Rh7CG304900

Belongs to the profilin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018295
Physical Location & Seq
Forward (+)
31917753 .. 31924937
7185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG304900.1

Sequence Viewer

Length: 615 bp
ATGGAACTCTGGAAAATTCTTGAGTCAGGTCAGAGCATATCTGTTGCAACATTCGTCGAGTCTAGTAAGCAGAGGAAATGGATTGGGGTTTTGTTCATAAAGCTTGGGACAAGTGGGCTTCTTTCAGTGTTGGCTCTTCAGGTCACTGCTCAACTCCTTAGCCTTGTCTCTCTGTGTCTCTGTATTATACAAGTTTGTAAATTCCGGTTTTCATGCATTCAACAATGGTGTATAGGTCAGCCGCTAAAAGCTGCTATACTCGTCAACTATGACCCAACTGGTCCGTCTCGCCTCTTGTCTACCATTGTCGAACAAGAAGGCATAAAAGTGAATGCCATTGAACTGAGCCAATTCATTGACTTCATCAAATGTGACAAGCTCCATACAGAGAGTTTCATTATTGGGCTCAACCAATATATTGTCACATCAATTCATGAGAATTGGTTCTGTGCAAGGTGCATGAACACATCAAAACCAGCTGGTGAAGGGGCTATCATCATGCAAACAGCAACATTTATCTTGGTTGCACTATATGATGGTTCTATTGGCTCAGCTTCTCGTGCTATGTTTGCTGTTGATCAGTTTGCGTGGCAATTAAATCGACGAAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Profilin

Protein Analysis

204

Amino Acids

22.69

Weight (kDa)

8.43

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 100 - 202 3.2e-10 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19410 AT4G19410 AT5G45280 AT5G45280
rosa_chinensis RchiOBHm_Chr7g0214961
rosa_multiflora Rmu_sc0004651.1_g000006 Rmu_ssc0000134.1_g000034
rosa_samantha Rh7AG285900 Rh7CG304900 Rh7DG289100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 15, 200
AcuI CTGAAG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 221, 341
AluBI AGCT 5 cut(s) 103, 251, 379, 479, 554
AluI AGCT 5 cut(s) 103, 251, 379, 479, 554
Alw26I GTCTC 3 cut(s) 172, 182, 291
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 15, 200
Asp700I GAANNNNTTC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 558
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 172, 182, 291
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 242, 252
BlpI GCTNAGC 1 cut(s) 550
BlsI GCNGC 2 cut(s) 243, 253
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 335, 564
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 3 cut(s) 172, 182, 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 216, 337
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 577
Bsp1720I GCTNAGC 1 cut(s) 550
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 336, 563
BspHI TCATGA 1 cut(s) 433
BspQI GCTCTTC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 283
BssMI GATC 1 cut(s) 577
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 158, 344, 550
BstKTI GATC 1 cut(s) 580
BstMAI GTCTC 3 cut(s) 172, 182, 291
BstMBI GATC 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 560, 569
BstV1I GCAGC 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 132, 144
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 4 cut(s) 213, 434, 460, 499
DdeI CTNAG 3 cut(s) 158, 344, 550
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 4 cut(s) 216, 437, 463, 502
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 212, 433, 459, 498
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 242, 252
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 242, 252
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 242, 252
HapII CCGG 1 cut(s) 205
Hin1II CATG 4 cut(s) 216, 437, 463, 502
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 23, 59
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 265, 300
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 10, 20, 434
Hpy8I GTNNAC 2 cut(s) 265, 300
Hpy99I CGWCG 2 cut(s) 59, 606
HpyAV CCTTC 2 cut(s) 311, 479
HpyCH4V TGCA 6 cut(s) 47, 216, 452, 459, 502, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 569
HpyF3I CTNAG 3 cut(s) 158, 344, 550
Hsp92II CATG 4 cut(s) 216, 437, 463, 502
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 1 cut(s) 577
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 6 cut(s) 12, 125, 218, 264, 465, 489
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 142, 371, 421
MalI GATC 1 cut(s) 579
MboI GATC 1 cut(s) 577
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 6 cut(s) 15, 200, 350, 429, 439, 593
MlyI GAGTC 2 cut(s) 32, 68
MnlI CCTC 2 cut(s) 66, 302
Mph1103I ATGCAT 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 205
Mva1269I GAATGC 2 cut(s) 216, 337
MwoI GCNNNNNNNGC 2 cut(s) 560, 569
NdeII GATC 1 cut(s) 577
NlaIII CATG 4 cut(s) 216, 437, 463, 502
NmuCI GTSAC 3 cut(s) 142, 371, 421
NsiI ATGCAT 1 cut(s) 218
PagI TCATGA 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 2 cut(s) 216, 337
PdmI GAANNNNTTC 1 cut(s) 443
PkrI GCNGC 2 cut(s) 243, 253
PleI GAGTC 2 cut(s) 31, 67
PpsI GAGTC 2 cut(s) 31, 67
PspPI GGNCC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 2 cut(s) 242, 252
Sau3AI GATC 1 cut(s) 577
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 32, 68
SduI GDGCHC 1 cut(s) 408
SetI ASST 9 cut(s) 31, 105, 144, 238, 253, 381, 458, 481, 556
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 6 cut(s) 15, 200, 350, 429, 439, 593
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 63
TaqI TCGA 3 cut(s) 57, 309, 601
TasI AATT 6 cut(s) 15, 200, 350, 429, 439, 593
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 2 cut(s) 132, 151
TseFI GTSAC 3 cut(s) 142, 371, 421
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 3 cut(s) 142, 371, 421
TspDTI ATGAA 7 cut(s) 85, 201, 343, 352, 385, 422, 476
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 132, 151
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 2 cut(s) 15, 200
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.