACATCAAGAGTGTGGGCGCAGATGAGGTCACTGATGGTGAGAGACTTCCTTTGGCCGTTAAAGAGCTAGGGACCTGCGATCTTTATCCTCAAAGCTTGAAGCACAACCCTAATGGTAGGTTTGTGGTAGTTTGTGGAGATGGTGAGTATATTATCTACACTGCCTTGGCGTGGCGAAATAGGTCATTTGGCTCTGCGCTAGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTCGACAAAGATCAAGATCTTCAGCAAGAATTTCCAGGAAAAGAAGACTGTGAGACCCACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAAATCTTTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCTTAAGTTCAATCGTGACATTGTTTCCTCTTATTTTGATGGCGGTAAACAAATTGATGAGGAAGGCATTGAGGACGCATTTGAGCTTCTCAATGAAACCAATGAACGTGTTCGGACTGGCTTATGGGTTGGGGATTGTTTTATCTATACCAACTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAATGTTATTGGATACACTTTACTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGAAGTCTTACCTTCAATTCCTAAGGAGCACCATAATAGCGTGGCACACTTTTTGGAGTCACGTGGCATGACAGAAGATGCTCTAGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTGGCCATACAGCTCGGTAGATTGGCTGTCGCAAAGGACATTGCTGTAGAGGCACAAAATGAATCTAAATGGAAGCAACTTGGAGAATTAGCTATGTCAAGTGGGAAGCTGGATATGGCTGAGGAATGCATGAGGCATGCTATGGATTTGAGTGGTCTGCTGCTGCTTTATTCTTCATTGGGAGATGCAGATGGAATGATGAAGCTGGCAGCACTTGCAAAAGAGCAAGGAAAGAACAATGTCGCTTTTCTTTGCTTGTTCATGTTGGGTCAAGTAGAAGACTGCCTGCATCTGTTGGTGGAAAGTAATCGAATACCTGAAGCCGCTCTGATGGCGAGATCGTACCTTCCAAGCAAGGTCTCCGAAATAGTGGCATTGTGGAGAAACGATTTGACCAAGATAAGTCCAAAGGCTGCTGAATCTCTGGCTGATCCCGAAGAGTATCCCAATCTCTTTGAGGAGTGGCAAGTCGCCCTGTCCCTTGAAAATAGAGCTGCAGAGACGAGGGGCGTCCATCCTCCTGCTGGGGATTATTGTAGTCATGCAGACAGAGATCATACAACTTTAGTGGATGCTTTTAGAATTATGCAAATAGAGGAAGAGGGTCGACTTGAGCAAGGGGATGTTCTCGACGAGGTTGGGGAAGAGGGGGAAGATGGAGAGGAAGAGGAGGAGGAGGATCGTCAGGAAGAGAGTAGTGATGGGAGACAGCAGAATGTGGAAGAAGAGGCTGTTGTGGTGGACGCTGACTCTACGGATGGTGCTGTGCTAGTTAATGGTAACGAGTCTGAAGAACAGTGGGTTCTAACACCGCCACAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

920

Amino Acids

103.97

Weight (kDa)

4.87

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	5 - 171	1.8e-15	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	9 - 155	1.3e-15	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 111	7.6e-09	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	14 - 155	3e-20	WDR5 beta-propeller domain
WD40_Prp19	PF24814	15 - 191	5.9e-20	Prp19 WD40 domain
WDR55	PF24796	16 - 198	3.3e-13	WDR55
Beta-prop_EML_2	PF23414	20 - 172	8e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	31 - 170	2.4e-07	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	33 - 212	4.1e-15	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	36 - 193	9.4e-16	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	58 - 130	1.1e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	59 - 194	3.8e-26	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	60 - 191	7.3e-20	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	69 - 174	3.3e-07	WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	69 - 172	5.5e-08	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	70 - 260	5.4e-14	TEP-1 second beta-propeller
