Rorug02G0343900

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
42916295 .. 42917937
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0343900.1

Sequence Viewer

Length: 1287 bp
ATGATCTATTGTTGGTTTAGCTTAGCTGCTCCCATATTGTTTTTGTTCACAGCGAATGCATTATCAGCCAACTCCAGCCTCAGAATTCCCTTCCCATTTGACATAAAAAGTGCAAAAGAATTTTATCTAAGCGACGGGGTTGACTTTAGGCAAAGCAATAACAATGCTACTAATATTAACGTCTGTTTTGAGAAAGCTTTGGGTTTAGCCGGTTTAGGGTATTGGTGCAGCATCCAAGGGGATGCTTATGGCAATGAATATGGCTATGGCTTTGGGTTATATGCATATGCTTATAACTATGAAACAAAGACACTTCATCCCACTGATGTATGCCAAGCTATCGAGGAACAGGAGTGGAAGGAAGTACCCGAGTACTGTTACTATGGTGTTTGTCCACTTCCTTGGACCTTCAATGCTTGCTCATATCGGTATGGAATTATACGATCTATACCAAAACGATCAGGAAATCATGGTTGGGTGTTTTTTTTTGGCTCCCCCTATGTATTTGCAAGTCCGATCCCTTTCATTTTAGGTTGTTACTCCTCTCTTTCTCTGCTTTTGTACGTGCTCTTGGGTATTTATTCTAGTGTGAAGAAAAACATCTTCATTCATCTTAAATTCAAGTTGTTCAAAAAAAATGGAGGGTTATTGTTAGAGCAACATATTGCTAATTCTCATGGACCTGGAGCAGGATGCTCAAAAATTTTCACAGCCGAGGAGCTTGTGATGGAGATCATTTTTGCAAAAGAAAAGGTACTAGTGGAGGAGGGCCAAATCAAGTGTTTTATAAATGAGATTATCACTCTTGCCCATATCAACCATCAAAATGTGATCAAGTTCTTGGGCTGCTGCTTAGAGACTGAAGCTCCCATTTTGGTTTATGAATTCACCTTTAACGGGACCCTTTTCGATTACATTCATGATTGGAAAAATGGGAAAGTTGCAATGCCACATGGGGATATCCTTATGAAGATAGCATCAGAATCTGCACCAGGTCTTGCTTATTTGCATTCTTCATCAATCATTCATGGAAATGTCAAATCTTCCAACATTTTACTAACTGATTGCTTGGCCAAAGTTGCTGGTTTTGGACCTCCAAGTTTAGTCCCTAGCAATGAGTCCCAGATAAGTACATTGGTGCAGAGGACACTCGGTTATCTGGACCCAGAGTATTTCGTTACAGGCCAATTGACAGATAAGAGTGATGTCTACAGCTTTGGAGTCGTTTTGGTAGAAATTTTTACTGGAGAGAAGCCCATATCCTTTAATAGACCAGAAAATCAATGA

Protein Analysis

428

Amino Acids

47.84

Weight (kDa)

