Rmu_sc0029435.1_g000001

Short-chain dehydrogenase reductase family 42E member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029435.1
OG0012481
Physical Location & Seq
Forward (+)
1 .. 1861
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029435.1_g000001.1.cds

Sequence Viewer

Length: 1088 bp
tcggggtcgaaaggcttgtgtatgtgagcacatacaatgttgtgtttgggggaaaggagattgtgagtgggaatgaggccgtaagctattttcctattgatagtcatgaggatccatacggcagaagtaaatccattgctgagcagttggttcttaagtacaatgctcgtcctttcaggacgaagaatgggaagtgtctgtatacctgtgcggttcgtccagctgctatctatggacctggtgaagaaaggcaccttccgaggattgtgtccctagcaaagttaggcttaattccattcaaaattggcgaagcaaatgtgaaaacagactggatttatgtggataacctagtccttgctctcatattggcaagcatgggccttttgcatgacattcctgggagagagaaagaaagacaacccatagctgctggccaaccatattttgtatcggacgggtctccggtcaacacctttgagttcatccgaccactgctcagaagcttggattatgatctaccaaaggcttcattgtctgtacctcaagctcttcgtttaggaaggattttttgggcagtctatacaatattatatccatggttggaccgatggtggattcctcagccgcttatccttcctgctgaagtatacaaggttggtgttacgcactacttctcttatcttaaagccaaggaagagcttggctatgccccagtggtgactcctcgggagggcatggctactacaatctcatactggcaggagaggaaaaggaaaactctggacgggcctacaatatacgcatggctattttgtgtgattggcatgggtatagtattttgtgctgcttatttgccagacatcggacctgtaccactctttagagctgttagcctcttctttttccggtcaatgtggatagtgcggatggtattccttctagccactgcattgcatgttggagaggctgtgtatgcgtggaaactggcaaaacgggtcgatcctgctaacgcaagaggatggttctggcagacctttgctctcggggtgttttcactacgtcttttgttgaagaaagcaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD DUF4499

Protein Analysis

361

Amino Acids

40.96

Weight (kDa)