Beta-prop_EIPR1	PF23609	72 - 170	2.2e-06	EIPR1 beta-propeller
WD40	PF00400	91 - 127	1.5e-07	WD domain, G-beta repeat
WD40	PF00400	134 - 171	7.9e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	135 - 295	1.2e-26	WDR3 first beta-propeller domain
WDR55	PF24796	138 - 296	1.7e-14	WDR55
Beta-prop_WDR3_2nd	PF25172	140 - 260	1.1e-14	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	154 - 281	2.2e-29	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	176 - 256	1e-05	WDR36/Utp21 first beta-propeller
WD40	PF00400	177 - 215	2.3e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	185 - 267	1.5e-15	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	186 - 273	1.3e-14	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	196 - 265	9.5e-07	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	198 - 270	8.5e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR75_1st	PF23869	198 - 264	1.8e-06	WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st	PF24817	198 - 288	5e-12	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	200 - 260	3.2e-08	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	202 - 260	9.7e-06	SCAP Beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	202 - 260	2.3e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	206 - 262	1.1e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	220 - 256	4.1e-11	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	319 - 577	1.8e-89	COPA/B second beta-propeller
TPR_COPA_B	PF23953	594 - 774	1.1e-82	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52360 AT1G52360 AT1G52360 AT1G52360 AT1G79990 AT1G79990 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980 AT3G15980
fragaria_vesca	FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_1g05170 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010 FvH4_6g31010
malus_domestica	MD09G1214300.v1.1 MD15G1188300.v1.1 MD17G1196600.v1.1
prunus_persica	Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.3G072300_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1 Prupe.7G228200_v2.0.a1
pyrus_communis	pycom02g04220 pycom09g13110 pycom15g16880 pycom17g20170
rosa_chinensis	RchiOBHm_Chr2g0090881 RchiOBHm_Chr2g0137661
rosa_laevigata	RLG00000016153 RLG00000019667
rosa_multiflora	Rmu_sc0000765.1_g000033 Rmu_sc0000792.1_g000012
rosa_roxburghii	Rroxscaffold_2G00106960 Rroxscaffold_2G00150770