5.9

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 255 - 421 1.2e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 256 - 421 6.9e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 294, 788
AccI GTMKAC 1 cut(s) 1209
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 6 cut(s) 84, 119, 617, 702, 884, 1236
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 5 cut(s) 366, 374, 563, 756, 1132
AfiI CCNNNNNNNGG 3 cut(s) 216, 689, 897
AgsI TTSAA 3 cut(s) 412, 622, 631
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 2 cut(s) 682, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 7 cut(s) 21, 26, 197, 338, 721, 866, 1215
AluI AGCT 7 cut(s) 21, 26, 197, 338, 721, 866, 1215
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 851
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 3 cut(s) 769, 1071, 1183
ApeKI GCWGC 4 cut(s) 26, 228, 846, 849
ApoI RAATTY 6 cut(s) 84, 119, 617, 702, 884, 1236
AspS9I GGNCC 6 cut(s) 405, 680, 769, 900, 1091, 1162
AsuHPI GGTGA 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 5 cut(s) 405, 680, 900, 1091, 1162
BalI TGGCCA 1 cut(s) 1073
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 4 cut(s) 13, 240, 833, 836
BccI CCATC 2 cut(s) 721, 828
BciT130I CCWGG 2 cut(s) 684, 993
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 851
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 3 cut(s) 585, 758, 1110
BfmI CTRYAG 1 cut(s) 1210
BisI GCNGC 4 cut(s) 27, 229, 847, 850
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 4 cut(s) 28, 230, 848, 851
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 684, 993
Bme18I GGWCC 5 cut(s) 405, 680, 900, 1091, 1162
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 6 cut(s) 405, 680, 769, 900, 1091, 1162
BmiI GGNNCC 4 cut(s) 493, 901, 902, 1164
BmrFI CCNGG 2 cut(s) 684, 993
BmsI GCATC 4 cut(s) 232, 240, 683, 986
BpmI CTGGAG 3 cut(s) 58, 705, 1266
Bpu1102I GCTNAGC 1 cut(s) 22
BsaAI YACGTR 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 731
BsaJI CCNNGG 3 cut(s) 235, 401, 714
BsaXI ACNNNNNCTCC 2 cut(s) 850, 880
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 689, 897
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 1249
Bse3DI GCAATG 3 cut(s) 259, 951, 1120
Bse8I GATNNNNATC 1 cut(s) 731
BseBI CCWGG 2 cut(s) 684, 993
BseDI CCNNGG 3 cut(s) 235, 401, 714
BseGI GGATG 4 cut(s) 231, 247, 316, 698
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 3 cut(s) 216, 689, 897
BseMI GCAATG 3 cut(s) 259, 951, 1120
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 1249
BseRI GAGGAG 3 cut(s) 532, 731, 779
BseXI GCAGC 4 cut(s) 13, 240, 833, 836
BsgI GTGCAG 3 cut(s) 247, 972, 1160
BshFI GGCC 3 cut(s) 771, 1073, 1185
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 3 cut(s) 913, 1091, 1105
BslI CCNNNNNNNGG 3 cut(s) 216, 689, 897
BsmAI GTCTC 1 cut(s) 851
BsmFI GGGAC 3 cut(s) 913, 1091, 1105
BsmI GAATGC 2 cut(s) 61, 1009
BsnI GGCC 3 cut(s) 771, 1073, 1185
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 6 cut(s) 3, 443, 458, 516, 732, 831
Bsp1720I GCTNAGC 1 cut(s) 22
BspANI GGCC 3 cut(s) 771, 1073, 1185
BspCNI CTCAG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 493, 901, 902, 1164
BspPI GGATC 1 cut(s) 511
