Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000109

Physical Location & Seq

Genomic Coordinates Reverse (-)

38885282 .. 38887841

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGTTCCAAATTTATAAAGTTTCGAACTCCGCGTCTGGAATGGCTGTGCATGATGATTGTAAGCTCAAGTTCTTGGAACTGAAAGCGAAGAGGAACCACCGATTCATTGTGTTCAAGATCGAGGAGAAGATACAACAGGTGATTGTAGAGAAGCTTGGAGGTCCTGATGAAAGCTACGAGGACTTCACTAACTCCATACCTGCTGATGAGTGCCGCTATGCTGTCTACGATTTTGATTTCACAACCGATGAGAACTGCCAAAAAAGCAAAATCTTCTTCATTGCATGGTCGCCTGATACGTCGAGGGTGAGAAGTAAGATGCTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGCATTCAAGTGGAGTTGCAGGCAACAGATCCTAGTGAGATGAGTTTGGATGTCATAAAAGGCCGAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

5.75

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	14 - 144	7.9e-43	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis	RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata	RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora	Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii	Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa	Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha	Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana	Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	33, 217
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	118, 352, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	4 cut(s)	67, 157, 177, 336
AluI	AGCT	4 cut(s)	67, 157, 177, 336
Alw21I	GWGCWC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	12
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	154, 322
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	370, 421
BseMI	GCAATG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	120, 394
BspACI	CCGC	2 cut(s)	33, 217
BspANI	GGCC	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	120, 394
BssT1I	CCWWGG	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	334, 387
BstF5I	GGATG	2 cut(s)	370, 421
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	123, 397
BstMBI	GATC	2 cut(s)	120, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	370, 421
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	334, 387
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	24
CviAII	CATG	2 cut(s)	53, 288
CviJI	RGCY	6 cut(s)	47, 67, 157, 177, 336, 429
CviKI_1	RGCY	6 cut(s)	47, 67, 157, 177, 336, 429
DpnI	GATC	2 cut(s)	122, 396
DpnII	GATC	2 cut(s)	120, 394
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	2 cut(s)	56, 291
FaiI	YATR	7 cut(s)	18, 54, 200, 222, 289, 330, 422
FatI	CATG	2 cut(s)	52, 287
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	2 cut(s)	377, 428
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	429
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	56, 291
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	105, 348
HphI	GGTGA	2 cut(s)	154, 322
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	39, 118, 167, 352
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	52, 287, 332, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	56, 291
Kzo9I	GATC	2 cut(s)	120, 394
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	6 cut(s)	24, 125, 180, 216, 309, 371
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	302
MalI	GATC	2 cut(s)	122, 396
MboI	GATC	2 cut(s)	120, 394
MboII	GAAGA	4 cut(s)	103, 142, 268, 271
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	2 cut(s)	12, 359
MnlI	CCTC	6 cut(s)	87, 118, 155, 175, 300, 348
MslI	CAYNNNNRTG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	369
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	2 cut(s)	120, 394
NlaIII	CATG	2 cut(s)	56, 291
NlaIV	GGNNCC	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 299
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	105, 348
PkrI	GCNGC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	374
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	120, 394
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	8 cut(s)	69, 144, 159, 166, 179, 205, 305, 338
SfaNI	GCATC	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	12, 359
SsiI	CCGC	2 cut(s)	33, 217
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	339
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	26, 123, 305
TasI	AATT	2 cut(s)	12, 359
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	105, 348
TspDTI	ATGAA	3 cut(s)	97, 186, 271
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.