rosa_rugosa	Rorug02G0010700 Rorug02G0010800 Rorug02G0343900
rosa_samantha	Rh2AG057000 Rh2AG391700 Rh2BG399200 Rh2CG378600 Rh2DG056400 Rh2DG414300
rosa_wichuraiana	Rw2G005240 Rw2G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1058
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	2264
AccI	GTMKAC	3 cut(s)	249, 573, 2545
AccIII	TCCGGA	2 cut(s)	107, 523
AciI	CCGC	6 cut(s)	933, 1358, 1412, 1503, 2262, 2750
AcoI	YGGCCR	3 cut(s)	898, 1029, 1941
AcsI	RAATTY	4 cut(s)	408, 532, 1178, 1249
AcuI	CTGAAG	3 cut(s)	1225, 2277, 2748
AcvI	CACGTG	1 cut(s)	1883
AcyI	GRCGYC	1 cut(s)	2448
AfaI	GTAC	4 cut(s)	496, 1685, 1781, 2282
AfiI	CCNNNNNNNGG	5 cut(s)	145, 783, 817, 1146, 2462
AflII	CTTAAG	1 cut(s)	1463
AflIII	ACRYGT	2 cut(s)	234, 1567
AgsI	TTSAA	7 cut(s)	451, 802, 1075, 1471, 1741, 1836, 2423
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	90, 1254
AjuI	GAANNNNNNNTTGG	2 cut(s)	928, 960
Alw21I	GWGCWC	3 cut(s)	1296, 1328, 1851
Alw26I	GTCTC	6 cut(s)	4, 1012, 1267, 2302, 2432, 2638
Aor13HI	TCCGGA	2 cut(s)	107, 523
AoxI	GGCC	5 cut(s)	418, 808, 898, 1029, 1941
ApeKI	GCWGC	5 cut(s)	2098, 2101, 2147, 2351, 2432
ApoI	RAATTY	4 cut(s)	408, 532, 1178, 1249
ArsI	GACNNNNNNTTYG	2 cut(s)	1916, 1948
Asp700I	GAANNNNTTC	1 cut(s)	1569
AspLEI	GCGC	2 cut(s)	995, 1174
AspS9I	GGNCC	2 cut(s)	1047, 1672
AsuC2I	CCSGG	1 cut(s)	854
AsuHPI	GGTGA	5 cut(s)	901, 1025, 1130, 1433, 1658
AsuII	TTCGAA	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	1047, 1672
AxyI	CCTNAGG	1 cut(s)	1842
BalI	TGGCCA	1 cut(s)	1943
BamHI	GGATCC	4 cut(s)	87, 526, 740, 878
BbrPI	CACGTG	1 cut(s)	1883
BbsI	GAAGAC	2 cut(s)	1271, 2223
Bbv12I	GWGCWC	3 cut(s)	1296, 1328, 1851
BbvCI	CCTCAGC	1 cut(s)	2058
BbvI	GCAGC	5 cut(s)	2085, 2088, 2159, 2338, 2419
BceAI	ACGGC	2 cut(s)	885, 1016
BciT130I	CCWGG	2 cut(s)	92, 1256
BciVI	GTATCC	2 cut(s)	1745, 2391
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	854
BcoDI	GTCTC	6 cut(s)	4, 1012, 1267, 2302, 2432, 2638
BfaI	CTAG	7 cut(s)	477, 918, 1043, 1175, 1427, 1904, 2708
BfmI	CTRYAG	5 cut(s)	60, 699, 1927, 1983, 2433
BfrI	CTTAAG	1 cut(s)	1463
BfuAI	ACCTGC	1 cut(s)	1058
BfuI	GTATCC	2 cut(s)	1745, 2391
BglII	AGATCT	2 cut(s)	64, 1236
BisI	GCNGC	6 cut(s)	2099, 2102, 2148, 2262, 2352, 2433
BlsI	GCNGC	6 cut(s)	2100, 2103, 2149, 2263, 2353, 2434
Bme1390I	CCNGG	3 cut(s)	92, 854, 1256
Bme18I	GGWCC	2 cut(s)	1047, 1672
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	1047, 1672
BmiI	GGNNCC	5 cut(s)	89, 528, 742, 880, 1048
BmrFI	CCNGG	3 cut(s)	92, 854, 1256
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	8 cut(s)	129, 491, 535, 1785, 1888, 2113, 2236, 2500
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	1271, 2223
