FvH4_1g27932

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000109
Physical Location & Seq
Forward (+)
19574343 .. 19575770
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27932.t1

Sequence Viewer

Length: 669 bp
ATGGTGCTGCTTGAGTTGCAACGGCTCCGCCGCATGTCTTTGCAGTCGAGAGATTGCTTTCTCTTGGTCGTCGCAAGCCAGATCCCGACTCCATATGAGAGCACATGGAGATCGGTATGTCCTGAGATTCACCAAGGCAGAGGAGGTCTGTGGTTTTTTGGTTGTTCCCTCTTCGTGATGGCCGAGTACGATGGCCTCCATGACGTTGCTGCTGTTTCGATTGTCTCCTTCCCAATCTGGGTGCAGATCATGGGGCTCCCACCGCATCTGTTCACTGATGAGGCCACCGAGAAGCTTGGCTTAACCCTAGCCTCGGAGGTGCAAGTCGACAAGTTGGGGGTGAAGTGTGGCATATGCAATAGGGTTAGGGCATTACATCGCTTGTGTGACCCTATCCTAGAGGCGTTCCAGAATGTCCCTTTCGAATTCGAATCTCAACGCTTCCCGGTGAATCTACAATTCAAGTACAATCGGACGGTCGGATTAATTTTGCCGAGATTGTGGAATGCTAGAGAGCGCTCTATTTCAGGTTGTGAGGGTCCTTCTGTCTTGCAGCCTCGCTTCATCGAAATTGAATGCATGAAGACTCCATTTGGATTCGGGGGTTCAGCTAGGGGTTTGGATGCCACAAACCCTAACCCTAAACCGAGTTTGCCTACGTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

