RLG00000036232

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000109
Physical Location & Seq
Forward (+)
77858174 .. 77859536
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036232

Sequence Viewer

Length: 555 bp
ATGGTGGACGATGTTTCTGCAAGCCTCACTGTTGCACTGGCAATCTTCAACAAGGGTTGGGTGTCGTTTGGAGAGCCCGGCAAGTTAGCACGGTCCTCAAATCATTACGCGTTTGGTCAGCTTTTGACTCATAAACGAGTCAACCAGAAAGCCTTAACGGGAACCATGTTTAGAATATGGGGGATGAAGCAGAGACTGTCCATCAGAGATCTGGGCAATTGCTTGATCTTCTCGAGAAGGAGGGGGCATGTCAGTGTCTCCTCCTCCTCCTCTAAAGAAGGTGGGCAGGCCAATTGGAACCATAATAAACCCAAGATGGTGGATATCAAGCCTTGGAAGCTCAAGGCAGAGGTGGGTACTGTGAAGCAGCCCAGAAAGAAGCGGGTTCCAAAGGCTTTGGAGGGAGTTGTGAAACGAGCTCTGGAGCTTGATGTTGATAAGGAATCCCCTATAGAAGAGTCCATGGATATTGAGGCTAAGATACCAGTACAGGTAGAGAGCTCAGAGGCATTGGATACTACTGTTGCAGATGATTTGGGGTCCTCCCTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.33

Weight (kDa)

