Rorug07G0161500

Short-chain dehydrogenase reductase family 42E member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012481
Physical Location & Seq
Reverse (-)
12941287 .. 12944046
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0161500.1

Sequence Viewer

Length: 822 bp
ATGGAGACAATGCGTGTTCTTGTGTTGCGTGGTTCTCATGTGGTCATGGCAGTGAGGAACAAGGATGCTGGGACAAATGTCAAAGAAGCACTTCTCAAAGAAATTCCGGATGCTAAAATTGATGTTATGGAGTTAGACCTCAGTTCATTGGCATCTGTAAGAAAGTTTGCAGAAGATTACATTGCCTTGGGTCTCCCATTGAATATTCTTATTAACAATGCAGGGGTTATGGCAAGCCCATTCAAGCTTTCTCAAGACAACATTGAACTCCAGTTTGCAACTAACCATTTAGGTCATTTTCTTCTGACAGATCTTCTGTTGGATACCATGAAAAGCACCTCAAGAGAAAGCAACATTGAGGGGAGAATTGTTAACTTATCATCACTCGGCCATCAATACAGCTACCGTGAAGGAATTCGTTTTGATGCAATTAATGATGAATCAAAATACAGCAAATACTATGCTTATGGACAATCCAAGCTTGCAAACATACTGCATGCTAAAGAGCTTAACAGGCGTCTCAAGGAAGAAGGAGTCGAGATAACTGCTAATGCTGTTCACCCTGGAGCAATTCTCACCAATCTTATGCGCTATGATAACTTTTTACATTCTGTTATGAAGGTGCTGCGTCCATTTATCACTAAATCTATTCCCCAGGGAGCAGCGACCACATGCTTTGTGGCACTGAATCCACAAGTCAAGGGAGTAAGTGGCGAATACTTTGTGGACTGTAATGTTGCCAAGCCGAGCTCTCAGGCAAAAGATGCAGATTTAGCTACCAAACTCTGGGATTTCAGCTTGACCTTGACCAATGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD DUF4499

Protein Analysis

273

Amino Acids

30.34

Weight (kDa)