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	633, 2058
Bpu14I	TTCGAA	1 cut(s)	414
BpuEI	CTTGAG	4 cut(s)	809, 833, 1312, 2570
BpuMI	CCSGG	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	1883
BsaBI	GATNNNNATC	4 cut(s)	69, 549, 1059, 1235
BsaHI	GRCGYC	1 cut(s)	2448
BsaI	GGTCTC	2 cut(s)	1267, 2302
BsaJI	CCNNGG	3 cut(s)	83, 744, 1140
BsaWI	WCCGGW	2 cut(s)	107, 523
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 783, 817, 1146, 2462
Bse1I	ACTGG	6 cut(s)	386, 589, 616, 911, 1440, 1582
Bse21I	CCTNAGG	1 cut(s)	1842
Bse3DI	GCAATG	2 cut(s)	195, 1977
Bse8I	GATNNNNATC	4 cut(s)	69, 549, 1059, 1235
BseAI	TCCGGA	2 cut(s)	107, 523
BseBI	CCWGG	2 cut(s)	92, 1256
BseDI	CCNNGG	3 cut(s)	83, 744, 1140
BseJI	GATNNNNATC	4 cut(s)	69, 549, 1059, 1235
BseLI	CCNNNNNNNGG	5 cut(s)	145, 783, 817, 1146, 2462
BseMI	GCAATG	2 cut(s)	195, 1977
BseMII	CTCAG	2 cut(s)	1299, 2049
BseNI	ACTGG	6 cut(s)	386, 589, 616, 911, 1440, 1582
BseRI	GAGGAG	4 cut(s)	2411, 2621, 2624, 2627
BseXI	GCAGC	5 cut(s)	2085, 2088, 2159, 2338, 2419
BseYI	CCCAGC	1 cut(s)	2462
BshFI	GGCC	5 cut(s)	420, 810, 900, 1031, 1943
BsiHKAI	GWGCWC	3 cut(s)	1296, 1328, 1851
BsiSI	CCGG	3 cut(s)	108, 524, 853
BslFI	GGGAC	4 cut(s)	392, 1060, 1321, 2401
BslI	CCNNNNNNNGG	5 cut(s)	145, 783, 817, 1146, 2462
BsmAI	GTCTC	6 cut(s)	4, 1012, 1267, 2302, 2432, 2638
BsmBI	CGTCTC	1 cut(s)	2432
BsmFI	GGGAC	4 cut(s)	392, 1060, 1321, 2401
BsmI	GAATGC	1 cut(s)	2069
BsnI	GGCC	5 cut(s)	420, 810, 900, 1031, 1943
Bso31I	GGTCTC	2 cut(s)	1267, 2302
Bsp119I	TTCGAA	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	1296, 1328, 1851
Bsp13I	TCCGGA	2 cut(s)	107, 523
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	6 cut(s)	933, 1358, 1412, 1503, 2262, 2750
BspANI	GGCC	5 cut(s)	420, 810, 900, 1031, 1943
BspCNI	CTCAG	2 cut(s)	1298, 2050
BspEI	TCCGGA	2 cut(s)	107, 523
BspLI	GGNNCC	5 cut(s)	89, 528, 742, 880, 1048
BspMAI	CTGCAG	2 cut(s)	703, 2437
BspMI	ACCTGC	1 cut(s)	1058
BspT104I	TTCGAA	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	1463
BspTNI	GGTCTC	2 cut(s)	1267, 2302
BsrBI	CCGCTC	1 cut(s)	2264
BsrDI	GCAATG	2 cut(s)	195, 1977
BsrI	ACTGG	6 cut(s)	386, 589, 616, 911, 1440, 1582
BssECI	CCNNGG	3 cut(s)	83, 744, 1140
BssNI	GRCGYC	1 cut(s)	2448
BssT1I	CCWWGG	2 cut(s)	83, 1140
Bst2UI	CCWGG	2 cut(s)	92, 1256
Bst6I	CTCTTC	7 cut(s)	1621, 2370, 2532, 2577, 2598, 2622, 2658
BstACI	GRCGYC	1 cut(s)	2448
BstAFI	CTTAAG	1 cut(s)	1463
BstAPI	GCANNNNNTGC	1 cut(s)	2153
BstBAI	YACGTR	1 cut(s)	1883
BstBI	TTCGAA	1 cut(s)	414
BstC8I	GCNNGC	5 cut(s)	771, 1206, 2076, 2145, 2225
BstDEI	CTNAG	5 cut(s)	8, 633, 1285, 1842, 2058