BsrDI GCAATG 3 cut(s) 259, 951, 1120
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 1249
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 235, 401, 714
BssMI GATC 6 cut(s) 3, 443, 458, 516, 732, 831
BssT1I CCWWGG 2 cut(s) 235, 401
Bst2UI CCWGG 2 cut(s) 684, 993
Bst4CI ACNGT 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 22, 80, 128, 853
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 231, 247, 316, 698
BstKTI GATC 6 cut(s) 6, 446, 461, 519, 735, 834
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 6 cut(s) 3, 443, 458, 516, 732, 831
BstMWI GCNNNNNNNGC 2 cut(s) 65, 1079
BstNI CCWGG 2 cut(s) 684, 993
BstSCI CCNGG 2 cut(s) 682, 991
BstSFI CTRYAG 1 cut(s) 1210
BstV1I GCAGC 4 cut(s) 13, 240, 833, 836
BstXI CCANNNNNNTGG 1 cut(s) 402
BsuRI GGCC 3 cut(s) 771, 1073, 1185
BtsCI GGATG 4 cut(s) 231, 247, 316, 698
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 1 cut(s) 919
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 6 cut(s) 405, 680, 769, 900, 1091, 1162
CsiI ACCWGGT 1 cut(s) 991
Csp6I GTAC 5 cut(s) 365, 373, 562, 755, 1131
CviAII CATG 5 cut(s) 470, 677, 920, 953, 1028
CviQI GTAC 5 cut(s) 365, 373, 562, 755, 1131
DdeI CTNAG 4 cut(s) 22, 80, 128, 853
DpnI GATC 6 cut(s) 5, 445, 460, 518, 734, 833
DpnII GATC 6 cut(s) 3, 443, 458, 516, 732, 831
EaeI YGGCCR 1 cut(s) 1071
Eco130I CCWWGG 2 cut(s) 235, 401
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 5 cut(s) 405, 680, 900, 1091, 1162
Eco57I CTGAAG 1 cut(s) 882
Eco88I CYCGRG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 900
EcoRI GAATTC 2 cut(s) 84, 884
EcoRII CCWGG 2 cut(s) 682, 991
EcoRV GATATC 1 cut(s) 961
EcoT14I CCWWGG 2 cut(s) 235, 401
EcoT22I ATGCAT 2 cut(s) 61, 286
ErhI CCWWGG 2 cut(s) 235, 401
FaeI CATG 5 cut(s) 473, 680, 923, 956, 1031
FaqI GGGAC 3 cut(s) 913, 1091, 1105
FatI CATG 5 cut(s) 469, 676, 919, 952, 1027
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 831
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 4 cut(s) 27, 229, 847, 850
FokI GGATG 4 cut(s) 218, 254, 303, 705
Fsp4HI GCNGC 4 cut(s) 27, 229, 847, 850
FspBI CTAG 3 cut(s) 585, 758, 1110
GluI GCNGC 4 cut(s) 27, 229, 847, 850
GsuI CTGGAG 3 cut(s) 58, 705, 1266
HaeIII GGCC 3 cut(s) 771, 1073, 1185
HapII CCGG 1 cut(s) 210
Hin1II CATG 5 cut(s) 473, 680, 923, 956, 1031
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 3 cut(s) 983, 1118, 1221
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 880
Hpy166II GTNNAC 4 cut(s) 48, 142, 395, 1210
Hpy188I TCNGA 3 cut(s) 83, 516, 982
Hpy188III TCNNGA 3 cut(s) 462, 920, 1160
Hpy8I GTNNAC 4 cut(s) 48, 142, 395, 1210
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 100, 352, 418
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 180, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 1079
HpyF3I CTNAG 4 cut(s) 22, 80, 128, 853
HpySE526I ACGT 2 cut(s) 180, 564
Hsp92II CATG 5 cut(s) 473, 680, 923, 956, 1031
KflI GGGWCCC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 6 cut(s) 3, 443, 458, 516, 732, 831
LmnI GCTCC 5 cut(s) 34, 497, 686, 718, 871
Lsp1109I GCAGC 4 cut(s) 13, 240, 833, 836
LweI GCATC 4 cut(s) 232, 240, 683, 986
MabI ACCWGGT 1 cut(s) 991
MaeI CTAG 3 cut(s) 585, 758, 1110
