Rh7BG292900

Short-chain dehydrogenase reductase family 42E member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0021084
Physical Location & Seq
Forward (+)
27507263 .. 27507499
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG292900.1

Sequence Viewer

Length: 237 bp
ATGCACTTATTGAATGAAGACGAAGGCATCGACGGCAACATTTCCGTGGTGACCGGCGGGTTGGGCTTCGTCCGCTTGGCACTCTGCTCGGACCTTCTCCGGAGAGGATCTAGTCAAGTTCGAGCCTTTGACCTCCGAACCACTTCTCCTTGGTTTGACTATCTCCGCAAACTAGGCGTCCACTACATTAATGCCTCTAACAGTTTAACGTTCGATCTTCTATTCACTTACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD DUF4499

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

6.01

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3Beta_HSD PF01073 16 - 63 3.8e-07 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021084)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g26170
rosa_multiflora Rmu_ssc0000117.1_g000010
rosa_rugosa Rorug07G0161500
rosa_samantha Rh7BG292900 Rh7DG302000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 3 cut(s) 57, 73, 166
AclI AACGTT 1 cut(s) 209
AclWI GGATC 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 13
AloI GAACNNNNNNTCC 2 cut(s) 130, 162
AlwI GGATC 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 99
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BfaI CTAG 2 cut(s) 111, 173
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 45, 149
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse118I RCCGGY 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 45, 149
BsiSI CCGG 2 cut(s) 54, 100
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 107, 214
BspACI CCGC 3 cut(s) 57, 73, 166
BspEI TCCGGA 1 cut(s) 99
BspHI TCATGA 1 cut(s) 233
BspPI GGATC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 45, 149
BssMI GATC 2 cut(s) 107, 214
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 49
BstKTI GATC 2 cut(s) 110, 217
BstMBI GATC 2 cut(s) 107, 214
BstMWI GCNNNNNNNGC 4 cut(s) 33, 63, 72, 174
BstPI GGTNACC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 45
CciI TCATGA 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 234
CviJI RGCY 2 cut(s) 66, 125
CviKI_1 RGCY 2 cut(s) 66, 125
DpnI GATC 2 cut(s) 109, 216
DpnII GATC 2 cut(s) 107, 214
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 91
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 237
FaiI YATR 1 cut(s) 235
FatI CATG 1 cut(s) 233
FauI CCCGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 111, 173
HapII CCGG 2 cut(s) 54, 100
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 237
HpaII CCGG 2 cut(s) 54, 100
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 91, 137
Hpy188III TCNNGA 2 cut(s) 100, 234
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 17, 104
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 63, 72, 174
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 107, 214
LpnPI CCDG 2 cut(s) 67, 113
LweI GCATC 1 cut(s) 36
MaeI CTAG 2 cut(s) 111, 173
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 109, 216
MboI GATC 2 cut(s) 107, 214
MboII GAAGA 2 cut(s) 29, 209
MflI RGATCY 1 cut(s) 107
MnlI CCTC 3 cut(s) 98, 143, 205
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 2 cut(s) 189, 206
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 2 cut(s) 54, 100
MwoI GCNNNNNNNGC 4 cut(s) 33, 63, 72, 174
NdeII GATC 2 cut(s) 107, 214
NlaIII CATG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 49
PagI TCATGA 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 142
PshBI ATTAAT 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 2 cut(s) 189, 206
Sau3AI GATC 2 cut(s) 107, 214
Sau96I GGNCC 1 cut(s) 91
SetI ASST 3 cut(s) 96, 135, 212
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 44
SsiI CCGC 3 cut(s) 57, 73, 166
SspMI CTAG 2 cut(s) 111, 173
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 30, 121, 213
Tru1I TTAA 2 cut(s) 189, 206
Tru9I TTAA 2 cut(s) 189, 206
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 91
VspI ATTAAT 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 2 cut(s) 111, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.