BstDSI	CCRYGG	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	995, 1174
BstMAI	GTCTC	6 cut(s)	4, 1012, 1267, 2302, 2432, 2638
BstMWI	GCNNNNNNNGC	4 cut(s)	370, 1988, 2153, 2270
BstNI	CCWGG	2 cut(s)	92, 1256
BstNSI	RCATGY	3 cut(s)	238, 1208, 2078
BstSCI	CCNGG	3 cut(s)	90, 852, 1254
BstSFI	CTRYAG	5 cut(s)	60, 699, 1927, 1983, 2433
BstV1I	GCAGC	5 cut(s)	2085, 2088, 2159, 2338, 2419
BstV2I	GAAGAC	2 cut(s)	1271, 2223
BstX2I	RGATCY	6 cut(s)	64, 87, 526, 740, 878, 1236
BstYI	RGATCY	6 cut(s)	64, 87, 526, 740, 878, 1236
Bsu36I	CCTNAGG	1 cut(s)	1842
BsuI	GTATCC	2 cut(s)	1745, 2391
BsuRI	GGCC	5 cut(s)	420, 810, 900, 1031, 1943
BtgI	CCRYGG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	215, 1134
BtsIMutI	CAGTG	9 cut(s)	5, 215, 609, 918, 1005, 1134, 1423, 1447, 2741
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	5 cut(s)	771, 1206, 2076, 2145, 2225
CfoI	GCGC	2 cut(s)	995, 1174
Cfr13I	GGNCC	2 cut(s)	1047, 1672
CseI	GACGC	3 cut(s)	1544, 2437, 2690
Csp6I	GTAC	4 cut(s)	495, 1684, 1780, 2281
CspCI	CAANNNNNGTGG	2 cut(s)	2487, 2522
CviAII	CATG	9 cut(s)	84, 235, 293, 1205, 1888, 2068, 2075, 2200, 2480
CviQI	GTAC	4 cut(s)	495, 1684, 1780, 2281
DdeI	CTNAG	5 cut(s)	8, 633, 1285, 1842, 2058
EaeI	YGGCCR	3 cut(s)	898, 1029, 1941
Eam1104I	CTCTTC	7 cut(s)	1621, 2370, 2532, 2577, 2598, 2622, 2658
EarI	CTCTTC	7 cut(s)	1621, 2370, 2532, 2577, 2598, 2622, 2658
EciI	GGCGGA	2 cut(s)	1373, 1427
Eco130I	CCWWGG	2 cut(s)	83, 1140
Eco31I	GGTCTC	2 cut(s)	1267, 2302
Eco47I	GGWCC	2 cut(s)	1047, 1672
Eco57I	CTGAAG	3 cut(s)	1225, 2277, 2748
Eco72I	CACGTG	1 cut(s)	1883
Eco81I	CCTNAGG	1 cut(s)	1842
EcoO109I	RGGNCCY	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	90, 1254
EcoT14I	CCWWGG	2 cut(s)	83, 1140
EcoT22I	ATGCAT	1 cut(s)	2069
ErhI	CCWWGG	2 cut(s)	83, 1140
Esp3I	CGTCTC	1 cut(s)	2432
FaeI	CATG	9 cut(s)	87, 238, 296, 1208, 1891, 2071, 2078, 2203, 2483
FaqI	GGGAC	4 cut(s)	392, 1060, 1321, 2401
FatI	CATG	9 cut(s)	83, 234, 292, 1204, 1887, 2067, 2074, 2199, 2479
FauNDI	CATATG	1 cut(s)	764
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	3 cut(s)	249, 573, 2545
Fnu4HI	GCNGC	6 cut(s)	2099, 2102, 2148, 2262, 2352, 2433
Fsp4HI	GCNGC	6 cut(s)	2099, 2102, 2148, 2262, 2352, 2433
FspBI	CTAG	7 cut(s)	477, 918, 1043, 1175, 1427, 1904, 2708
GlaI	GCGC	2 cut(s)	994, 1173
GluI	GCNGC	6 cut(s)	2099, 2102, 2148, 2262, 2352, 2433
GsaI	CCCAGC	1 cut(s)	2466
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	5 cut(s)	420, 810, 900, 1031, 1943
HapII	CCGG	3 cut(s)	108, 524, 853
HgaI	GACGC	3 cut(s)	1544, 2437, 2690
HhaI	GCGC	2 cut(s)	995, 1174
Hin1I	GRCGYC	1 cut(s)	2448
Hin1II	CATG	9 cut(s)	87, 238, 296, 1208, 1891, 2071, 2078, 2203, 2483