9.68

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 382
AfaI GTAC 2 cut(s) 358, 489
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 6 cut(s) 121, 340, 419, 427, 501, 552
AluI AGCT 6 cut(s) 121, 340, 419, 427, 501, 552
Alw21I GWGCWC 2 cut(s) 421, 503
Alw26I GTCTC 2 cut(s) 187, 262
AlwNI CAGNNNCTG 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 93, 540
AsuC2I CCSGG 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 93, 540
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BanII GRGCYC 3 cut(s) 78, 421, 503
Bbv12I GWGCWC 2 cut(s) 421, 503
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 209, 310
BcgI CGANNNNNNTGC 1 cut(s) 33
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 187, 262
BfaI CTAG 1 cut(s) 553
BfmI CTRYAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 208
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 93, 540
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 93, 540
BmiI GGNNCC 4 cut(s) 163, 299, 387, 541
BmrFI CCNGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 332, 462
Bse1I ACTGG 2 cut(s) 42, 485
BseDI CCNNGG 2 cut(s) 332, 462
BseGI GGATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 2 cut(s) 42, 485
BseRI GAGGAG 4 cut(s) 250, 253, 256, 259
BseXI GCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 421, 503
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 187, 262
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 78, 421, 503
Bsp143I GATC 2 cut(s) 208, 225
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 515
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 4 cut(s) 163, 299, 387, 541
BsrI ACTGG 2 cut(s) 42, 485
BssECI CCNNGG 2 cut(s) 332, 462
BssMI GATC 2 cut(s) 208, 225
BssT1I CCWWGG 2 cut(s) 332, 462
Bst4CI ACNGT 5 cut(s) 31, 93, 198, 361, 523
Bst6I CTCTTC 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 22, 288
BstDEI CTNAG 3 cut(s) 477, 502, 548
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 2 cut(s) 211, 228
BstMAI GTCTC 2 cut(s) 187, 262
BstMBI GATC 2 cut(s) 208, 225
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 208
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 27, 35, 259
Cac8I GCNNGC 2 cut(s) 22, 288
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 93, 540
Csp6I GTAC 2 cut(s) 357, 488
CviAII CATG 3 cut(s) 166, 248, 463
CviQI GTAC 2 cut(s) 357, 488
DdeI CTNAG 3 cut(s) 477, 502, 548
DpnI GATC 2 cut(s) 210, 227
DpnII GATC 2 cut(s) 208, 225
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Ecl136II GAGCTC 2 cut(s) 419, 501
Eco130I CCWWGG 2 cut(s) 332, 462
Eco24I GRGCYC 3 cut(s) 78, 421, 503
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 93, 540
Eco53kI GAGCTC 2 cut(s) 419, 501
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 2 cut(s) 419, 501
EcoO109I RGGNCCY 1 cut(s) 540
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 332, 462
EcoT38I GRGCYC 3 cut(s) 78, 421, 503
ErhI CCWWGG 2 cut(s) 332, 462
FaeI CATG 3 cut(s) 169, 251, 466
FaiI YATR 7 cut(s) 132, 167, 178, 249, 303, 452, 464
FatI CATG 3 cut(s) 165, 247, 462
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 3 cut(s) 78, 421, 503
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 553
GluI GCNGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 78
Hin1II CATG 3 cut(s) 169, 251, 466
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 4 cut(s) 127, 138, 443, 458
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 7, 142
Hpy188I TCNGA 2 cut(s) 206, 505
Hpy188III TCNNGA 3 cut(s) 232, 234, 422
Hpy8I GTNNAC 2 cut(s) 7, 142
HpyAV CCTTC 2 cut(s) 231, 272
HpyCH4III ACNGT 5 cut(s) 31, 93, 198, 361, 523
HpyCH4V TGCA 3 cut(s) 20, 35, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 3 cut(s) 477, 502, 548
Hsp92II CATG 3 cut(s) 169, 251, 466
Kzo9I GATC 2 cut(s) 208, 225
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 9 cut(s) 23, 91, 158, 197, 272, 385, 407, 476, 498
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 1 cut(s) 553
MalI GATC 2 cut(s) 210, 227
MboI GATC 2 cut(s) 208, 225
MboII GAAGA 3 cut(s) 37, 220, 467
MfeI CAATTG 2 cut(s) 217, 292
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 3 cut(s) 78, 421, 503
MluCI AATT 2 cut(s) 217, 292
MluI ACGCGT 1 cut(s) 108
MlyI GAGTC 3 cut(s) 121, 147, 467
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 2 cut(s) 217, 292
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 337
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 208, 225
NlaIII CATG 3 cut(s) 169, 251, 466
NlaIV GGNNCC 4 cut(s) 163, 299, 387, 541
NspI RCATGY 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 232
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 3 cut(s) 121, 146, 466
PpsI GAGTC 3 cut(s) 121, 146, 466
PpuMI RGGWCCY 1 cut(s) 540
Psp124BI GAGCTC 2 cut(s) 421, 503
Psp5II RGGWCCY 1 cut(s) 540
PspN4I GGNNCC 4 cut(s) 163, 299, 387, 541
PspPI GGNCC 2 cut(s) 93, 540
PspPPI RGGWCCY 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 358, 489
RsaNI GTAC 2 cut(s) 357, 488
RseI CAYNNNNRTG 1 cut(s) 252
SacI GAGCTC 2 cut(s) 421, 503
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 208, 225
Sau96I GGNCC 2 cut(s) 93, 540
SchI GAGTC 3 cut(s) 121, 147, 467
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 3 cut(s) 78, 421, 503
SetI ASST 9 cut(s) 123, 283, 342, 354, 421, 429, 495, 503, 554
SfcI CTRYAG 1 cut(s) 450
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 2 cut(s) 93, 540
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 232, 341
SmoI CTYRAG 2 cut(s) 232, 341
Sse9I AATT 2 cut(s) 217, 292
SsiI CCGC 1 cut(s) 382
SspMI CTAG 1 cut(s) 553
SstI GAGCTC 2 cut(s) 421, 503
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 332, 462
TaaI ACNGT 5 cut(s) 31, 93, 198, 361, 523
TaqI TCGA 1 cut(s) 233
TasI AATT 2 cut(s) 217, 292
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 3 cut(s) 34, 42, 259
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 3 cut(s) 34, 42, 259
VpaK11BI GGWCC 2 cut(s) 93, 540
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.