Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0020878

Physical Location & Seq

Genomic Coordinates Reverse (-)

41617645 .. 41618313

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCAGTGCCAAAAAAGCGCACCTCTAGTTCAAAAAAACGCATTCGTAAAAATATTTGGAAAAGGAAAGGATATTGGGCAGCATTGAAAACTACATTAACAAAAGCTTTTTCGTTAGCGAAATCTCTTTCTACCGGTAGCTCAAAAAGTTTTTTTTGTGTGACAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

57

Amino Acids

6.45

Weight (kDa)

11.67

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32p	PF01783	2 - 43	6e-06	Ribosomal L32p protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01020
rosa_chinensis	RchiOBHm_Chr4g0421191 RchiOBHm_CPg0502841
rosa_wichuraiana	Rw4G018810 Rw4G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	33, 88
AluBI	AGCT	2 cut(s)	107, 141
AluI	AGCT	2 cut(s)	107, 141
ApeKI	GCWGC	1 cut(s)	80
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	134
CviJI	RGCY	2 cut(s)	107, 141
CviKI_1	RGCY	2 cut(s)	107, 141
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	27
FspEI	CC	9 cut(s)	24, 37, 43, 49, 54, 61, 62, 120, 148
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	105
HpaII	CCGG	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HspAI	GCGC	1 cut(s)	19
LpnPI	CCDG	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	160
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	98
MspI	CCGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	42
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	81
SetI	ASST	3 cut(s)	26, 109, 143
SgeI	CNNG	2 cut(s)	39, 147
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	160
TspRI	CASTG	1 cut(s)	12
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.