Hin6I	GCGC	2 cut(s)	993, 1172
HinP1I	GCGC	2 cut(s)	993, 1172
HincII	GTYRAC	1 cut(s)	2546
HindII	GTYRAC	1 cut(s)	2546
HindIII	AAGCTT	1 cut(s)	1069
HpaII	CCGG	3 cut(s)	108, 524, 853
HphI	GGTGA	5 cut(s)	901, 1025, 1130, 1433, 1658
Hpy166II	GTNNAC	8 cut(s)	250, 565, 574, 848, 976, 1508, 2546, 2680
Hpy8I	GTNNAC	8 cut(s)	250, 565, 574, 848, 976, 1508, 2546, 2680
Hpy99I	CGWCG	2 cut(s)	164, 2573
HpyAV	CCTTC	7 cut(s)	410, 671, 869, 1291, 1517, 1842, 2294
HpyCH4IV	ACGT	4 cut(s)	162, 1310, 1567, 1882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	370, 1988, 2153, 2270
HpyF3I	CTNAG	5 cut(s)	8, 633, 1285, 1842, 2058
HpySE526I	ACGT	4 cut(s)	162, 1310, 1567, 1882
Hsp92I	GRCGYC	1 cut(s)	2448
Hsp92II	CATG	9 cut(s)	87, 238, 296, 1208, 1891, 2071, 2078, 2203, 2483
HspAI	GCGC	2 cut(s)	993, 1172
Kpn2I	TCCGGA	2 cut(s)	107, 523
Ksp22I	TGATCA	1 cut(s)	622
LmnI	GCTCC	3 cut(s)	224, 1201, 1846
Lsp1109I	GCAGC	5 cut(s)	2085, 2088, 2159, 2338, 2419
LweI	GCATC	8 cut(s)	129, 491, 535, 1785, 1888, 2113, 2236, 2500
MaeI	CTAG	7 cut(s)	477, 918, 1043, 1175, 1427, 1904, 2708
MaeII	ACGT	4 cut(s)	162, 1310, 1567, 1882
MaeIII	GTNAC	8 cut(s)	163, 442, 1003, 1387, 1475, 1651, 1878, 2717
MbiI	CCGCTC	1 cut(s)	2264
MfeI	CAATTG	1 cut(s)	1434
MflI	RGATCY	6 cut(s)	64, 87, 526, 740, 878, 1236
MhlI	GDGCHC	3 cut(s)	1296, 1328, 1851
MlsI	TGGCCA	1 cut(s)	1943
MluNI	TGGCCA	1 cut(s)	1943
MlyI	GAGTC	7 cut(s)	6, 60, 664, 1780, 1886, 2681, 2732
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	1943
Mph1103I	ATGCAT	1 cut(s)	2069
MroI	TCCGGA	2 cut(s)	107, 523
MroXI	GAANNNNTTC	1 cut(s)	1569
MscI	TGGCCA	1 cut(s)	1943
MseI	TTAA	6 cut(s)	840, 1035, 1464, 1629, 1766, 2712
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	1943
MspA1I	CMGCKG	1 cut(s)	933
MspCI	CTTAAG	1 cut(s)	1463
MspI	CCGG	3 cut(s)	108, 524, 853
MspR9I	CCNGG	3 cut(s)	92, 854, 1256
MunI	CAATTG	1 cut(s)	1434
Mva1269I	GAATGC	1 cut(s)	2069
MvaI	CCWGG	2 cut(s)	92, 1256
MwoI	GCNNNNNNNGC	4 cut(s)	370, 1988, 2153, 2270
NciI	CCSGG	1 cut(s)	854
NcoI	CCATGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	764
NlaIII	CATG	9 cut(s)	87, 238, 296, 1208, 1891, 2071, 2078, 2203, 2483
NlaIV	GGNNCC	5 cut(s)	89, 528, 742, 880, 1048
NmuCI	GTSAC	5 cut(s)	163, 442, 1003, 1475, 1878
NsiI	ATGCAT	1 cut(s)	2069
NspI	RCATGY	3 cut(s)	238, 1208, 2078
NspV	TTCGAA	1 cut(s)	414
PaeI	GCATGC	2 cut(s)	1208, 2078
PciI	ACATGT	1 cut(s)	234
PctI	GAATGC	1 cut(s)	2069
PdmI	GAANNNNTTC	1 cut(s)	1569
PfeI	GAWTC	3 cut(s)	511, 2000, 2357
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	1254
PkrI	GCNGC	6 cut(s)	2100, 2103, 2149, 2263, 2353, 2434