MaeII ACGT 2 cut(s) 180, 564
MaeIII GTNAC 3 cut(s) 377, 536, 1177
MalI GATC 6 cut(s) 5, 445, 460, 518, 734, 833
MboI GATC 6 cut(s) 3, 443, 458, 516, 732, 831
MboII GAAGA 5 cut(s) 595, 604, 982, 1005, 1035
MfeI CAATTG 1 cut(s) 1187
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 9 cut(s) 84, 119, 435, 617, 670, 702, 884, 1187, 1236
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 2 cut(s) 1127, 1230
MmeI TCCRAC 1 cut(s) 1071
MnlI CCTC 9 cut(s) 89, 337, 553, 635, 709, 757, 760, 1104, 1137
Mox20I TGGCCA 1 cut(s) 1073
Mph1103I ATGCAT 2 cut(s) 61, 286
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 4 cut(s) 177, 615, 894, 1266
MslI CAYNNNNRTG 2 cut(s) 825, 1032
Msp20I TGGCCA 1 cut(s) 1073
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 684, 993
MunI CAATTG 1 cut(s) 1187
Mva1269I GAATGC 2 cut(s) 61, 1009
MvaI CCWGG 2 cut(s) 684, 993
MwoI GCNNNNNNNGC 2 cut(s) 65, 1079
NdeI CATATG 1 cut(s) 286
NdeII GATC 6 cut(s) 3, 443, 458, 516, 732, 831
NlaIII CATG 5 cut(s) 473, 680, 923, 956, 1031
NlaIV GGNNCC 4 cut(s) 493, 901, 902, 1164
NmeAIII GCCGAG 1 cut(s) 739
NsiI ATGCAT 2 cut(s) 61, 286
PagI TCATGA 1 cut(s) 919
PctI GAATGC 2 cut(s) 61, 1009
PfeI GAWTC 1 cut(s) 983
PkrI GCNGC 4 cut(s) 28, 230, 848, 851
PleI GAGTC 2 cut(s) 1126, 1229
PpsI GAGTC 2 cut(s) 1126, 1229
Ppu21I YACGTR 1 cut(s) 565
PpuMI RGGWCCY 1 cut(s) 900
PsiI TTATAA 2 cut(s) 294, 788
Psp5II RGGWCCY 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 682, 991
PspGI CCWGG 2 cut(s) 682, 991
PspN4I GGNNCC 4 cut(s) 493, 901, 902, 1164
PspPI GGNCC 6 cut(s) 405, 680, 769, 900, 1091, 1162
PspPPI RGGWCCY 1 cut(s) 900
PstNI CAGNNNCTG 1 cut(s) 986
RsaI GTAC 5 cut(s) 366, 374, 563, 756, 1132
RsaNI GTAC 5 cut(s) 365, 373, 562, 755, 1131
RseI CAYNNNNRTG 2 cut(s) 825, 1032
SaqAI TTAA 4 cut(s) 177, 615, 894, 1266
SatI GCNGC 4 cut(s) 27, 229, 847, 850
Sau3AI GATC 6 cut(s) 3, 443, 458, 516, 732, 831
Sau96I GGNCC 6 cut(s) 405, 680, 769, 900, 1091, 1162
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 2 cut(s) 1127, 1230
ScrFI CCNGG 2 cut(s) 684, 993
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 991
SfaNI GCATC 4 cut(s) 232, 240, 683, 986
SfcI CTRYAG 1 cut(s) 1210
SinI GGWCC 5 cut(s) 405, 680, 900, 1091, 1162
SmiMI CAYNNNNRTG 2 cut(s) 825, 1032
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 9 cut(s) 84, 119, 435, 617, 670, 702, 884, 1187, 1236
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 585, 758, 1110
StyD4I CCNGG 2 cut(s) 682, 991
StyI CCWWGG 2 cut(s) 235, 401
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 2 cut(s) 183, 567
TaqI TCGA 2 cut(s) 342, 909
TasI AATT 9 cut(s) 84, 119, 435, 617, 670, 702, 884, 1187, 1236
TatI WGTACW 2 cut(s) 372, 1130
TfiI GAWTC 1 cut(s) 983
Tru1I TTAA 4 cut(s) 177, 615, 894, 1266
Tru9I TTAA 4 cut(s) 177, 615, 894, 1266
TscAI CASTG 1 cut(s) 328
TseI GCWGC 4 cut(s) 26, 228, 846, 849
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 5 cut(s) 405, 680, 900, 1091, 1162
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 6 cut(s) 84, 119, 617, 702, 884, 1236
XmiI GTMKAC 1 cut(s) 1209
XspI CTAG 3 cut(s) 585, 758, 1110
ZrmI AGTACT 1 cut(s) 374
Zsp2I ATGCAT 2 cut(s) 61, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.