9.55

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33630
fragaria_vesca FvH4_5g26130 FvH4_5g26130
malus_domestica MD06G1004300.v1.1
prunus_persica Prupe.5G005700_v2.0.a1 Prupe.5G005700_v2.0.a1 Prupe.5G005700_v2.0.a1
pyrus_communis pycom06g00410
rosa_chinensis RchiOBHm_Chr7g0216661
rosa_laevigata RLG00000002552
rosa_multiflora Rmu_sc0029435.1_g000001 Rmu_ssc0000117.1_g000009
rosa_roxburghii Rroxscaffold_3G00243030
rosa_rugosa Rorug07G0161500
rosa_samantha Rh7AG301300 Rh7BG292800 Rh7CG319900 Rh7DG301900
rosa_wichuraiana Rw7G025570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 2 cut(s) 202, 647
AciI CCGC 3 cut(s) 211, 625, 924
AclWI GGATC 3 cut(s) 106, 119, 994
AcoI YGGCCR 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 3 cut(s) 160, 539, 872
AfiI CCNNNNNNNGG 2 cut(s) 730, 862
AflII CTTAAG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 300, 1071
AjnI CCWGG 2 cut(s) 237, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 7 cut(s) 86, 223, 427, 503, 547, 699, 886
AluI AGCT 7 cut(s) 86, 223, 427, 503, 547, 699, 886
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 3 cut(s) 106, 119, 994
Ama87I CYCGRG 2 cut(s) 725, 1042
AoxI GGCC 4 cut(s) 77, 378, 432, 787
ApeKI GCWGC 3 cut(s) 223, 427, 844
AspS9I GGNCC 5 cut(s) 235, 378, 603, 787, 865
AsuHPI GGTGA 2 cut(s) 253, 729
AvaI CYCGRG 2 cut(s) 725, 1042
AvaII GGWCC 3 cut(s) 235, 603, 865
BalI TGGCCA 1 cut(s) 434
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 620
BbvI GCAGC 3 cut(s) 210, 414, 831
BccI CCATC 3 cut(s) 602, 921, 1013
BceAI ACGGC 2 cut(s) 64, 135
BciT130I CCWGG 2 cut(s) 239, 398
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 3 cut(s) 274, 349, 940
BfrI CTTAAG 1 cut(s) 154
BisI GCNGC 4 cut(s) 224, 428, 625, 845
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 4 cut(s) 225, 429, 626, 846
Bme1390I CCNGG 2 cut(s) 239, 398
Bme18I GGWCC 3 cut(s) 235, 603, 865
BmeT110I CYCGRG 2 cut(s) 725, 1042
BmgT120I GGNCC 5 cut(s) 235, 378, 603, 787, 865
BmiI GGNNCC 2 cut(s) 113, 253
BmrFI CCNGG 2 cut(s) 239, 398
BmrI ACTGGG 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 706
Bpu10I CCTNAGC 1 cut(s) 620
Bpu1102I GCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 5 cut(s) 259, 397, 595, 689, 724
BsaWI WCCGGW 2 cut(s) 462, 905
BsaXI ACNNNNNCTCC 2 cut(s) 953, 983
Bsc4I CCNNNNNNNGG 2 cut(s) 730, 862
Bse1I ACTGG 4 cut(s) 334, 712, 760, 989
Bse3DI GCAATG 2 cut(s) 134, 949
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 2 cut(s) 239, 398
BseDI CCNNGG 5 cut(s) 259, 397, 595, 689, 724
BseGI GGATG 3 cut(s) 482, 932, 1024
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 2 cut(s) 730, 862
BseMI GCAATG 2 cut(s) 134, 949
BseMII CTCAG 3 cut(s) 131, 510, 634
BseNI ACTGG 4 cut(s) 334, 712, 760, 989
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 3 cut(s) 210, 414, 831
BshFI GGCC 4 cut(s) 79, 380, 434, 789
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 725, 1042
BsiSI CCGG 2 cut(s) 463, 906
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 730, 862
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 4 cut(s) 79, 380, 434, 789
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 2 cut(s) 725, 1042
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 111, 513, 999
Bsp1720I GCTNAGC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 3 cut(s) 211, 625, 924
BspANI GGCC 4 cut(s) 79, 380, 434, 789
BspCNI CTCAG 3 cut(s) 132, 509, 633
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 113, 253
BspPI GGATC 3 cut(s) 106, 119, 994
BspQI GCTCTTC 2 cut(s) 554, 689
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 134, 949
BsrI ACTGG 4 cut(s) 334, 712, 760, 989
BssECI CCNNGG 5 cut(s) 259, 397, 595, 689, 724
BssMI GATC 3 cut(s) 111, 513, 999
BssNAI GTATAC 2 cut(s) 203, 648
BssT1I CCWWGG 2 cut(s) 595, 689
Bst1107I GTATAC 2 cut(s) 203, 648
Bst2UI CCWGG 2 cut(s) 239, 398
Bst6I CTCTTC 3 cut(s) 554, 689, 901
BstAFI CTTAAG 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 372, 432
BstDEI CTNAG 3 cut(s) 140, 496, 620
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 3 cut(s) 482, 932, 1024
BstKTI GATC 3 cut(s) 114, 516, 1002
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 3 cut(s) 111, 513, 999
BstMWI GCNNNNNNNGC 1 cut(s) 973
BstNI CCWGG 2 cut(s) 239, 398
BstNSI RCATGY 1 cut(s) 958
BstSCI CCNGG 2 cut(s) 237, 396
BstV1I GCAGC 3 cut(s) 210, 414, 831
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 2 cut(s) 203, 648
BsuRI GGCC 4 cut(s) 79, 380, 434, 789
BtgI CCRYGG 1 cut(s) 595
BtsCI GGATG 3 cut(s) 482, 932, 1024
BtsI GCAGTG 2 cut(s) 490, 944
BtsIMutI CAGTG 3 cut(s) 490, 719, 944