PleI	GAGTC	7 cut(s)	6, 59, 664, 1780, 1885, 2681, 2731
PmaCI	CACGTG	1 cut(s)	1883
PmlI	CACGTG	1 cut(s)	1883
PpsI	GAGTC	7 cut(s)	6, 59, 664, 1780, 1885, 2681, 2731
Ppu21I	YACGTR	1 cut(s)	1883
PpuMI	RGGWCCY	1 cut(s)	1047
PscI	ACATGT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	1047
Psp6I	CCWGG	2 cut(s)	90, 1254
PspCI	CACGTG	1 cut(s)	1883
PspFI	CCCAGC	1 cut(s)	2462
PspGI	CCWGG	2 cut(s)	90, 1254
PspN4I	GGNNCC	5 cut(s)	89, 528, 742, 880, 1048
PspPI	GGNCC	2 cut(s)	1047, 1672
PspPPI	RGGWCCY	1 cut(s)	1047
PstI	CTGCAG	2 cut(s)	703, 2437
PsuI	RGATCY	6 cut(s)	64, 87, 526, 740, 878, 1236
RsaI	GTAC	4 cut(s)	496, 1685, 1781, 2282
RsaNI	GTAC	4 cut(s)	495, 1684, 1780, 2281
RseI	CAYNNNNRTG	1 cut(s)	887
SalI	GTCGAC	1 cut(s)	2544
SaqAI	TTAA	6 cut(s)	840, 1035, 1464, 1629, 1766, 2712
SatI	GCNGC	6 cut(s)	2099, 2102, 2148, 2262, 2352, 2433
Sau96I	GGNCC	2 cut(s)	1047, 1672
SchI	GAGTC	7 cut(s)	6, 60, 664, 1780, 1886, 2681, 2732
ScrFI	CCNGG	3 cut(s)	92, 854, 1256
SduI	GDGCHC	3 cut(s)	1296, 1328, 1851
SfaNI	GCATC	8 cut(s)	129, 491, 535, 1785, 1888, 2113, 2236, 2500
SfcI	CTRYAG	5 cut(s)	60, 699, 1927, 1983, 2433
SfuI	TTCGAA	1 cut(s)	414
SinI	GGWCC	2 cut(s)	1047, 1672
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	5 cut(s)	788, 812, 1327, 1463, 2549
SmoI	CTYRAG	5 cut(s)	788, 812, 1327, 1463, 2549
SphI	GCATGC	2 cut(s)	1208, 2078
SsiI	CCGC	6 cut(s)	933, 1358, 1412, 1503, 2262, 2750
SspMI	CTAG	7 cut(s)	477, 918, 1043, 1175, 1427, 1904, 2708
StyD4I	CCNGG	3 cut(s)	90, 852, 1254
StyI	CCWWGG	2 cut(s)	83, 1140
TaiI	ACGT	4 cut(s)	165, 1313, 1570, 1885
TaqI	TCGA	8 cut(s)	15, 159, 414, 675, 1223, 2248, 2545, 2568
TaqII	GACCGA	1 cut(s)	171
TatI	WGTACW	2 cut(s)	1683, 1779
TauI	GCSGC	1 cut(s)	2264
TfiI	GAWTC	3 cut(s)	511, 2000, 2357
Tru1I	TTAA	6 cut(s)	840, 1035, 1464, 1629, 1766, 2712
Tru9I	TTAA	6 cut(s)	840, 1035, 1464, 1629, 1766, 2712
TscAI	CASTG	9 cut(s)	12, 215, 616, 918, 1012, 1141, 1423, 1447, 2741
TseFI	GTSAC	5 cut(s)	163, 442, 1003, 1475, 1878
TseI	GCWGC	5 cut(s)	2098, 2101, 2147, 2351, 2432
Tsp45I	GTSAC	5 cut(s)	163, 442, 1003, 1475, 1878
TspGWI	ACGGA	2 cut(s)	217, 2708
TspRI	CASTG	9 cut(s)	12, 215, 616, 918, 1012, 1141, 1423, 1447, 2741
Van91I	CCANNNNNTGG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	1463
VpaK11BI	GGWCC	2 cut(s)	1047, 1672
XapI	RAATTY	4 cut(s)	408, 532, 1178, 1249
XbaI	TCTAGA	1 cut(s)	1903
XceI	RCATGY	3 cut(s)	238, 1208, 2078
XcmI	CCANNNNNNNNNTGG	2 cut(s)	81, 2459
XmiI	GTMKAC	3 cut(s)	249, 573, 2545
XmnI	GAANNNNTTC	1 cut(s)	1569
XspI	CTAG	7 cut(s)	477, 918, 1043, 1175, 1427, 1904, 2708
Zsp2I	ATGCAT	1 cut(s)	2069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.