7.57

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AciI CCGC 3 cut(s) 28, 31, 263
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 3 cut(s) 188, 467, 662
AfeI AGCGCT 1 cut(s) 518
AfiI CCNNNNNNNGG 2 cut(s) 238, 313
AgsI TTSAA 2 cut(s) 463, 575
AluBI AGCT 2 cut(s) 295, 611
AluI AGCT 2 cut(s) 295, 611
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 76
Aor51HI AGCGCT 1 cut(s) 518
AoxI GGCC 3 cut(s) 180, 193, 282
ApeKI GCWGC 3 cut(s) 7, 209, 553
ApoI RAATTY 1 cut(s) 425
AseI ATTAAT 1 cut(s) 485
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 539
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 3 cut(s) 122, 352, 460
AsuII TTCGAA 2 cut(s) 423, 429
AvaII GGWCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 196, 565
BccI CCATC 2 cut(s) 172, 185
BceAI ACGGC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 5 cut(s) 308, 398, 510, 612, 667
BfoI RGCGCY 1 cut(s) 520
BisI GCNGC 4 cut(s) 8, 31, 210, 554
BlsI GCNGC 4 cut(s) 9, 32, 211, 555
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 3 cut(s) 26, 257, 540
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 274, 613
BpiI GAAGAC 1 cut(s) 590
Bpu14I TTCGAA 2 cut(s) 423, 429
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 133, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 313
BseDI CCNNGG 2 cut(s) 133, 312
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 2 cut(s) 238, 313
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 196, 565
BsgI GTGCAG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 480
BshFI GGCC 3 cut(s) 182, 195, 284
BsiEI CGRYCG 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 238, 313
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 2 cut(s) 511, 581
BsnI GGCC 3 cut(s) 182, 195, 284
Bsp119I TTCGAA 2 cut(s) 423, 429
Bsp1286I GDGCHC 2 cut(s) 104, 258
Bsp143I GATC 3 cut(s) 81, 110, 246
BspACI CCGC 3 cut(s) 28, 31, 263
BspANI GGCC 3 cut(s) 182, 195, 284
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 26, 257, 540
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 2 cut(s) 423, 429
BssECI CCNNGG 2 cut(s) 133, 312
BssMI GATC 3 cut(s) 81, 110, 246
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 660
BstBI TTCGAA 2 cut(s) 423, 429
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 3 cut(s) 84, 113, 249
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 3 cut(s) 81, 110, 246
BstMCI CGRYCG 1 cut(s) 480
BstMWI GCNNNNNNNGC 2 cut(s) 16, 262
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 444
BstSNI TACGTA 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 196, 565
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 3 cut(s) 182, 195, 284
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 539
Csp6I GTAC 3 cut(s) 187, 466, 661
CviAII CATG 5 cut(s) 34, 105, 200, 250, 580
CviQI GTAC 3 cut(s) 187, 466, 661
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 83, 112, 248
DpnII GATC 3 cut(s) 81, 110, 246
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 17
Eco105I TACGTA 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 5 cut(s) 37, 108, 203, 253, 583
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 33, 104, 199, 249, 579
FauNDI CATATG 2 cut(s) 94, 353
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 8, 31, 210, 554
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 4 cut(s) 8, 31, 210, 554
FspBI CTAG 5 cut(s) 308, 398, 510, 612, 667
GlaI GCGC 1 cut(s) 518
GluI GCNGC 4 cut(s) 8, 31, 210, 554
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 3 cut(s) 182, 195, 284
HapII CCGG 1 cut(s) 446
HhaI GCGC 1 cut(s) 519
Hin1II CATG 5 cut(s) 37, 108, 203, 253, 583
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 6 cut(s) 88, 127, 431, 451, 586, 597
HpaII CCGG 1 cut(s) 446
HphI GGTGA 3 cut(s) 122, 352, 460
Hpy166II GTNNAC 2 cut(s) 273, 328
Hpy188I TCNGA 3 cut(s) 316, 474, 482
Hpy188III TCNNGA 5 cut(s) 48, 85, 122, 175, 409
Hpy8I GTNNAC 2 cut(s) 273, 328
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 238, 552
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 2 cut(s) 204, 659
HpyCH4V TGCA 7 cut(s) 19, 43, 244, 322, 357, 553, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 262
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 204, 659
Hsp92II CATG 5 cut(s) 37, 108, 203, 253, 583
HspAI GCGC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 81, 110, 246
LmnI GCTCC 2 cut(s) 30, 261
LpnPI CCDG 6 cut(s) 92, 135, 223, 422, 459, 513
Lsp1109I GCAGC 2 cut(s) 196, 565
LweI GCATC 2 cut(s) 274, 613
MaeI CTAG 5 cut(s) 308, 398, 510, 612, 667
MaeII ACGT 2 cut(s) 204, 659
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 83, 112, 248
MboI GATC 3 cut(s) 81, 110, 246
MboII GAAGA 2 cut(s) 163, 595
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 104, 258
MluCI AATT 4 cut(s) 425, 458, 486, 570
MlyI GAGTC 2 cut(s) 82, 580
MmeI TCCRAC 1 cut(s) 460
Mph1103I ATGCAT 1 cut(s) 581
MseI TTAA 2 cut(s) 302, 485
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 446
Mva1269I GAATGC 2 cut(s) 511, 581
MwoI GCNNNNNNNGC 2 cut(s) 16, 262
NciI CCSGG 1 cut(s) 446
NdeI CATATG 2 cut(s) 94, 353
NdeII GATC 3 cut(s) 81, 110, 246
NlaIII CATG 5 cut(s) 37, 108, 203, 253, 583
NlaIV GGNNCC 3 cut(s) 26, 257, 540
NmeAIII GCCGAG 2 cut(s) 208, 519
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 581
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 2 cut(s) 423, 429
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 2 cut(s) 511, 581
PfeI GAWTC 4 cut(s) 127, 431, 451, 597
PkrI GCNGC 4 cut(s) 9, 32, 211, 555
PleI GAGTC 2 cut(s) 82, 580
PpsI GAGTC 2 cut(s) 82, 580
Ppu21I YACGTR 1 cut(s) 660
PpuMI RGGWCCY 1 cut(s) 539
PshBI ATTAAT 1 cut(s) 485
Psp5II RGGWCCY 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 26, 257, 540
PspPI GGNCC 1 cut(s) 539
PspPPI RGGWCCY 1 cut(s) 539
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 3 cut(s) 188, 467, 662
RsaNI GTAC 3 cut(s) 187, 466, 661
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 302, 485
SatI GCNGC 4 cut(s) 8, 31, 210, 554
Sau3AI GATC 3 cut(s) 81, 110, 246
Sau96I GGNCC 1 cut(s) 539
SchI GAGTC 2 cut(s) 82, 580
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 2 cut(s) 104, 258
SetI ASST 7 cut(s) 148, 207, 297, 321, 532, 613, 662
SfaNI GCATC 2 cut(s) 274, 613
SfuI TTCGAA 2 cut(s) 423, 429
SinI GGWCC 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SnaBI TACGTA 1 cut(s) 660
Sse9I AATT 4 cut(s) 425, 458, 486, 570
SsiI CCGC 3 cut(s) 28, 31, 263
SspMI CTAG 5 cut(s) 308, 398, 510, 612, 667
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 2 cut(s) 207, 662
TaqI TCGA 6 cut(s) 47, 218, 327, 423, 429, 567
TasI AATT 4 cut(s) 425, 458, 486, 570
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 4 cut(s) 127, 431, 451, 597
Tru1I TTAA 2 cut(s) 302, 485
Tru9I TTAA 2 cut(s) 302, 485
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 7, 209, 553
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 553, 596
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 539
VspI ATTAAT 1 cut(s) 485
XapI RAATTY 1 cut(s) 425
XceI RCATGY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 5 cut(s) 308, 398, 510, 612, 667
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.