7.76

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 2 - 197 2.1e-20 short chain dehydrogenase
adh_short_C2 PF13561 7 - 239 9.3e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33630
fragaria_vesca FvH4_5g26130 FvH4_5g26130
malus_domestica MD06G1004300.v1.1
prunus_persica Prupe.5G005700_v2.0.a1 Prupe.5G005700_v2.0.a1 Prupe.5G005700_v2.0.a1
pyrus_communis pycom06g00410
rosa_chinensis RchiOBHm_Chr7g0216661
rosa_laevigata RLG00000002552
rosa_multiflora Rmu_sc0029435.1_g000001 Rmu_ssc0000117.1_g000009
rosa_roxburghii Rroxscaffold_3G00243030
rosa_rugosa Rorug07G0161500
rosa_samantha Rh7AG301300 Rh7BG292800 Rh7CG319900 Rh7DG301900
rosa_wichuraiana Rw7G025570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 786
AccIII TCCGGA 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 2 cut(s) 102, 414
AcyI GRCGYC 1 cut(s) 517
AfiI CCNNNNNNNGG 1 cut(s) 786
AgsI TTSAA 3 cut(s) 202, 244, 266
AjnI CCWGG 2 cut(s) 562, 654
AluBI AGCT 7 cut(s) 247, 402, 481, 508, 750, 776, 798
AluI AGCT 7 cut(s) 247, 402, 481, 508, 750, 776, 798
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 2 cut(s) 197, 524
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 625, 662
ApoI RAATTY 2 cut(s) 102, 414
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 2 cut(s) 90, 414
AspLEI GCGC 1 cut(s) 591
AsuHPI GGTGA 2 cut(s) 551, 568
BanII GRGCYC 1 cut(s) 752
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 2 cut(s) 612, 674
BccI CCATC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 2 cut(s) 564, 656
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 197, 524
BfuI GTATCC 1 cut(s) 316
BglII AGATCT 1 cut(s) 310
BisI GCNGC 2 cut(s) 626, 663
BlsI GCNGC 2 cut(s) 627, 664
Bme1390I CCNGG 2 cut(s) 564, 656
BmrFI CCNGG 2 cut(s) 564, 656
BmsI GCATC 5 cut(s) 55, 100, 161, 415, 754
BoxI GACNNNNGTC 2 cut(s) 77, 812
BplI GAGNNNNNCTC 2 cut(s) 558, 590
BpmI CTGGAG 2 cut(s) 254, 585
BpuEI CTTGAG 3 cut(s) 237, 325, 506
BsaHI GRCGYC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 186, 562, 654, 655
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 786
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 180
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 2 cut(s) 564, 656
BseDI CCNNGG 4 cut(s) 186, 562, 654, 655
BseGI GGATG 2 cut(s) 70, 115
BseLI CCNNNNNNNGG 1 cut(s) 786
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 154, 767
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 612, 674
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 752
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 786
BsmAI GTCTC 2 cut(s) 197, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 752
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 153, 766
BspEI TCCGGA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 4 cut(s) 186, 562, 654, 655
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 564, 656
Bst4CI ACNGT 2 cut(s) 407, 731
BstACI GRCGYC 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 235, 483, 498
BstDEI CTNAG 2 cut(s) 140, 753
BstF5I GGATG 2 cut(s) 70, 115
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 197, 524
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 514, 764, 773
BstNI CCWGG 2 cut(s) 564, 656
BstNSI RCATGY 2 cut(s) 500, 675
BstPAI GACNNNNGTC 2 cut(s) 77, 812
BstSCI CCNGG 2 cut(s) 562, 654
BstV1I GCAGC 2 cut(s) 612, 674
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 2 cut(s) 70, 115
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 683
Cac8I GCNNGC 3 cut(s) 235, 483, 498
CfoI GCGC 1 cut(s) 591
CseI GACGC 2 cut(s) 506, 617
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviAII CATG 5 cut(s) 38, 46, 328, 497, 672
DdeI CTNAG 2 cut(s) 140, 753
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 752
Eco31I GGTCTC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 750
EcoRI GAATTC 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 562, 654
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 5 cut(s) 41, 49, 331, 500, 675
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 85
FatI CATG 5 cut(s) 37, 45, 327, 496, 671
Fnu4HI GCNGC 2 cut(s) 626, 663
FokI GGATG 2 cut(s) 77, 122
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 626, 663
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 626, 663
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 254, 585
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 107
HgaI GACGC 2 cut(s) 506, 617
HhaI GCGC 1 cut(s) 591
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 5 cut(s) 41, 49, 331, 500, 675
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 2 cut(s) 245, 479
HinfI GANTC 3 cut(s) 440, 534, 688
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 551, 568
Hpy166II GTNNAC 3 cut(s) 373, 559, 727
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 107, 254, 342, 538
Hpy8I GTNNAC 3 cut(s) 373, 559, 727
HpyAV CCTTC 3 cut(s) 404, 524, 613
HpyCH4III ACNGT 2 cut(s) 407, 731
HpyCH4V TGCA 7 cut(s) 170, 221, 278, 428, 485, 496, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 514, 764, 773
HpyF3I CTNAG 2 cut(s) 140, 753
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 5 cut(s) 41, 49, 331, 500, 675
HspAI GCGC 1 cut(s) 589
Kpn2I TCCGGA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 566, 659
Lsp1109I GCAGC 2 cut(s) 612, 674
LweI GCATC 5 cut(s) 55, 100, 161, 415, 754
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 185, 293, 305, 539
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 6 cut(s) 102, 117, 366, 414, 429, 570
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 4 cut(s) 48, 149, 349, 352
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 2 cut(s) 90, 414
MseI TTAA 4 cut(s) 213, 372, 432, 510
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 564, 656
MvaI CCWGG 2 cut(s) 564, 656
MwoI GCNNNNNNNGC 3 cut(s) 514, 764, 773
NdeII GATC 1 cut(s) 310
NlaIII CATG 5 cut(s) 41, 49, 331, 500, 675
NmeAIII GCCGAG 2 cut(s) 366, 771
NspI RCATGY 2 cut(s) 500, 675
PaeI GCATGC 1 cut(s) 500
PasI CCCWGGG 1 cut(s) 655
PdmI GAANNNNTTC 2 cut(s) 90, 414
PfeI GAWTC 2 cut(s) 440, 688
PflMI CCANNNNNTGG 1 cut(s) 786
PkrI GCNGC 2 cut(s) 627, 664
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PshAI GACNNNNGTC 2 cut(s) 77, 812
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 752
Psp6I CCWGG 2 cut(s) 562, 654
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 562, 654
PsuI RGATCY 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 752
SaqAI TTAA 4 cut(s) 213, 372, 432, 510
SatI GCNGC 2 cut(s) 626, 663
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 2 cut(s) 564, 656
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 5 cut(s) 55, 100, 161, 415, 754
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 252, 340, 521
SmoI CTYRAG 3 cut(s) 252, 340, 521
SphI GCATGC 1 cut(s) 500
Sse9I AATT 6 cut(s) 102, 117, 366, 414, 429, 570
SspI AATATT 1 cut(s) 205
SstI GAGCTC 1 cut(s) 752
StyD4I CCNGG 2 cut(s) 562, 654
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 407, 731
TaqI TCGA 1 cut(s) 537
TasI AATT 6 cut(s) 102, 117, 366, 414, 429, 570
TfiI GAWTC 2 cut(s) 440, 688
Tru1I TTAA 4 cut(s) 213, 372, 432, 510
Tru9I TTAA 4 cut(s) 213, 372, 432, 510
TscAI CASTG 2 cut(s) 57, 690
TseI GCWGC 2 cut(s) 625, 662
TspDTI ATGAA 4 cut(s) 135, 344, 453, 632
TspRI CASTG 2 cut(s) 57, 690
Van91I CCANNNNNTGG 1 cut(s) 786
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 102, 414
XceI RCATGY 2 cut(s) 500, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XmnI GAANNNNTTC 2 cut(s) 90, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.