AT1G01230

ORMDL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016550
Physical Location & Seq
Forward (+)
97412 .. 99240
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01230.1

Sequence Viewer

Length: 474 bp
ATGGCGAATCTGTATGTGAAAGCGGTTCCACCACCGGATATGAATAGGAATACGGAATGGTTCATGTATCCAGGAGTTTGGACGACTTACATGCTTATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGTCTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAACGTATCACAGCTTCCACTGGATGAAAGGAACTCCTTTTGCAGATGACCAAGGAATCTACAATGGTTTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATTTCTTACCCTAGTTCCTGTTGTTCTGTACTTGATTGCATCGCATACAACAGATTACAGACATCCATGGCTGTTCCTCAACACACTCGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAACATGCACAAGGTACGCATCTTTGGTATCAATGGTGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ORMDL

Protein Analysis

157

Amino Acids

18.2

Weight (kDa)

9.1

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ORMDL PF04061 15 - 149 1.2e-51 ORMDL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01230
fragaria_vesca FvH4_7g17010
malus_domestica MD01G1084800.v1.1 MD07G1153400.v1.1
prunus_persica Prupe.2G192400_v2.0.a1
pyrus_communis pycom07g15120
rosa_chinensis RchiOBHm_Chr1g0360391
rosa_laevigata RLG00000027811
rosa_multiflora Rmu_ssc0000368.1_g000077
rosa_roxburghii Rroxscaffold_4G00296160
rosa_rugosa Rorug01G0276600
rosa_samantha Rh1BG255700 Rh1DG285500
rosa_wichuraiana Rw1G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 298, 304
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 2 cut(s) 338, 444
AfiI CCNNNNNNNGG 1 cut(s) 151
AjnI CCWGG 2 cut(s) 70, 145
AluBI AGCT 2 cut(s) 201, 292
AluI AGCT 2 cut(s) 201, 292
Alw26I GTCTC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 308
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 2 cut(s) 72, 147
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 72, 147
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 72, 147
BmsI GCATC 2 cut(s) 356, 456
BoxI GACNNNNGTC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 145, 238, 374
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 72, 147
BseDI CCNNGG 3 cut(s) 145, 238, 374
BseGI GGATG 2 cut(s) 216, 370
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 3 cut(s) 23, 298, 304
BspLI GGNNCC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 145, 238, 374
BssT1I CCWWGG 2 cut(s) 238, 374
Bst2UI CCWGG 2 cut(s) 72, 147
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 216, 370
BstMAI GTCTC 1 cut(s) 136
BstNI CCWGG 2 cut(s) 72, 147
BstNSI RCATGY 2 cut(s) 94, 436
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 70, 145
BstXI CCANNNNNNTGG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 216, 370
BtsIMutI CAGTG 1 cut(s) 205
Csp6I GTAC 2 cut(s) 337, 443
CviAII CATG 4 cut(s) 64, 91, 375, 433
CviJI RGCY 5 cut(s) 115, 155, 201, 292, 379
CviKI_1 RGCY 5 cut(s) 115, 155, 201, 292, 379
CviQI GTAC 2 cut(s) 337, 443
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 238, 374
EcoRII CCWGG 2 cut(s) 70, 145
EcoT14I CCWWGG 2 cut(s) 238, 374
ErhI CCWWGG 2 cut(s) 238, 374
FaeI CATG 4 cut(s) 67, 94, 378, 436
FaiI YATR 7 cut(s) 15, 41, 65, 92, 354, 376, 434
FatI CATG 4 cut(s) 63, 90, 374, 432
FauI CCCGC 1 cut(s) 305
FokI GGATG 2 cut(s) 223, 357
FspBI CTAG 1 cut(s) 320
HapII CCGG 1 cut(s) 35
Hin1II CATG 4 cut(s) 67, 94, 378, 436
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HinfI GANTC 2 cut(s) 7, 243
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 230, 347, 436
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 4 cut(s) 67, 94, 378, 436
LpnPI CCDG 8 cut(s) 48, 57, 84, 120, 132, 159, 193, 339
LweI GCATC 2 cut(s) 356, 456
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 2 cut(s) 94, 97
MluCI AATT 1 cut(s) 308
MnlI CCTC 1 cut(s) 395
MseI TTAA 2 cut(s) 168, 257
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 72, 147
MvaI CCWGG 2 cut(s) 72, 147
NcoI CCATGG 1 cut(s) 374
NlaIII CATG 4 cut(s) 67, 94, 378, 436
NlaIV GGNNCC 1 cut(s) 27
NspI RCATGY 2 cut(s) 94, 436
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 180
PfeI GAWTC 2 cut(s) 7, 243
PfoI TCCNGGA 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 70, 145
PspGI CCWGG 2 cut(s) 70, 145
PspN4I GGNNCC 1 cut(s) 27
RsaI GTAC 2 cut(s) 338, 444
RsaNI GTAC 2 cut(s) 337, 443
SaqAI TTAA 2 cut(s) 168, 257
ScrFI CCNGG 2 cut(s) 72, 147
SetI ASST 4 cut(s) 194, 203, 294, 444
SfaNI GCATC 2 cut(s) 356, 456
Sse9I AATT 1 cut(s) 308
SsiI CCGC 3 cut(s) 23, 298, 304
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 70, 145
StyI CCWWGG 2 cut(s) 238, 374
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 194
TasI AATT 1 cut(s) 308
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 7, 243
Tru1I TTAA 2 cut(s) 168, 257
Tru9I TTAA 2 cut(s) 168, 257
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 52, 56, 227
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 212
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 94, 436
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.