Cac8I GCNNGC 2 cut(s) 372, 432
CciI TCATGA 1 cut(s) 105
Cfr13I GGNCC 5 cut(s) 235, 378, 603, 787, 865
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 3 cut(s) 159, 538, 871
CviAII CATG 8 cut(s) 106, 375, 388, 596, 735, 803, 825, 955
CviQI GTAC 3 cut(s) 159, 538, 871
DdeI CTNAG 3 cut(s) 140, 496, 620
DpnI GATC 3 cut(s) 113, 515, 1001
DpnII GATC 3 cut(s) 111, 513, 999
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 3 cut(s) 554, 689, 901
EarI CTCTTC 3 cut(s) 554, 689, 901
Eco130I CCWWGG 2 cut(s) 595, 689
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 235, 603, 865
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 2 cut(s) 725, 1042
EcoRII CCWGG 2 cut(s) 237, 396
EcoT14I CCWWGG 2 cut(s) 595, 689
ErhI CCWWGG 2 cut(s) 595, 689
FaeI CATG 8 cut(s) 109, 378, 391, 599, 738, 806, 828, 958
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 1 cut(s) 255
FatI CATG 8 cut(s) 105, 374, 387, 595, 734, 802, 824, 954
FblI GTMKAC 2 cut(s) 202, 647
Fnu4HI GCNGC 4 cut(s) 224, 428, 625, 845
FokI GGATG 3 cut(s) 469, 939, 1031
Fsp4HI GCNGC 4 cut(s) 224, 428, 625, 845
FspBI CTAG 3 cut(s) 274, 349, 940
GluI GCNGC 4 cut(s) 224, 428, 625, 845
HaeIII GGCC 4 cut(s) 79, 380, 434, 789
HapII CCGG 2 cut(s) 463, 906
Hin1II CATG 8 cut(s) 109, 378, 391, 599, 738, 806, 828, 958
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 2 cut(s) 615, 720
HpaII CCGG 2 cut(s) 463, 906
HphI GGTGA 2 cut(s) 253, 729
Hpy166II GTNNAC 3 cut(s) 203, 468, 648
Hpy188I TCNGA 5 cut(s) 260, 453, 487, 499, 865
Hpy188III TCNNGA 4 cut(s) 106, 177, 727, 781
Hpy8I GTNNAC 3 cut(s) 203, 468, 648
HpyAV CCTTC 4 cut(s) 265, 554, 643, 946
HpyCH4IV ACGT 1 cut(s) 1059
HpyCH4V TGCA 3 cut(s) 387, 949, 954
HpyF10VI GCNNNNNNNGC 1 cut(s) 973
HpyF3I CTNAG 3 cut(s) 140, 496, 620
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 8 cut(s) 109, 378, 391, 599, 738, 806, 828, 958
Kzo9I GATC 3 cut(s) 111, 513, 999
LguI GCTCTTC 2 cut(s) 554, 689
Lsp1109I GCAGC 3 cut(s) 210, 414, 831
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 3 cut(s) 274, 349, 940
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 2 cut(s) 660, 717
MalI GATC 3 cut(s) 113, 515, 1001
MboI GATC 3 cut(s) 111, 513, 999
MboII GAAGA 6 cut(s) 195, 256, 541, 706, 888, 1083
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 2 cut(s) 290, 302
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 714
MmeI TCCRAC 3 cut(s) 510, 581, 939
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 3 cut(s) 155, 289, 683
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 223
MspCI CTTAAG 1 cut(s) 154
MspI CCGG 2 cut(s) 463, 906
MspR9I CCNGG 2 cut(s) 239, 398
MvaI CCWGG 2 cut(s) 239, 398
MwoI GCNNNNNNNGC 1 cut(s) 973
NcoI CCATGG 1 cut(s) 595
NdeII GATC 3 cut(s) 111, 513, 999
NlaIII CATG 8 cut(s) 109, 378, 391, 599, 738, 806, 828, 958
NlaIV GGNNCC 2 cut(s) 113, 253
NmuCI GTSAC 1 cut(s) 717
NspI RCATGY 1 cut(s) 958
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 2 cut(s) 554, 689
PfeI GAWTC 1 cut(s) 615
PkrI GCNGC 4 cut(s) 225, 429, 626, 846
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 237, 396
PspGI CCWGG 2 cut(s) 237, 396
PspN4I GGNNCC 2 cut(s) 113, 253
PspPI GGNCC 5 cut(s) 235, 378, 603, 787, 865
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 3 cut(s) 160, 539, 872
RsaNI GTAC 3 cut(s) 159, 538, 871
SapI GCTCTTC 2 cut(s) 554, 689
SaqAI TTAA 3 cut(s) 155, 289, 683
SatI GCNGC 4 cut(s) 224, 428, 625, 845
Sau3AI GATC 3 cut(s) 111, 513, 999
Sau96I GGNCC 5 cut(s) 235, 378, 603, 787, 865
SchI GAGTC 1 cut(s) 714
ScrFI CCNGG 2 cut(s) 239, 398
SduI GDGCHC 1 cut(s) 31
SexAI ACCWGGT 1 cut(s) 237
SinI GGWCC 3 cut(s) 235, 603, 865
SmlI CTYRAG 2 cut(s) 154, 542
SmoI CTYRAG 2 cut(s) 154, 542
Sse9I AATT 2 cut(s) 290, 302
SsiI CCGC 3 cut(s) 211, 625, 924
SspI AATATT 1 cut(s) 587
SspMI CTAG 3 cut(s) 274, 349, 940
StyD4I CCNGG 2 cut(s) 237, 396
StyI CCWWGG 2 cut(s) 595, 689
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 2 cut(s) 8, 998
TaqII GACCGA 1 cut(s) 620
TasI AATT 2 cut(s) 290, 302
TatI WGTACW 1 cut(s) 158
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 1 cut(s) 615
Tru1I TTAA 3 cut(s) 155, 289, 683
Tru9I TTAA 3 cut(s) 155, 289, 683
TscAI CASTG 3 cut(s) 497, 719, 951
TseFI GTSAC 1 cut(s) 717
TseI GCWGC 3 cut(s) 223, 427, 844
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 2 cut(s) 471, 518
TspRI CASTG 3 cut(s) 497, 719, 951
Vha464I CTTAAG 1 cut(s) 154
VpaK11BI GGWCC 3 cut(s) 235, 603, 865
XceI RCATGY 1 cut(s) 958
XmiI GTMKAC 2 cut(s) 202, 647
XspI CTAG 3 cut(s) 274, 349, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.